RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IGKV3D-7A0A0C4DH55 119 aa3.48□□□□□ -1.85
USP54-208ENST00000461520 TAX1BP3O14907 124 aa3.48□□□□□ -1.85
USP54-208ENST00000461520 COL5A1-AS1Q5SY13 56 aa3.48□□□□□ -1.85
USP54-208ENST00000461520 WFDC13Q8IUB5 93 aa3.48□□□□□ -1.85
USP54-208ENST00000461520 LCE1CQ5T751 118 aa3.47□□□□□ -1.85
USP54-208ENST00000461520 LCE1BQ5T7P3 118 aa3.47□□□□□ -1.85
USP54-208ENST00000461520 C14orf132Q9NPU4 83 aa3.47□□□□□ -1.85
USP54-208ENST00000461520 LINC00846Q9NV44 126 aa3.47□□□□□ -1.85
USP54-208ENST00000461520 SEC61GP60059 68 aa3.46□□□□□ -1.86
USP54-208ENST00000461520 NREPQ16612 68 aa3.46□□□□□ -1.86
USP54-208ENST00000461520 PRR15Q8IV56 129 aa3.46□□□□□ -1.86
USP54-208ENST00000461520 NEBP20929 6669 aa3.46□□□□□ -1.86
USP54-208ENST00000461520 KRTAP19-6Q3LI70 58 aa3.45□□□□□ -1.86
USP54-208ENST00000461520 TMEM254Q8TBM7 123 aa3.45□□□□□ -1.86
USP54-208ENST00000461520 MRPL34Q9BQ48 92 aaKnown RBP3.45□□□□□ -1.86
USP54-208ENST00000461520 MMP24-AS1A0A0U1RRL7 71 aa3.44□□□□□ -1.86
USP54-208ENST00000461520 A0A1W2PPM0 123 aa3.44□□□□□ -1.86
USP54-208ENST00000461520 hDV103S1A0JD37 113 aa3.42□□□□□ -1.86
USP54-208ENST00000461520 SCGB1A1P11684 91 aa3.42□□□□□ -1.86
USP54-208ENST00000461520 KRTAP6-3Q3LI67 103 aa3.42□□□□□ -1.86
USP54-208ENST00000461520 H1FX-AS1Q4G0G2 97 aa3.42□□□□□ -1.86
USP54-208ENST00000461520 K7EQZ3 153 aa3.41□□□□□ -1.86
USP54-208ENST00000461520 SPCS1Q9Y6A9 102 aa3.41□□□□□ -1.86
USP54-208ENST00000461520 NDUFS5O43920 106 aa3.4□□□□□ -1.87
USP54-208ENST00000461520 MUC12Q9UKN1 5478 aa3.39□□□□□ -1.87
USP54-208ENST00000461520 H3BT86 120 aa3.39□□□□□ -1.87
USP54-208ENST00000461520 C7orf65Q6ZTY9 151 aa3.39□□□□□ -1.87
USP54-208ENST00000461520 BPY2O14599 106 aa3.38□□□□□ -1.87
USP54-208ENST00000461520 LCE3DQ9BYE3 92 aa3.38□□□□□ -1.87
USP54-208ENST00000461520 V9GYY9 64 aa3.38□□□□□ -1.87
USP54-208ENST00000461520 Q5W150 140 aa3.37□□□□□ -1.87
USP54-208ENST00000461520 K7EP34 96 aa3.36□□□□□ -1.87
USP54-208ENST00000461520 Q8N9L7 120 aa3.36□□□□□ -1.87
USP54-208ENST00000461520 KRTAP20-1Q3LI63 56 aa3.35□□□□□ -1.87
USP54-208ENST00000461520 CASC2Q6XLA1 102 aa3.35□□□□□ -1.87
USP54-208ENST00000461520 HCG22E2RYF7 251 aa3.34□□□□□ -1.87
USP54-208ENST00000461520 CXCL6P80162 114 aa3.33□□□□□ -1.88
USP54-208ENST00000461520 C4orf26Q17RF5 130 aa3.32□□□□□ -1.88
USP54-208ENST00000461520 GTF2H5Q6ZYL4 71 aa3.32□□□□□ -1.88
USP54-208ENST00000461520 PP632Q6XCG6 107 aa3.3□□□□□ -1.88
USP54-208ENST00000461520 K7ERU9 68 aa3.29□□□□□ -1.88
USP54-208ENST00000461520 UBL5Q9BZL1 73 aa3.29□□□□□ -1.88
USP54-208ENST00000461520 FAM236AA0A1B0GUQ0 79 aa3.28□□□□□ -1.88
USP54-208ENST00000461520 FAM236BA0A1B0GV22 79 aa3.28□□□□□ -1.88
USP54-208ENST00000461520 ETDBQ3ZM63 59 aa3.28□□□□□ -1.88
USP54-208ENST00000461520 S4R3F8 94 aa3.28□□□□□ -1.88
USP54-208ENST00000461520 CSAG1Q6PB30 78 aa3.27□□□□□ -1.89
USP54-208ENST00000461520 C1orf64Q8NEQ6 169 aa3.26□□□□□ -1.89
USP54-208ENST00000461520 GPR98Q8WXG9 6306 aa3.25□□□□□ -1.89
USP54-208ENST00000461520 A6NN06 94 aa3.25□□□□□ -1.89
USP54-208ENST00000461520 F8W1H4 67 aa3.25□□□□□ -1.89
USP54-208ENST00000461520 MT1BP07438 61 aa3.25□□□□□ -1.89
USP54-208ENST00000461520 Q5VV11 94 aa3.25□□□□□ -1.89
USP54-208ENST00000461520 LCA10Q71F78 164 aa3.25□□□□□ -1.89
USP54-208ENST00000461520 SPRR2GQ9BYE4 73 aa3.25□□□□□ -1.89
USP54-208ENST00000461520 TP53AIP1Q9HCN2 124 aa3.25□□□□□ -1.89
USP54-208ENST00000461520 KRTAP19-8Q3LI54 63 aa3.24□□□□□ -1.89
USP54-208ENST00000461520 MDN1Q9NU22 5596 aa3.24□□□□□ -1.89
USP54-208ENST00000461520 KMT2DO14686 5537 aa3.22□□□□□ -1.89
USP54-208ENST00000461520 KLKP1Q107X0 134 aa3.22□□□□□ -1.89
USP54-208ENST00000461520 PRO0628Q9UI54 55 aa3.21□□□□□ -1.9
USP54-208ENST00000461520 J3QR89 54 aa3.19□□□□□ -1.9
USP54-208ENST00000461520 MT-ATP8P03928 68 aa3.18□□□□□ -1.9
USP54-208ENST00000461520 CYP4F30PQ9H0H9 118 aa3.18□□□□□ -1.9
USP54-208ENST00000461520 CRIPTQ9P021 101 aa3.18□□□□□ -1.9
USP54-208ENST00000461520 TRAV22A0A0B4J277 110 aa3.16□□□□□ -1.9
USP54-208ENST00000461520 LOC101927531A0A1B0GV80 90 aa3.16□□□□□ -1.9
USP54-208ENST00000461520 A0A087WVE0 104 aa3.15□□□□□ -1.91
USP54-208ENST00000461520 HIST1H4AP62805 103 aaKnown RBP3.15□□□□□ -1.91
USP54-208ENST00000461520 RPS28P62857 69 aaKnown RBP3.15□□□□□ -1.91
USP54-208ENST00000461520 IMUPQ9GZP8 106 aa3.15□□□□□ -1.91
USP54-208ENST00000461520 SMIM20Q8N5G0 67 aa3.14□□□□□ -1.91
USP54-208ENST00000461520 H0YAA0 97 aa3.13□□□□□ -1.91
USP54-208ENST00000461520 KRTAP2-3P0C7H8 128 aa3.13□□□□□ -1.91
USP54-208ENST00000461520 KRTAP2-4Q9BYR9 128 aa3.13□□□□□ -1.91
USP54-208ENST00000461520 FAM240AA0A1B0GVK7 77 aa3.12□□□□□ -1.91
USP54-208ENST00000461520 NDUFC1O43677 76 aa3.12□□□□□ -1.91
USP54-208ENST00000461520 ACYP1P07311 99 aa3.12□□□□□ -1.91
USP54-208ENST00000461520 ATOX1O00244 68 aa3.11□□□□□ -1.91
USP54-208ENST00000461520 UQCRQO14949 82 aa3.1□□□□□ -1.91
USP54-208ENST00000461520 ATP5EP2Q5VTU8 51 aa3.1□□□□□ -1.91
USP54-208ENST00000461520 A8MUN3 132 aa3.09□□□□□ -1.91
USP54-208ENST00000461520 H0Y9P7 68 aa3.09□□□□□ -1.91
USP54-208ENST00000461520 LINC00643Q86TS7 51 aa3.08□□□□□ -1.92
USP54-208ENST00000461520 ANAPC13Q9BS18 74 aa3.07□□□□□ -1.92
USP54-208ENST00000461520 PRO2289Q9P1D8 64 aa3.07□□□□□ -1.92
USP54-208ENST00000461520 CCDC179H3BU77 68 aa3.06□□□□□ -1.92
USP54-208ENST00000461520 SPRR2EP22531 72 aa3.06□□□□□ -1.92
USP54-208ENST00000461520 SPRR2BP35325 72 aa3.06□□□□□ -1.92
USP54-208ENST00000461520 SPRR2AP35326 72 aa3.06□□□□□ -1.92
USP54-208ENST00000461520 PMAIP1Q13794 54 aa3.06□□□□□ -1.92
USP54-208ENST00000461520 ADM2Q7Z4H4 148 aa3.06□□□□□ -1.92
USP54-208ENST00000461520 SPRR2FQ96RM1 72 aa3.05□□□□□ -1.92
USP54-208ENST00000461520 LINC00208Q96KT6 92 aa3.04□□□□□ -1.92
USP54-208ENST00000461520 PLAC4Q8WY50 150 aa3.03□□□□□ -1.92
USP54-208ENST00000461520 MP68P56378 58 aa3.02□□□□□ -1.93
USP54-208ENST00000461520 MT1XP80297 61 aa3.02□□□□□ -1.93
USP54-208ENST00000461520 KRTAP2-1Q9BYU5 128 aa3.02□□□□□ -1.93
USP54-208ENST00000461520 R4GN34 69 aa3.01□□□□□ -1.93
USP54-208ENST00000461520 C20orf197Q8N268 126 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms