RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 A0A1B0GVY2 172 aa6.65□□□□□ -1.34
SYNE2-207ENST00000458046 A0A1B0GU33 70 aa6.64□□□□□ -1.35
SYNE2-207ENST00000458046 SPINK7P58062 85 aa6.64□□□□□ -1.35
SYNE2-207ENST00000458046 FAT2Q9NYQ8 4349 aa6.64□□□□□ -1.35
SYNE2-207ENST00000458046 VPS13BQ7Z7G8 4022 aa6.64□□□□□ -1.35
SYNE2-207ENST00000458046 ACYP2P14621 99 aa6.63□□□□□ -1.35
SYNE2-207ENST00000458046 Q6ZSA8 131 aa6.6□□□□□ -1.35
SYNE2-207ENST00000458046 KRTAP1-4P0C5Y4 121 aa6.59□□□□□ -1.35
SYNE2-207ENST00000458046 IGKV2-30P06310 120 aa6.58□□□□□ -1.36
SYNE2-207ENST00000458046 DMAC1Q96GE9 116 aa6.58□□□□□ -1.36
SYNE2-207ENST00000458046 IGKV2D-30A0A075B6S6 120 aa6.56□□□□□ -1.36
SYNE2-207ENST00000458046 DMBT1Q9UGM3 2413 aaPredicted RBP6.56□□□□□ -1.36
SYNE2-207ENST00000458046 KRTAP15-1Q3LI76 137 aa6.56□□□□□ -1.36
SYNE2-207ENST00000458046 PKHD1P08F94 4074 aa6.52□□□□□ -1.37
SYNE2-207ENST00000458046 A0A1B0GU69 56 aa6.49□□□□□ -1.37
SYNE2-207ENST00000458046 CRCT1Q9UGL9 99 aa6.48□□□□□ -1.37
SYNE2-207ENST00000458046 SPINK1P00995 79 aa6.47□□□□□ -1.37
SYNE2-207ENST00000458046 HSPG2P98160 4391 aa6.46□□□□□ -1.37
SYNE2-207ENST00000458046 SMR3BP02814 79 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-207ENST00000458046 HMCN2Q8NDA2 5059 aa6.42□□□□□ -1.38
SYNE2-207ENST00000458046 FAT1Q14517 4588 aa6.42□□□□□ -1.38
SYNE2-207ENST00000458046 LINC00304Q8N9R0 145 aa6.42□□□□□ -1.38
SYNE2-207ENST00000458046 R4GN34 69 aa6.4□□□□□ -1.38
SYNE2-207ENST00000458046 FAT4Q6V0I7 4981 aa6.39□□□□□ -1.39
SYNE2-207ENST00000458046 C9orf92A6NGG3 77 aa6.37□□□□□ -1.39
SYNE2-207ENST00000458046 KRTAP9-7A8MTY7 169 aa6.36□□□□□ -1.39
SYNE2-207ENST00000458046 SPATA8Q6RVD6 105 aa6.36□□□□□ -1.39
SYNE2-207ENST00000458046 UQCR11O14957 56 aa6.36□□□□□ -1.39
SYNE2-207ENST00000458046 SPINT4Q6UDR6 99 aa6.35□□□□□ -1.39
SYNE2-207ENST00000458046 PRO2289Q9P1D8 64 aa6.32□□□□□ -1.4
SYNE2-207ENST00000458046 MYCBP2O75592 4640 aa6.31□□□□□ -1.4
SYNE2-207ENST00000458046 RPS29P62273 56 aaKnown RBP6.31□□□□□ -1.4
SYNE2-207ENST00000458046 MUC2Q02817 5179 aa6.3□□□□□ -1.4
SYNE2-207ENST00000458046 APOBP04114 4563 aaKnown RBP6.3□□□□□ -1.4
SYNE2-207ENST00000458046 PKHD1L1Q86WI1 4243 aa6.27□□□□□ -1.41
SYNE2-207ENST00000458046 RNF213Q63HN8 5207 aa6.26□□□□□ -1.41
SYNE2-207ENST00000458046 KRTAP10-4P60372 401 aaPredicted RBP6.23□□□□□ -1.41
SYNE2-207ENST00000458046 TPRXLQ17RH7 258 aa6.22□□□□□ -1.41
SYNE2-207ENST00000458046 LRP1Q07954 4544 aaKnown RBP6.16□□□□□ -1.42
SYNE2-207ENST00000458046 H0YAA0 97 aa6.16□□□□□ -1.42
SYNE2-207ENST00000458046 FLG2Q5D862 2391 aaPredicted RBP6.13□□□□□ -1.43
SYNE2-207ENST00000458046 FAT3Q8TDW7 4589 aa6.13□□□□□ -1.43
SYNE2-207ENST00000458046 Q5VSD8 79 aa6.12□□□□□ -1.43
SYNE2-207ENST00000458046 COX6B2Q6YFQ2 88 aa6.09□□□□□ -1.43
SYNE2-207ENST00000458046 H1FX-AS1Q4G0G2 97 aa6.09□□□□□ -1.44
SYNE2-207ENST00000458046 TNXBP22105 4242 aa6.08□□□□□ -1.44
SYNE2-207ENST00000458046 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.08□□□□□ -1.44
SYNE2-207ENST00000458046 KRTAP10-8P60410 259 aa6.03□□□□□ -1.44
SYNE2-207ENST00000458046 RPL37P61927 97 aaKnown RBP5.96□□□□□ -1.46
SYNE2-207ENST00000458046 XP32Q5T750 250 aa5.95□□□□□ -1.46
SYNE2-207ENST00000458046 CRIPTQ9P021 101 aa5.93□□□□□ -1.46
SYNE2-207ENST00000458046 KRTAP10-6P60371 365 aaPredicted RBP5.92□□□□□ -1.46
SYNE2-207ENST00000458046 LPAP08519 4548 aa5.9□□□□□ -1.46
SYNE2-207ENST00000458046 A0A0D9SG42 100 aa5.9□□□□□ -1.47
SYNE2-207ENST00000458046 KRTAP13-4Q3LI77 160 aa5.89□□□□□ -1.47
SYNE2-207ENST00000458046 S4R3F8 94 aa5.89□□□□□ -1.47
SYNE2-207ENST00000458046 LRP2P98164 4655 aa5.83□□□□□ -1.48
SYNE2-207ENST00000458046 MT1HL1P0DM35 61 aa5.81□□□□□ -1.48
SYNE2-207ENST00000458046 SSPOA2VEC9 5147 aa5.79□□□□□ -1.48
SYNE2-207ENST00000458046 KRTAP12-2P59991 146 aa5.71□□□□□ -1.5
SYNE2-207ENST00000458046 INE1O15225 51 aa5.67□□□□□ -1.5
SYNE2-207ENST00000458046 C10orf95Q9H7T3 257 aa5.67□□□□□ -1.5
SYNE2-207ENST00000458046 KRTAP12-1P59990 96 aa5.63□□□□□ -1.51
SYNE2-207ENST00000458046 M0QZ58 72 aa5.58□□□□□ -1.52
SYNE2-207ENST00000458046 KRTAP20-1Q3LI63 56 aa5.57□□□□□ -1.52
SYNE2-207ENST00000458046 PLAC4Q8WY50 150 aa5.57□□□□□ -1.52
SYNE2-207ENST00000458046 LCE5AQ5TCM9 118 aa5.54□□□□□ -1.52
SYNE2-207ENST00000458046 MUC17Q685J3 4493 aa5.52□□□□□ -1.53
SYNE2-207ENST00000458046 KRTAP6-3Q3LI67 103 aa5.47□□□□□ -1.53
SYNE2-207ENST00000458046 KRTAP4-1Q9BYQ7 146 aa5.46□□□□□ -1.54
SYNE2-207ENST00000458046 FSIP2Q5CZC0 6907 aa5.34□□□□□ -1.55
SYNE2-207ENST00000458046 KRTAP19-2Q3LHN2 52 aa5.31□□□□□ -1.56
SYNE2-207ENST00000458046 NEBP20929 6669 aa5.31□□□□□ -1.56
SYNE2-207ENST00000458046 KRTAP9-4Q9BYQ2 154 aa5.3□□□□□ -1.56
SYNE2-207ENST00000458046 KRTAP2-2Q9BYT5 123 aa5.29□□□□□ -1.56
SYNE2-207ENST00000458046 GPR98Q8WXG9 6306 aa5.24□□□□□ -1.57
SYNE2-207ENST00000458046 KRTAP19-4Q3LI73 84 aa5.23□□□□□ -1.57
SYNE2-207ENST00000458046 FLGP20930 4061 aaPredicted RBP5.22□□□□□ -1.57
SYNE2-207ENST00000458046 PP632Q6XCG6 107 aa5.21□□□□□ -1.57
SYNE2-207ENST00000458046 KRTAP2-3P0C7H8 128 aa5.17□□□□□ -1.58
SYNE2-207ENST00000458046 KRTAP2-4Q9BYR9 128 aa5.17□□□□□ -1.58
SYNE2-207ENST00000458046 USH2AO75445 5202 aa5.16□□□□□ -1.58
SYNE2-207ENST00000458046 LCE1FQ5T754 118 aa5.09□□□□□ -1.6
SYNE2-207ENST00000458046 KRTAP9-9Q9BYP9 154 aa5.08□□□□□ -1.6
SYNE2-207ENST00000458046 FCGBPQ9Y6R7 5405 aaPredicted RBP5.03□□□□□ -1.6
SYNE2-207ENST00000458046 SYNE2Q8WXH0 6885 aaKnown RBP5.02□□□□□ -1.61
SYNE2-207ENST00000458046 TNP1P09430 55 aa5□□□□□ -1.61
SYNE2-207ENST00000458046 KRTAP19-1Q8IUB9 90 aa5□□□□□ -1.61
SYNE2-207ENST00000458046 M0R2T5 61 aa4.95□□□□□ -1.62
SYNE2-207ENST00000458046 MACF1Q9UPN3 7388 aaKnown RBP4.92□□□□□ -1.62
SYNE2-207ENST00000458046 SPRR2GQ9BYE4 73 aa4.9□□□□□ -1.63
SYNE2-207ENST00000458046 KRTAP2-1Q9BYU5 128 aa4.9□□□□□ -1.63
SYNE2-207ENST00000458046 MT1HP80294 61 aa4.86□□□□□ -1.63
SYNE2-207ENST00000458046 KRTAP10-10P60014 251 aa4.83□□□□□ -1.64
SYNE2-207ENST00000458046 LCE4AQ5TA78 99 aa4.83□□□□□ -1.64
SYNE2-207ENST00000458046 KRTAP19-6Q3LI70 58 aa4.82□□□□□ -1.64
SYNE2-207ENST00000458046 MT1FP04733 61 aa4.81□□□□□ -1.64
SYNE2-207ENST00000458046 MT2AP02795 61 aa4.8□□□□□ -1.64
SYNE2-207ENST00000458046 LCE3AQ5TA76 89 aa4.77□□□□□ -1.65
SYNE2-207ENST00000458046 SPRR5A0A1B0GTR4 108 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms