RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 Q5VV11 94 aa9.53□□□□□ -0.88
HMGB3-205ENST00000455596 MT1BP07438 61 aa9.51□□□□□ -0.89
HMGB3-205ENST00000455596 KRTAP19-8Q3LI54 63 aa9.51□□□□□ -0.89
HMGB3-205ENST00000455596 A0A1B0GV90 55 aa9.48□□□□□ -0.89
HMGB3-205ENST00000455596 SYNE2Q8WXH0 6885 aaKnown RBP9.47□□□□□ -0.89
HMGB3-205ENST00000455596 A6NN06 94 aa9.44□□□□□ -0.9
HMGB3-205ENST00000455596 NDUFC1O43677 76 aa9.44□□□□□ -0.9
HMGB3-205ENST00000455596 LINC00208Q96KT6 92 aa9.44□□□□□ -0.9
HMGB3-205ENST00000455596 IMUPQ9GZP8 106 aa9.44□□□□□ -0.9
HMGB3-205ENST00000455596 CRIPTQ9P021 101 aa9.42□□□□□ -0.9
HMGB3-205ENST00000455596 A8MUN3 132 aa9.41□□□□□ -0.9
HMGB3-205ENST00000455596 MP68P56378 58 aa9.39□□□□□ -0.91
HMGB3-205ENST00000455596 KRTAP6-3Q3LI67 103 aa9.39□□□□□ -0.91
HMGB3-205ENST00000455596 OCR1Q9BZK8 76 aa9.39□□□□□ -0.91
HMGB3-205ENST00000455596 H0YAA0 97 aa9.36□□□□□ -0.91
HMGB3-205ENST00000455596 J3QR89 54 aa9.33□□□□□ -0.92
HMGB3-205ENST00000455596 KRTAP10-5P60370 271 aa9.31□□□□□ -0.92
HMGB3-205ENST00000455596 ADM2Q7Z4H4 148 aa9.26□□□□□ -0.93
HMGB3-205ENST00000455596 H3BPC8 53 aa9.25□□□□□ -0.93
HMGB3-205ENST00000455596 SCGB1A1P11684 91 aa9.21□□□□□ -0.94
HMGB3-205ENST00000455596 DMAC1Q96GE9 116 aa9.14□□□□□ -0.95
HMGB3-205ENST00000455596 C20orf197Q8N268 126 aa9.05□□□□□ -0.96
HMGB3-205ENST00000455596 R4GN34 69 aa9.04□□□□□ -0.96
HMGB3-205ENST00000455596 P0C880 135 aa9.02□□□□□ -0.97
HMGB3-205ENST00000455596 PLAC4Q8WY50 150 aa8.99□□□□□ -0.97
HMGB3-205ENST00000455596 PRO2289Q9P1D8 64 aa8.98□□□□□ -0.97
HMGB3-205ENST00000455596 MT-ATP8P03928 68 aa8.97□□□□□ -0.97
HMGB3-205ENST00000455596 TRAV7A0A075B6U4 112 aa8.96□□□□□ -0.98
HMGB3-205ENST00000455596 M0QZ58 72 aa8.96□□□□□ -0.98
HMGB3-205ENST00000455596 K7ERU9 68 aa8.95□□□□□ -0.98
HMGB3-205ENST00000455596 KRTAP5-9P26371 169 aa8.95□□□□□ -0.98
HMGB3-205ENST00000455596 SMIM20Q8N5G0 67 aa8.95□□□□□ -0.98
HMGB3-205ENST00000455596 ACYP2P14621 99 aa8.93□□□□□ -0.98
HMGB3-205ENST00000455596 KRTAP3-2Q9BYR7 98 aa8.92□□□□□ -0.98
HMGB3-205ENST00000455596 MT1XP80297 61 aa8.91□□□□□ -0.98
HMGB3-205ENST00000455596 NEBP20929 6669 aa8.86□□□□□ -0.99
HMGB3-205ENST00000455596 SPTSSBQ8NFR3 76 aa8.84□□□□□ -0.99
HMGB3-205ENST00000455596 LINC01554Q52M75 96 aa8.82□□□□□ -1
HMGB3-205ENST00000455596 MUC12Q9UKN1 5478 aa8.8□□□□□ -1
HMGB3-205ENST00000455596 CHKB-CPT1BH3BT56 60 aa8.77□□□□□ -1.01
HMGB3-205ENST00000455596 SNURFQ9Y675 71 aa8.75□□□□□ -1.01
HMGB3-205ENST00000455596 KRTAP12-2P59991 146 aa8.72□□□□□ -1.01
HMGB3-205ENST00000455596 KRTAP20-1Q3LI63 56 aa8.71□□□□□ -1.02
HMGB3-205ENST00000455596 SPRR2FQ96RM1 72 aa8.69□□□□□ -1.02
HMGB3-205ENST00000455596 KRTAP8-1Q8IUC2 63 aa8.67□□□□□ -1.02
HMGB3-205ENST00000455596 KMT2DO14686 5537 aa8.66□□□□□ -1.02
HMGB3-205ENST00000455596 SPANXA2-OT1Q8N9U9 137 aa8.66□□□□□ -1.02
HMGB3-205ENST00000455596 SERP2Q8N6R1 65 aa8.62□□□□□ -1.03
HMGB3-205ENST00000455596 SPRR2EP22531 72 aa8.58□□□□□ -1.04
HMGB3-205ENST00000455596 SPRR2BP35325 72 aa8.58□□□□□ -1.04
HMGB3-205ENST00000455596 SPRR2AP35326 72 aa8.58□□□□□ -1.04
HMGB3-205ENST00000455596 KRTAP4-8A0A0G2JLE6 195 aa8.53□□□□□ -1.04
HMGB3-205ENST00000455596 KRTAP4-8Q9BYQ9 185 aa8.53□□□□□ -1.04
HMGB3-205ENST00000455596 MDN1Q9NU22 5596 aa8.52□□□□□ -1.04
HMGB3-205ENST00000455596 KRTAP10-7P60409 375 aaPredicted RBP8.51□□□□□ -1.05
HMGB3-205ENST00000455596 KRTAP2-3P0C7H8 128 aa8.48□□□□□ -1.05
HMGB3-205ENST00000455596 KRTAP2-4Q9BYR9 128 aa8.48□□□□□ -1.05
HMGB3-205ENST00000455596 KRTAP10-12P60413 245 aa8.47□□□□□ -1.05
HMGB3-205ENST00000455596 LCE1AQ5T7P2 110 aa8.44□□□□□ -1.06
HMGB3-205ENST00000455596 KRTAP13-4Q3LI77 160 aa8.42□□□□□ -1.06
HMGB3-205ENST00000455596 COA5Q86WW8 74 aa8.41□□□□□ -1.06
HMGB3-205ENST00000455596 COX7CP15954 63 aa8.35□□□□□ -1.07
HMGB3-205ENST00000455596 SEC61GP60059 68 aa8.31□□□□□ -1.08
HMGB3-205ENST00000455596 CAMK2N1Q7Z7J9 78 aa8.31□□□□□ -1.08
HMGB3-205ENST00000455596 SPRR2DP22532 72 aa8.29□□□□□ -1.08
HMGB3-205ENST00000455596 SERP1Q9Y6X1 66 aa8.29□□□□□ -1.08
HMGB3-205ENST00000455596 H7BZZ5 65 aa8.22□□□□□ -1.09
HMGB3-205ENST00000455596 KRTAP2-2Q9BYT5 123 aa8.21□□□□□ -1.1
HMGB3-205ENST00000455596 KRTAP2-1Q9BYU5 128 aa8.21□□□□□ -1.1
HMGB3-205ENST00000455596 CYSTM1Q9H1C7 97 aa8.19□□□□□ -1.1
HMGB3-205ENST00000455596 A0A0D9SG42 100 aa8.17□□□□□ -1.1
HMGB3-205ENST00000455596 SPATA8Q6RVD6 105 aa8.16□□□□□ -1.1
HMGB3-205ENST00000455596 A0A1B0GU33 70 aa8.15□□□□□ -1.1
HMGB3-205ENST00000455596 SPINT4Q6UDR6 99 aa8.08□□□□□ -1.12
HMGB3-205ENST00000455596 LCE3BQ5TA77 95 aa8.07□□□□□ -1.12
HMGB3-205ENST00000455596 ANAPC13Q9BS18 74 aa8.03□□□□□ -1.12
HMGB3-205ENST00000455596 A0A1B0GU69 56 aa8.01□□□□□ -1.13
HMGB3-205ENST00000455596 KRTAP12-1P59990 96 aa8□□□□□ -1.13
HMGB3-205ENST00000455596 KRTAP19-7Q3SYF9 63 aa7.96□□□□□ -1.14
HMGB3-205ENST00000455596 SMIM26A0A096LP01 95 aa7.93□□□□□ -1.14
HMGB3-205ENST00000455596 MT1EP04732 61 aa7.9□□□□□ -1.14
HMGB3-205ENST00000455596 LCE5AQ5TCM9 118 aa7.87□□□□□ -1.15
HMGB3-205ENST00000455596 CCDC179H3BU77 68 aa7.86□□□□□ -1.15
HMGB3-205ENST00000455596 KRTAP19-3Q7Z4W3 81 aa7.85□□□□□ -1.15
HMGB3-205ENST00000455596 A8MU10 97 aa7.84□□□□□ -1.15
HMGB3-205ENST00000455596 ATP5EP56381 51 aaPredicted RBP7.81□□□□□ -1.16
HMGB3-205ENST00000455596 KRTAP19-5Q3LI72 72 aa7.77□□□□□ -1.17
HMGB3-205ENST00000455596 PRR15LQ9BU68 103 aa7.77□□□□□ -1.17
HMGB3-205ENST00000455596 MT1GP13640 62 aa7.67□□□□□ -1.18
HMGB3-205ENST00000455596 LINC01558Q9Y6Z2 57 aa7.67□□□□□ -1.18
HMGB3-205ENST00000455596 TNP1P09430 55 aa7.66□□□□□ -1.18
HMGB3-205ENST00000455596 DSTQ03001 7570 aaKnown RBP7.66□□□□□ -1.18
HMGB3-205ENST00000455596 C10orf95Q9H7T3 257 aa7.65□□□□□ -1.18
HMGB3-205ENST00000455596 PP632Q6XCG6 107 aa7.63□□□□□ -1.19
HMGB3-205ENST00000455596 LCE3AQ5TA76 89 aa7.6□□□□□ -1.19
HMGB3-205ENST00000455596 TMEM258P61165 79 aa7.58□□□□□ -1.2
HMGB3-205ENST00000455596 MT1LQ93083 61 aa7.55□□□□□ -1.2
HMGB3-205ENST00000455596 MT1MQ8N339 61 aa7.52□□□□□ -1.21
HMGB3-205ENST00000455596 UQCR11O14957 56 aa7.5□□□□□ -1.21
HMGB3-205ENST00000455596 KRTAP4-9Q9BYQ8 210 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 416 ms