RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 KRTAP9-7A8MTY7 169 aa10.73□□□□□ -0.69
CBX3-204ENST00000456948 SCGB1A1P11684 91 aa10.73□□□□□ -0.69
CBX3-204ENST00000456948 OCR1Q9BZK8 76 aa10.73□□□□□ -0.69
CBX3-204ENST00000456948 A8MUN3 132 aa10.69□□□□□ -0.7
CBX3-204ENST00000456948 H3BPC8 53 aa10.65□□□□□ -0.7
CBX3-204ENST00000456948 K7ERU9 68 aa10.64□□□□□ -0.71
CBX3-204ENST00000456948 NDUFC1O43677 76 aa10.64□□□□□ -0.71
CBX3-204ENST00000456948 IMUPQ9GZP8 106 aa10.61□□□□□ -0.71
CBX3-204ENST00000456948 KLKP1Q107X0 134 aa10.59□□□□□ -0.71
CBX3-204ENST00000456948 KRTAP19-6Q3LI70 58 aa10.56□□□□□ -0.72
CBX3-204ENST00000456948 CRIPTQ9P021 101 aa10.49□□□□□ -0.73
CBX3-204ENST00000456948 SMIM20Q8N5G0 67 aa10.48□□□□□ -0.73
CBX3-204ENST00000456948 SPRR2GQ9BYE4 73 aa10.46□□□□□ -0.73
CBX3-204ENST00000456948 H0YAA0 97 aa10.44□□□□□ -0.74
CBX3-204ENST00000456948 MT-ATP8P03928 68 aa10.44□□□□□ -0.74
CBX3-204ENST00000456948 Q5VV11 94 aa10.43□□□□□ -0.74
CBX3-204ENST00000456948 MACF1Q9UPN3 7388 aaKnown RBP10.4□□□□□ -0.74
CBX3-204ENST00000456948 TRAV7A0A075B6U4 112 aa10.38□□□□□ -0.75
CBX3-204ENST00000456948 DMAC1Q96GE9 116 aa10.36□□□□□ -0.75
CBX3-204ENST00000456948 KRTAP19-8Q3LI54 63 aa10.34□□□□□ -0.75
CBX3-204ENST00000456948 SYNE2Q8WXH0 6885 aaKnown RBP10.33□□□□□ -0.76
CBX3-204ENST00000456948 ADM2Q7Z4H4 148 aa10.32□□□□□ -0.76
CBX3-204ENST00000456948 MT1BP07438 61 aa10.27□□□□□ -0.77
CBX3-204ENST00000456948 A6NN06 94 aa10.24□□□□□ -0.77
CBX3-204ENST00000456948 ACYP2P14621 99 aa10.24□□□□□ -0.77
CBX3-204ENST00000456948 C20orf197Q8N268 126 aa10.24□□□□□ -0.77
CBX3-204ENST00000456948 SPTSSBQ8NFR3 76 aa10.16□□□□□ -0.78
CBX3-204ENST00000456948 R4GN34 69 aa10.11□□□□□ -0.79
CBX3-204ENST00000456948 SNURFQ9Y675 71 aa10.1□□□□□ -0.79
CBX3-204ENST00000456948 KRTAP6-3Q3LI67 103 aa10.09□□□□□ -0.79
CBX3-204ENST00000456948 CHKB-CPT1BH3BT56 60 aa10.08□□□□□ -0.8
CBX3-204ENST00000456948 SERP2Q8N6R1 65 aa10.08□□□□□ -0.8
CBX3-204ENST00000456948 KRTAP10-5P60370 271 aa10.06□□□□□ -0.8
CBX3-204ENST00000456948 P0C880 135 aa10.02□□□□□ -0.81
CBX3-204ENST00000456948 SPANXA2-OT1Q8N9U9 137 aa10.01□□□□□ -0.81
CBX3-204ENST00000456948 PLAC4Q8WY50 150 aa10□□□□□ -0.81
CBX3-204ENST00000456948 M0QZ58 72 aa9.99□□□□□ -0.81
CBX3-204ENST00000456948 PRO2289Q9P1D8 64 aa9.92□□□□□ -0.82
CBX3-204ENST00000456948 LINC01554Q52M75 96 aa9.84□□□□□ -0.83
CBX3-204ENST00000456948 COX7CP15954 63 aa9.8□□□□□ -0.84
CBX3-204ENST00000456948 NEBP20929 6669 aa9.68□□□□□ -0.86
CBX3-204ENST00000456948 MUC12Q9UKN1 5478 aa9.68□□□□□ -0.86
CBX3-204ENST00000456948 MT1XP80297 61 aa9.68□□□□□ -0.86
CBX3-204ENST00000456948 COA5Q86WW8 74 aa9.67□□□□□ -0.86
CBX3-204ENST00000456948 SEC61GP60059 68 aa9.63□□□□□ -0.87
CBX3-204ENST00000456948 ANAPC13Q9BS18 74 aa9.62□□□□□ -0.87
CBX3-204ENST00000456948 H7BZZ5 65 aa9.57□□□□□ -0.88
CBX3-204ENST00000456948 KRTAP5-9P26371 169 aa9.57□□□□□ -0.88
CBX3-204ENST00000456948 SERP1Q9Y6X1 66 aa9.57□□□□□ -0.88
CBX3-204ENST00000456948 KRTAP12-2P59991 146 aa9.49□□□□□ -0.89
CBX3-204ENST00000456948 KMT2DO14686 5537 aa9.47□□□□□ -0.89
CBX3-204ENST00000456948 CYSTM1Q9H1C7 97 aa9.46□□□□□ -0.9
CBX3-204ENST00000456948 MDN1Q9NU22 5596 aa9.43□□□□□ -0.9
CBX3-204ENST00000456948 KRTAP20-1Q3LI63 56 aa9.42□□□□□ -0.9
CBX3-204ENST00000456948 KRTAP8-1Q8IUC2 63 aa9.4□□□□□ -0.9
CBX3-204ENST00000456948 KRTAP13-4Q3LI77 160 aa9.38□□□□□ -0.91
CBX3-204ENST00000456948 SPRR2FQ96RM1 72 aa9.36□□□□□ -0.91
CBX3-204ENST00000456948 CAMK2N1Q7Z7J9 78 aa9.35□□□□□ -0.91
CBX3-204ENST00000456948 A0A1B0GU33 70 aa9.33□□□□□ -0.92
CBX3-204ENST00000456948 CCDC179H3BU77 68 aa9.32□□□□□ -0.92
CBX3-204ENST00000456948 ATP5EP56381 51 aaPredicted RBP9.27□□□□□ -0.93
CBX3-204ENST00000456948 A0A1B0GU69 56 aa9.26□□□□□ -0.93
CBX3-204ENST00000456948 A0A0D9SG42 100 aa9.24□□□□□ -0.93
CBX3-204ENST00000456948 SPRR2EP22531 72 aa9.24□□□□□ -0.93
CBX3-204ENST00000456948 SPRR2BP35325 72 aa9.24□□□□□ -0.93
CBX3-204ENST00000456948 SPRR2AP35326 72 aa9.24□□□□□ -0.93
CBX3-204ENST00000456948 KRTAP10-7P60409 375 aaPredicted RBP9.24□□□□□ -0.93
CBX3-204ENST00000456948 KRTAP10-12P60413 245 aa9.24□□□□□ -0.93
CBX3-204ENST00000456948 SPATA8Q6RVD6 105 aa9.21□□□□□ -0.94
CBX3-204ENST00000456948 KRTAP4-8A0A0G2JLE6 195 aa9.19□□□□□ -0.94
CBX3-204ENST00000456948 KRTAP4-8Q9BYQ9 185 aa9.19□□□□□ -0.94
CBX3-204ENST00000456948 KRTAP2-3P0C7H8 128 aa9.14□□□□□ -0.95
CBX3-204ENST00000456948 TMEM258P61165 79 aa9.14□□□□□ -0.95
CBX3-204ENST00000456948 SPINT4Q6UDR6 99 aa9.14□□□□□ -0.95
CBX3-204ENST00000456948 KRTAP2-4Q9BYR9 128 aa9.14□□□□□ -0.95
CBX3-204ENST00000456948 SMIM26A0A096LP01 95 aa9.12□□□□□ -0.95
CBX3-204ENST00000456948 PRR15LQ9BU68 103 aa9.11□□□□□ -0.95
CBX3-204ENST00000456948 LCE1AQ5T7P2 110 aa9.05□□□□□ -0.96
CBX3-204ENST00000456948 KRTAP12-1P59990 96 aa9□□□□□ -0.97
CBX3-204ENST00000456948 SPRR2DP22532 72 aa8.93□□□□□ -0.98
CBX3-204ENST00000456948 LINC01558Q9Y6Z2 57 aa8.92□□□□□ -0.98
CBX3-204ENST00000456948 A8MU10 97 aa8.88□□□□□ -0.99
CBX3-204ENST00000456948 KRTAP2-2Q9BYT5 123 aa8.85□□□□□ -0.99
CBX3-204ENST00000456948 KRTAP2-1Q9BYU5 128 aa8.85□□□□□ -0.99
CBX3-204ENST00000456948 PCP4P48539 62 aa8.76□□□□□ -1.01
CBX3-204ENST00000456948 UQCR11O14957 56 aa8.75□□□□□ -1.01
CBX3-204ENST00000456948 LCE3BQ5TA77 95 aa8.68□□□□□ -1.02
CBX3-204ENST00000456948 TNP1P09430 55 aa8.66□□□□□ -1.02
CBX3-204ENST00000456948 KRTAP19-7Q3SYF9 63 aa8.64□□□□□ -1.03
CBX3-204ENST00000456948 V9GYY9 64 aa8.63□□□□□ -1.03
CBX3-204ENST00000456948 MT1EP04732 61 aa8.59□□□□□ -1.03
CBX3-204ENST00000456948 C10orf95Q9H7T3 257 aa8.57□□□□□ -1.04
CBX3-204ENST00000456948 MIR22HGQ0VDD5 57 aa8.54□□□□□ -1.04
CBX3-204ENST00000456948 KRTAP19-3Q7Z4W3 81 aa8.52□□□□□ -1.05
CBX3-204ENST00000456948 KRTAP19-5Q3LI72 72 aa8.51□□□□□ -1.05
CBX3-204ENST00000456948 K7ERS5 55 aa8.49□□□□□ -1.05
CBX3-204ENST00000456948 Q1T7F1 81 aa8.49□□□□□ -1.05
CBX3-204ENST00000456948 LCE5AQ5TCM9 118 aa8.49□□□□□ -1.05
CBX3-204ENST00000456948 RPS28P62857 69 aaKnown RBP8.48□□□□□ -1.05
CBX3-204ENST00000456948 LOC100996750A0A140TA64 210 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms