RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 LYSTQ99698 3801 aa3.24□□□□□ -1.89
VPS13D-202ENST00000460333 LCE2DQ5TA82 110 aaPredicted RBP3.23□□□□□ -1.89
VPS13D-202ENST00000460333 TPRXLQ17RH7 258 aa3.23□□□□□ -1.89
VPS13D-202ENST00000460333 DNAH11Q96DT5 4516 aa3.23□□□□□ -1.89
VPS13D-202ENST00000460333 HECTD4Q9Y4D8 3996 aa3.23□□□□□ -1.89
VPS13D-202ENST00000460333 DNAH8Q96JB1 4490 aa3.22□□□□□ -1.89
VPS13D-202ENST00000460333 TNP1P09430 55 aa3.22□□□□□ -1.89
VPS13D-202ENST00000460333 DNAH5Q8TE73 4624 aa3.2□□□□□ -1.9
VPS13D-202ENST00000460333 XP32Q5T750 250 aa3.2□□□□□ -1.9
VPS13D-202ENST00000460333 KRTAP3-3Q9BYR6 98 aa3.2□□□□□ -1.9
VPS13D-202ENST00000460333 KRTAP3-2Q9BYR7 98 aa3.2□□□□□ -1.9
VPS13D-202ENST00000460333 DYNC1H1Q14204 4646 aaKnown RBP3.18□□□□□ -1.9
VPS13D-202ENST00000460333 LRP1BQ9NZR2 4599 aa3.16□□□□□ -1.9
VPS13D-202ENST00000460333 SACSQ9NZJ4 4579 aa3.15□□□□□ -1.91
VPS13D-202ENST00000460333 FAT2Q9NYQ8 4349 aa3.15□□□□□ -1.91
VPS13D-202ENST00000460333 MT1HL1P0DM35 61 aa3.15□□□□□ -1.91
VPS13D-202ENST00000460333 HYDINQ4G0P3 5121 aa3.13□□□□□ -1.91
VPS13D-202ENST00000460333 KRTAP15-1Q3LI76 137 aa3.13□□□□□ -1.91
VPS13D-202ENST00000460333 FRAS1Q86XX4 4008 aa3.13□□□□□ -1.91
VPS13D-202ENST00000460333 RYR2Q92736 4967 aa3.11□□□□□ -1.91
VPS13D-202ENST00000460333 PKD1P98161 4303 aa3.11□□□□□ -1.91
VPS13D-202ENST00000460333 VPS13BQ7Z7G8 4022 aa3.1□□□□□ -1.91
VPS13D-202ENST00000460333 KRTAP12-2P59991 146 aa3.1□□□□□ -1.91
VPS13D-202ENST00000460333 KRTAP12-1P59990 96 aa3.08□□□□□ -1.92
VPS13D-202ENST00000460333 KRTAP10-10P60014 251 aa3.08□□□□□ -1.92
VPS13D-202ENST00000460333 APOBP04114 4563 aaKnown RBP3.07□□□□□ -1.92
VPS13D-202ENST00000460333 KRTAP13-4Q3LI77 160 aa3.05□□□□□ -1.92
VPS13D-202ENST00000460333 KRTAP3-1Q9BYR8 98 aa3.05□□□□□ -1.92
VPS13D-202ENST00000460333 FAT1Q14517 4588 aa3.05□□□□□ -1.92
VPS13D-202ENST00000460333 KRTAP4-5Q9BYR2 181 aa3.04□□□□□ -1.92
VPS13D-202ENST00000460333 PKHD1P08F94 4074 aa3.02□□□□□ -1.93
VPS13D-202ENST00000460333 KRTAP10-6P60371 365 aaPredicted RBP3.02□□□□□ -1.93
VPS13D-202ENST00000460333 RYR1P21817 5038 aa3.02□□□□□ -1.93
VPS13D-202ENST00000460333 INE1O15225 51 aa3□□□□□ -1.93
VPS13D-202ENST00000460333 PRO2289Q9P1D8 64 aa3□□□□□ -1.93
VPS13D-202ENST00000460333 KMT2CQ8NEZ4 4911 aaKnown RBP2.98□□□□□ -1.93
VPS13D-202ENST00000460333 KRTAP17-1Q9BYP8 105 aa2.97□□□□□ -1.93
VPS13D-202ENST00000460333 RYR3Q15413 4870 aa2.97□□□□□ -1.93
VPS13D-202ENST00000460333 HSPG2P98160 4391 aa2.96□□□□□ -1.94
VPS13D-202ENST00000460333 PKHD1L1Q86WI1 4243 aa2.96□□□□□ -1.94
VPS13D-202ENST00000460333 KIAA1109Q2LD37 5005 aa2.95□□□□□ -1.94
VPS13D-202ENST00000460333 FAT3Q8TDW7 4589 aa2.91□□□□□ -1.94
VPS13D-202ENST00000460333 LRP1Q07954 4544 aaKnown RBP2.9□□□□□ -1.95
VPS13D-202ENST00000460333 TNXBP22105 4242 aa2.88□□□□□ -1.95
VPS13D-202ENST00000460333 KRTAP23-1A1A580 65 aa2.87□□□□□ -1.95
VPS13D-202ENST00000460333 BIRC6Q9NR09 4857 aa2.85□□□□□ -1.95
VPS13D-202ENST00000460333 EPPK1P58107 5090 aaKnown RBP2.82□□□□□ -1.96
VPS13D-202ENST00000460333 KRTAP4-1Q9BYQ7 146 aa2.81□□□□□ -1.96
VPS13D-202ENST00000460333 MYCBP2O75592 4640 aa2.8□□□□□ -1.96
VPS13D-202ENST00000460333 LCE2BO14633 110 aa2.8□□□□□ -1.96
VPS13D-202ENST00000460333 HERC2O95714 4834 aa2.79□□□□□ -1.96
VPS13D-202ENST00000460333 LCE2CQ5TA81 110 aa2.74□□□□□ -1.97
VPS13D-202ENST00000460333 ABCA13Q86UQ4 5058 aa2.73□□□□□ -1.97
VPS13D-202ENST00000460333 LRP2P98164 4655 aa2.72□□□□□ -1.97
VPS13D-202ENST00000460333 LCE2AQ5TA79 106 aaPredicted RBP2.7□□□□□ -1.98
VPS13D-202ENST00000460333 LPAP08519 4548 aa2.67□□□□□ -1.98
VPS13D-202ENST00000460333 LORP23490 312 aaPredicted RBP2.67□□□□□ -1.98
VPS13D-202ENST00000460333 HERC1Q15751 4861 aa2.66□□□□□ -1.98
VPS13D-202ENST00000460333 MT1HP80294 61 aa2.66□□□□□ -1.98
VPS13D-202ENST00000460333 MUC17Q685J3 4493 aa2.66□□□□□ -1.98
VPS13D-202ENST00000460333 KRTAP19-2Q3LHN2 52 aa2.66□□□□□ -1.98
VPS13D-202ENST00000460333 KRTAP9-6A0A140TA67 174 aa2.61□□□□□ -1.99
VPS13D-202ENST00000460333 PCLOQ9Y6V0 5065 aa2.61□□□□□ -1.99
VPS13D-202ENST00000460333 KRTAP10-12P60413 245 aa2.61□□□□□ -1.99
VPS13D-202ENST00000460333 SPRR2GQ9BYE4 73 aa2.61□□□□□ -1.99
VPS13D-202ENST00000460333 KRTAP12-3P60328 96 aa2.6□□□□□ -1.99
VPS13D-202ENST00000460333 MT2AP02795 61 aa2.59□□□□□ -2
VPS13D-202ENST00000460333 LCE3AQ5TA76 89 aa2.59□□□□□ -2
VPS13D-202ENST00000460333 FLGP20930 4061 aaPredicted RBP2.56□□□□□ -2
VPS13D-202ENST00000460333 HMCN2Q8NDA2 5059 aa2.56□□□□□ -2
VPS13D-202ENST00000460333 MT1FP04733 61 aa2.55□□□□□ -2
VPS13D-202ENST00000460333 KRTAP9-2Q9BYQ4 174 aa2.52□□□□□ -2.01
VPS13D-202ENST00000460333 KRTAP9-8Q9BYQ0 159 aa2.52□□□□□ -2.01
VPS13D-202ENST00000460333 KRTAP19-1Q8IUB9 90 aa2.52□□□□□ -2.01
VPS13D-202ENST00000460333 KRTAP8-1Q8IUC2 63 aa2.51□□□□□ -2.01
VPS13D-202ENST00000460333 KRTAP19-8Q3LI54 63 aa2.51□□□□□ -2.01
VPS13D-202ENST00000460333 SPRR5A0A1B0GTR4 108 aa2.48□□□□□ -2.01
VPS13D-202ENST00000460333 CRCT1Q9UGL9 99 aa2.48□□□□□ -2.01
VPS13D-202ENST00000460333 RNF213Q63HN8 5207 aa2.47□□□□□ -2.01
VPS13D-202ENST00000460333 KRTAP9-3Q9BYQ3 159 aa2.44□□□□□ -2.02
VPS13D-202ENST00000460333 FAT4Q6V0I7 4981 aa2.42□□□□□ -2.02
VPS13D-202ENST00000460333 MT1BP07438 61 aa2.42□□□□□ -2.02
VPS13D-202ENST00000460333 KRTAP19-4Q3LI73 84 aa2.41□□□□□ -2.02
VPS13D-202ENST00000460333 SPRR2FQ96RM1 72 aa2.39□□□□□ -2.03
VPS13D-202ENST00000460333 MUC2Q02817 5179 aa2.39□□□□□ -2.03
VPS13D-202ENST00000460333 UBR4Q5T4S7 5183 aa2.39□□□□□ -2.03
VPS13D-202ENST00000460333 MT1XP80297 61 aa2.37□□□□□ -2.03
VPS13D-202ENST00000460333 KRTAP10-5P60370 271 aa2.37□□□□□ -2.03
VPS13D-202ENST00000460333 LCE3CQ5T5A8 94 aa2.34□□□□□ -2.04
VPS13D-202ENST00000460333 KRTAP9-7A8MTY7 169 aa2.33□□□□□ -2.04
VPS13D-202ENST00000460333 SPRR2EP22531 72 aa2.3□□□□□ -2.04
VPS13D-202ENST00000460333 SPRR2BP35325 72 aa2.3□□□□□ -2.04
VPS13D-202ENST00000460333 SPRR2AP35326 72 aa2.3□□□□□ -2.04
VPS13D-202ENST00000460333 KRTAP10-7P60409 375 aaPredicted RBP2.3□□□□□ -2.04
VPS13D-202ENST00000460333 FSIP2Q5CZC0 6907 aa2.26□□□□□ -2.05
VPS13D-202ENST00000460333 KRTAP19-5Q3LI72 72 aa2.25□□□□□ -2.05
VPS13D-202ENST00000460333 SPRR2DP22532 72 aa2.24□□□□□ -2.05
VPS13D-202ENST00000460333 KRTAP19-6Q3LI70 58 aa2.22□□□□□ -2.05
VPS13D-202ENST00000460333 KRTAP20-1Q3LI63 56 aa2.21□□□□□ -2.06
VPS13D-202ENST00000460333 OBSCNQ5VST9 7968 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms