RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 KRTAP19-2Q3LHN2 52 aa4.47□□□□□ -1.69
SYNE1-214ENST00000454018 SCGB1A1P11684 91 aa4.46□□□□□ -1.69
SYNE1-214ENST00000454018 COX6B2Q6YFQ2 88 aa4.46□□□□□ -1.69
SYNE1-214ENST00000454018 RBM12B-AS1Q9P1G2 102 aa4.46□□□□□ -1.69
SYNE1-214ENST00000454018 FAM236AA0A1B0GUQ0 79 aa4.46□□□□□ -1.7
SYNE1-214ENST00000454018 FAM236BA0A1B0GV22 79 aa4.46□□□□□ -1.7
SYNE1-214ENST00000454018 ATOX1O00244 68 aa4.46□□□□□ -1.7
SYNE1-214ENST00000454018 H0Y9P7 68 aa4.44□□□□□ -1.7
SYNE1-214ENST00000454018 FAM236DA0A1B0GTK5 79 aa4.43□□□□□ -1.7
SYNE1-214ENST00000454018 LOC101927531A0A1B0GV80 90 aa4.43□□□□□ -1.7
SYNE1-214ENST00000454018 FAM236CP0DP71 79 aa4.43□□□□□ -1.7
SYNE1-214ENST00000454018 SMIM20Q8N5G0 67 aa4.43□□□□□ -1.7
SYNE1-214ENST00000454018 LCE1AQ5T7P2 110 aa4.42□□□□□ -1.7
SYNE1-214ENST00000454018 SMIM26A0A096LP01 95 aa4.41□□□□□ -1.7
SYNE1-214ENST00000454018 MP68P56378 58 aa4.41□□□□□ -1.7
SYNE1-214ENST00000454018 FAT4Q6V0I7 4981 aa4.41□□□□□ -1.7
SYNE1-214ENST00000454018 CYP4F30PQ9H0H9 118 aa4.4□□□□□ -1.71
SYNE1-214ENST00000454018 H3BPC8 53 aa4.39□□□□□ -1.71
SYNE1-214ENST00000454018 C1orf64Q8NEQ6 169 aa4.39□□□□□ -1.71
SYNE1-214ENST00000454018 TRAV7A0A075B6U4 112 aa4.38□□□□□ -1.71
SYNE1-214ENST00000454018 MT1HP80294 61 aa4.38□□□□□ -1.71
SYNE1-214ENST00000454018 LINC00208Q96KT6 92 aa4.38□□□□□ -1.71
SYNE1-214ENST00000454018 FLGP20930 4061 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-214ENST00000454018 C4orf26Q17RF5 130 aa4.36□□□□□ -1.71
SYNE1-214ENST00000454018 CAMK2N1Q7Z7J9 78 aa4.34□□□□□ -1.71
SYNE1-214ENST00000454018 M0R2T5 61 aa4.33□□□□□ -1.72
SYNE1-214ENST00000454018 H1FX-AS1Q4G0G2 97 aa4.33□□□□□ -1.72
SYNE1-214ENST00000454018 SERP2Q8N6R1 65 aa4.33□□□□□ -1.72
SYNE1-214ENST00000454018 KLKP1Q107X0 134 aa4.31□□□□□ -1.72
SYNE1-214ENST00000454018 A8MUN3 132 aa4.28□□□□□ -1.72
SYNE1-214ENST00000454018 PSPHP1O15172 72 aa4.28□□□□□ -1.72
SYNE1-214ENST00000454018 KRTAP10-6P60371 365 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-214ENST00000454018 C20orf197Q8N268 126 aa4.26□□□□□ -1.73
SYNE1-214ENST00000454018 COX7CP15954 63 aa4.26□□□□□ -1.73
SYNE1-214ENST00000454018 SNURFQ9Y675 71 aa4.26□□□□□ -1.73
SYNE1-214ENST00000454018 S4R3F8 94 aa4.25□□□□□ -1.73
SYNE1-214ENST00000454018 ANAPC13Q9BS18 74 aa4.24□□□□□ -1.73
SYNE1-214ENST00000454018 DMAC1Q96GE9 116 aa4.23□□□□□ -1.73
SYNE1-214ENST00000454018 PRO0628Q9UI54 55 aa4.23□□□□□ -1.73
SYNE1-214ENST00000454018 LCA10Q71F78 164 aa4.21□□□□□ -1.73
SYNE1-214ENST00000454018 MT3P25713 68 aa4.2□□□□□ -1.74
SYNE1-214ENST00000454018 SPANXA2-OT1Q8N9U9 137 aa4.2□□□□□ -1.74
SYNE1-214ENST00000454018 NDUFC1O43677 76 aa4.19□□□□□ -1.74
SYNE1-214ENST00000454018 CSAG1Q6PB30 78 aa4.18□□□□□ -1.74
SYNE1-214ENST00000454018 ACYP2P14621 99 aa4.16□□□□□ -1.74
SYNE1-214ENST00000454018 MT2AP02795 61 aa4.15□□□□□ -1.75
SYNE1-214ENST00000454018 H7BZZ5 65 aa4.14□□□□□ -1.75
SYNE1-214ENST00000454018 CYSTM1Q9H1C7 97 aa4.13□□□□□ -1.75
SYNE1-214ENST00000454018 CCDC179H3BU77 68 aa4.12□□□□□ -1.75
SYNE1-214ENST00000454018 MT1FP04733 61 aa4.11□□□□□ -1.75
SYNE1-214ENST00000454018 KRTAP10-10P60014 251 aa4.1□□□□□ -1.75
SYNE1-214ENST00000454018 CHKB-CPT1BH3BT56 60 aa4.09□□□□□ -1.75
SYNE1-214ENST00000454018 SPTSSBQ8NFR3 76 aa4.09□□□□□ -1.75
SYNE1-214ENST00000454018 H0YAA0 97 aa4.08□□□□□ -1.76
SYNE1-214ENST00000454018 ATP5EP56381 51 aaPredicted RBP4.05□□□□□ -1.76
SYNE1-214ENST00000454018 COA5Q86WW8 74 aa4.05□□□□□ -1.76
SYNE1-214ENST00000454018 LUZP6Q538Z0 58 aa4.04□□□□□ -1.76
SYNE1-214ENST00000454018 TMEM258P61165 79 aa4.03□□□□□ -1.76
SYNE1-214ENST00000454018 LCE1FQ5T754 118 aa4.02□□□□□ -1.77
SYNE1-214ENST00000454018 ADM2Q7Z4H4 148 aa4□□□□□ -1.77
SYNE1-214ENST00000454018 CRIPTQ9P021 101 aa4□□□□□ -1.77
SYNE1-214ENST00000454018 KRTAP2-2Q9BYT5 123 aa3.99□□□□□ -1.77
SYNE1-214ENST00000454018 SPRR2GQ9BYE4 73 aa3.95□□□□□ -1.78
SYNE1-214ENST00000454018 P0C880 135 aa3.95□□□□□ -1.78
SYNE1-214ENST00000454018 R4GN34 69 aa3.91□□□□□ -1.78
SYNE1-214ENST00000454018 SERP1Q9Y6X1 66 aa3.89□□□□□ -1.79
SYNE1-214ENST00000454018 M0QZ58 72 aa3.88□□□□□ -1.79
SYNE1-214ENST00000454018 KRTAP19-8Q3LI54 63 aa3.88□□□□□ -1.79
SYNE1-214ENST00000454018 CRCT1Q9UGL9 99 aa3.88□□□□□ -1.79
SYNE1-214ENST00000454018 Q5VV11 94 aa3.87□□□□□ -1.79
SYNE1-214ENST00000454018 USH2AO75445 5202 aa3.87□□□□□ -1.79
SYNE1-214ENST00000454018 FSIP2Q5CZC0 6907 aa3.85□□□□□ -1.79
SYNE1-214ENST00000454018 A0A1B0GU69 56 aa3.85□□□□□ -1.79
SYNE1-214ENST00000454018 MT1BP07438 61 aa3.84□□□□□ -1.8
SYNE1-214ENST00000454018 K7ERS5 55 aa3.82□□□□□ -1.8
SYNE1-214ENST00000454018 PRR15LQ9BU68 103 aa3.81□□□□□ -1.8
SYNE1-214ENST00000454018 LINC01558Q9Y6Z2 57 aa3.81□□□□□ -1.8
SYNE1-214ENST00000454018 KRTAP19-6Q3LI70 58 aa3.8□□□□□ -1.8
SYNE1-214ENST00000454018 PMAIP1Q13794 54 aa3.8□□□□□ -1.8
SYNE1-214ENST00000454018 LINC01554Q52M75 96 aa3.8□□□□□ -1.8
SYNE1-214ENST00000454018 A0A1B0GU33 70 aa3.79□□□□□ -1.8
SYNE1-214ENST00000454018 SSPOA2VEC9 5147 aa3.78□□□□□ -1.8
SYNE1-214ENST00000454018 KRTAP13-4Q3LI77 160 aa3.78□□□□□ -1.8
SYNE1-214ENST00000454018 A6NED7 52 aa3.77□□□□□ -1.81
SYNE1-214ENST00000454018 A6NN06 94 aa3.76□□□□□ -1.81
SYNE1-214ENST00000454018 PLAC4Q8WY50 150 aa3.76□□□□□ -1.81
SYNE1-214ENST00000454018 KRTAP10-12P60413 245 aa3.75□□□□□ -1.81
SYNE1-214ENST00000454018 RPS28P62857 69 aaKnown RBP3.75□□□□□ -1.81
SYNE1-214ENST00000454018 Q1T7F1 81 aa3.73□□□□□ -1.81
SYNE1-214ENST00000454018 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-214ENST00000454018 SPATA8Q6RVD6 105 aa3.73□□□□□ -1.81
SYNE1-214ENST00000454018 A8MU10 97 aa3.72□□□□□ -1.81
SYNE1-214ENST00000454018 LCE3CQ5T5A8 94 aa3.72□□□□□ -1.81
SYNE1-214ENST00000454018 KRTAP10-5P60370 271 aa3.71□□□□□ -1.82
SYNE1-214ENST00000454018 PRO2289Q9P1D8 64 aa3.7□□□□□ -1.82
SYNE1-214ENST00000454018 A0A0D9SG42 100 aa3.69□□□□□ -1.82
SYNE1-214ENST00000454018 UQCR11O14957 56 aa3.69□□□□□ -1.82
SYNE1-214ENST00000454018 FCGBPQ9Y6R7 5405 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-214ENST00000454018 MT1XP80297 61 aa3.66□□□□□ -1.82
SYNE1-214ENST00000454018 KRTAP12-1P59990 96 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms