RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 KIAA1109Q2LD37 5005 aa7.82□□□□□ -1.16
LDLR-202ENST00000455727 PRAC1Q96KF2 57 aa7.78□□□□□ -1.16
LDLR-202ENST00000455727 MYCBP2O75592 4640 aa7.78□□□□□ -1.16
LDLR-202ENST00000455727 ADM2Q7Z4H4 148 aa7.76□□□□□ -1.17
LDLR-202ENST00000455727 A0A1B0GU33 70 aa7.74□□□□□ -1.17
LDLR-202ENST00000455727 H1FX-AS1Q4G0G2 97 aa7.72□□□□□ -1.17
LDLR-202ENST00000455727 H0YAA0 97 aa7.7□□□□□ -1.18
LDLR-202ENST00000455727 TPRXLQ17RH7 258 aa7.7□□□□□ -1.18
LDLR-202ENST00000455727 KRTAP3-3Q9BYR6 98 aa7.69□□□□□ -1.18
LDLR-202ENST00000455727 EPPK1P58107 5090 aaKnown RBP7.68□□□□□ -1.18
LDLR-202ENST00000455727 S4R3F8 94 aa7.64□□□□□ -1.19
LDLR-202ENST00000455727 KRTAP10-6P60371 365 aaPredicted RBP7.57□□□□□ -1.2
LDLR-202ENST00000455727 KRTAP4-5Q9BYR2 181 aa7.57□□□□□ -1.2
LDLR-202ENST00000455727 LINC01554Q52M75 96 aa7.56□□□□□ -1.2
LDLR-202ENST00000455727 CSAG1Q6PB30 78 aa7.56□□□□□ -1.2
LDLR-202ENST00000455727 LRP2P98164 4655 aa7.55□□□□□ -1.2
LDLR-202ENST00000455727 KRTAP3-2Q9BYR7 98 aa7.53□□□□□ -1.2
LDLR-202ENST00000455727 LPAP08519 4548 aa7.5□□□□□ -1.21
LDLR-202ENST00000455727 ABCA13Q86UQ4 5058 aa7.46□□□□□ -1.22
LDLR-202ENST00000455727 K7ERS5 55 aa7.46□□□□□ -1.22
LDLR-202ENST00000455727 KRTAP13-4Q3LI77 160 aa7.42□□□□□ -1.22
LDLR-202ENST00000455727 P0C880 135 aa7.41□□□□□ -1.22
LDLR-202ENST00000455727 SEC61BP60468 96 aaKnown RBP7.41□□□□□ -1.22
LDLR-202ENST00000455727 J3QL48 77 aa7.37□□□□□ -1.23
LDLR-202ENST00000455727 KRTAP25-1Q3LHN0 102 aa7.36□□□□□ -1.23
LDLR-202ENST00000455727 A0A0D9SG42 100 aa7.3□□□□□ -1.24
LDLR-202ENST00000455727 MUC17Q685J3 4493 aa7.3□□□□□ -1.24
LDLR-202ENST00000455727 HERC2O95714 4834 aa7.3□□□□□ -1.24
LDLR-202ENST00000455727 M0QZ58 72 aa7.27□□□□□ -1.25
LDLR-202ENST00000455727 ROMO1P60602 79 aa7.24□□□□□ -1.25
LDLR-202ENST00000455727 KRTAP4-1Q9BYQ7 146 aa7.24□□□□□ -1.25
LDLR-202ENST00000455727 CRIPTQ9P021 101 aa7.21□□□□□ -1.26
LDLR-202ENST00000455727 BIRC6Q9NR09 4857 aa7.19□□□□□ -1.26
LDLR-202ENST00000455727 KRTAP12-2P59991 146 aa7.17□□□□□ -1.26
LDLR-202ENST00000455727 KRTAP12-1P59990 96 aa7.17□□□□□ -1.26
LDLR-202ENST00000455727 KRTAP19-2Q3LHN2 52 aa7.15□□□□□ -1.26
LDLR-202ENST00000455727 H3BS24 57 aa7.1□□□□□ -1.27
LDLR-202ENST00000455727 SPINT4Q6UDR6 99 aa7.1□□□□□ -1.27
LDLR-202ENST00000455727 R4GN34 69 aa7.07□□□□□ -1.28
LDLR-202ENST00000455727 LORP23490 312 aaPredicted RBP6.98□□□□□ -1.29
LDLR-202ENST00000455727 FLGP20930 4061 aaPredicted RBP6.96□□□□□ -1.3
LDLR-202ENST00000455727 C10orf95Q9H7T3 257 aa6.96□□□□□ -1.3
LDLR-202ENST00000455727 HMCN2Q8NDA2 5059 aa6.9□□□□□ -1.3
LDLR-202ENST00000455727 HERC1Q15751 4861 aa6.89□□□□□ -1.31
LDLR-202ENST00000455727 PCLOQ9Y6V0 5065 aa6.88□□□□□ -1.31
LDLR-202ENST00000455727 MUC2Q02817 5179 aa6.88□□□□□ -1.31
LDLR-202ENST00000455727 LCE2CQ5TA81 110 aa6.78□□□□□ -1.32
LDLR-202ENST00000455727 KRTAP15-1Q3LI76 137 aa6.72□□□□□ -1.33
LDLR-202ENST00000455727 CAMK2N1Q7Z7J9 78 aa6.68□□□□□ -1.34
LDLR-202ENST00000455727 MT1HP80294 61 aa6.59□□□□□ -1.35
LDLR-202ENST00000455727 SPRR2GQ9BYE4 73 aa6.58□□□□□ -1.36
LDLR-202ENST00000455727 FAT4Q6V0I7 4981 aa6.58□□□□□ -1.36
LDLR-202ENST00000455727 M0R2T5 61 aa6.56□□□□□ -1.36
LDLR-202ENST00000455727 RNF213Q63HN8 5207 aa6.55□□□□□ -1.36
LDLR-202ENST00000455727 NDUFAF8A1L188 74 aa6.55□□□□□ -1.36
LDLR-202ENST00000455727 PP632Q6XCG6 107 aa6.54□□□□□ -1.36
LDLR-202ENST00000455727 KRTAP19-1Q8IUB9 90 aa6.51□□□□□ -1.37
LDLR-202ENST00000455727 UBR4Q5T4S7 5183 aa6.49□□□□□ -1.37
LDLR-202ENST00000455727 PLAC4Q8WY50 150 aa6.45□□□□□ -1.38
LDLR-202ENST00000455727 MT2AP02795 61 aa6.44□□□□□ -1.38
LDLR-202ENST00000455727 TNP1P09430 55 aa6.44□□□□□ -1.38
LDLR-202ENST00000455727 KRTAP9-8Q9BYQ0 159 aa6.44□□□□□ -1.38
LDLR-202ENST00000455727 KRTAP23-1A1A580 65 aa6.42□□□□□ -1.38
LDLR-202ENST00000455727 MT1FP04733 61 aa6.42□□□□□ -1.38
LDLR-202ENST00000455727 KRTAP10-10P60014 251 aa6.41□□□□□ -1.38
LDLR-202ENST00000455727 KRTAP19-8Q3LI54 63 aa6.32□□□□□ -1.4
LDLR-202ENST00000455727 MT1BP07438 61 aa6.2□□□□□ -1.42
LDLR-202ENST00000455727 KRTAP9-3Q9BYQ3 159 aa6.18□□□□□ -1.42
LDLR-202ENST00000455727 LUZP6Q538Z0 58 aa6.13□□□□□ -1.43
LDLR-202ENST00000455727 KRTAP10-5P60370 271 aa6.11□□□□□ -1.43
LDLR-202ENST00000455727 MT1XP80297 61 aa6.11□□□□□ -1.43
LDLR-202ENST00000455727 LCE3AQ5TA76 89 aa6.08□□□□□ -1.44
LDLR-202ENST00000455727 A0A0A0MQY5 61 aa6.04□□□□□ -1.44
LDLR-202ENST00000455727 SPRR5A0A1B0GTR4 108 aa6.02□□□□□ -1.45
LDLR-202ENST00000455727 KRTAP8-1Q8IUC2 63 aa6□□□□□ -1.45
LDLR-202ENST00000455727 LCE2AQ5TA79 106 aaPredicted RBP5.99□□□□□ -1.45
LDLR-202ENST00000455727 PRO2289Q9P1D8 64 aa5.96□□□□□ -1.46
LDLR-202ENST00000455727 KRTAP10-12P60413 245 aa5.93□□□□□ -1.46
LDLR-202ENST00000455727 LCE2BO14633 110 aa5.92□□□□□ -1.46
LDLR-202ENST00000455727 KRTAP10-7P60409 375 aaPredicted RBP5.89□□□□□ -1.47
LDLR-202ENST00000455727 KRTAP12-3P60328 96 aa5.83□□□□□ -1.48
LDLR-202ENST00000455727 USH2AO75445 5202 aa5.64□□□□□ -1.51
LDLR-202ENST00000455727 KRTAP19-5Q3LI72 72 aa5.63□□□□□ -1.51
LDLR-202ENST00000455727 KRTAP4-8A0A0G2JLE6 195 aa5.54□□□□□ -1.52
LDLR-202ENST00000455727 KRTAP4-8Q9BYQ9 185 aa5.54□□□□□ -1.52
LDLR-202ENST00000455727 LCE3CQ5T5A8 94 aa5.49□□□□□ -1.53
LDLR-202ENST00000455727 KMT2DO14686 5537 aa5.47□□□□□ -1.53
LDLR-202ENST00000455727 SSPOA2VEC9 5147 aa5.46□□□□□ -1.54
LDLR-202ENST00000455727 KRTAP19-7Q3SYF9 63 aa5.45□□□□□ -1.54
LDLR-202ENST00000455727 KRTAP19-6Q3LI70 58 aa5.43□□□□□ -1.54
LDLR-202ENST00000455727 KRTAP19-4Q3LI73 84 aa5.41□□□□□ -1.54
LDLR-202ENST00000455727 INE1O15225 51 aa5.31□□□□□ -1.56
LDLR-202ENST00000455727 MT1EP04732 61 aa5.31□□□□□ -1.56
LDLR-202ENST00000455727 MT1LQ93083 61 aa5.28□□□□□ -1.56
LDLR-202ENST00000455727 LCE2DQ5TA82 110 aaPredicted RBP5.24□□□□□ -1.57
LDLR-202ENST00000455727 KRTAP9-6A8MVA2 160 aa5.23□□□□□ -1.57
LDLR-202ENST00000455727 KRTAP4-7Q9BYR0 210 aa5.19□□□□□ -1.58
LDLR-202ENST00000455727 FSIP2Q5CZC0 6907 aa5.15□□□□□ -1.58
LDLR-202ENST00000455727 FCGBPQ9Y6R7 5405 aaPredicted RBP5.06□□□□□ -1.6
LDLR-202ENST00000455727 KRTAP2-3P0C7H8 128 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms