RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	C5orf47	Q569G3	176 aa		4.05	□□□□□ -1.76
RFX3-209	ENST00000451859	KRTAP19-6	Q3LI70	58 aa		4.04	□□□□□ -1.76
RFX3-209	ENST00000451859	KRTAP5-4	Q6L8H1	288 aa		4.03	□□□□□ -1.76
RFX3-209	ENST00000451859	SVIP	Q8NHG7	77 aa		4.03	□□□□□ -1.76
RFX3-209	ENST00000451859	FAM236A	A0A1B0GUQ0	79 aa		4.02	□□□□□ -1.77
RFX3-209	ENST00000451859	FAM236B	A0A1B0GV22	79 aa		4.02	□□□□□ -1.77
RFX3-209	ENST00000451859	PCP4L1	A6NKN8	68 aa		4.02	□□□□□ -1.77
RFX3-209	ENST00000451859	KRTAP5-9	P26371	169 aa		4.02	□□□□□ -1.77
RFX3-209	ENST00000451859	GTF2H5	Q6ZYL4	71 aa		4.02	□□□□□ -1.77
RFX3-209	ENST00000451859	ETDB	Q3ZM63	59 aa		4.01	□□□□□ -1.77
RFX3-209	ENST00000451859	C1orf64	Q8NEQ6	169 aa		4.01	□□□□□ -1.77
RFX3-209	ENST00000451859	KRTAP4-4	Q9BYR3	166 aa		4.01	□□□□□ -1.77
RFX3-209	ENST00000451859		S4R3F8	94 aa		4.01	□□□□□ -1.77
RFX3-209	ENST00000451859	MACF1	Q9UPN3	7388 aa	Known RBP	3.99	□□□□□ -1.77
RFX3-209	ENST00000451859		F8W1H4	67 aa		3.98	□□□□□ -1.77
RFX3-209	ENST00000451859	LCA10	Q71F78	164 aa		3.98	□□□□□ -1.77
RFX3-209	ENST00000451859	TP53AIP1	Q9HCN2	124 aa		3.98	□□□□□ -1.77
RFX3-209	ENST00000451859	CSAG1	Q6PB30	78 aa		3.96	□□□□□ -1.78
RFX3-209	ENST00000451859	CYP4F30P	Q9H0H9	118 aa		3.93	□□□□□ -1.78
RFX3-209	ENST00000451859	SYNE2	Q8WXH0	6885 aa	Known RBP	3.93	□□□□□ -1.78
RFX3-209	ENST00000451859	TRAV22	A0A0B4J277	110 aa		3.92	□□□□□ -1.78
RFX3-209	ENST00000451859	HIST1H4A	P62805	103 aa	Known RBP	3.91	□□□□□ -1.78
RFX3-209	ENST00000451859		Q5VV11	94 aa		3.91	□□□□□ -1.78
RFX3-209	ENST00000451859		A0A087WVE0	104 aa		3.9	□□□□□ -1.79
RFX3-209	ENST00000451859	LOC101927531	A0A1B0GV80	90 aa		3.89	□□□□□ -1.79
RFX3-209	ENST00000451859	MT1B	P07438	61 aa		3.89	□□□□□ -1.79
RFX3-209	ENST00000451859		A6NN06	94 aa		3.88	□□□□□ -1.79
RFX3-209	ENST00000451859		H0Y9P7	68 aa		3.88	□□□□□ -1.79
RFX3-209	ENST00000451859	ACYP1	P07311	99 aa		3.88	□□□□□ -1.79
RFX3-209	ENST00000451859	SPRR2G	Q9BYE4	73 aa		3.88	□□□□□ -1.79
RFX3-209	ENST00000451859	KLKP1	Q107X0	134 aa		3.87	□□□□□ -1.79
RFX3-209	ENST00000451859	ATP5EP2	Q5VTU8	51 aa		3.87	□□□□□ -1.79
RFX3-209	ENST00000451859	FAM240A	A0A1B0GVK7	77 aa		3.86	□□□□□ -1.79
RFX3-209	ENST00000451859	KRTAP6-3	Q3LI67	103 aa		3.86	□□□□□ -1.79
RFX3-209	ENST00000451859	UQCRQ	O14949	82 aa		3.85	□□□□□ -1.79
RFX3-209	ENST00000451859	KRTAP19-8	Q3LI54	63 aa		3.85	□□□□□ -1.79
RFX3-209	ENST00000451859	ATOX1	O00244	68 aa		3.83	□□□□□ -1.8
RFX3-209	ENST00000451859	NDUFC1	O43677	76 aa		3.82	□□□□□ -1.8
RFX3-209	ENST00000451859	IMUP	Q9GZP8	106 aa		3.81	□□□□□ -1.8
RFX3-209	ENST00000451859	KRTAP10-5	P60370	271 aa		3.8	□□□□□ -1.8
RFX3-209	ENST00000451859	LINC00643	Q86TS7	51 aa		3.8	□□□□□ -1.8
RFX3-209	ENST00000451859	LINC00208	Q96KT6	92 aa		3.8	□□□□□ -1.8
RFX3-209	ENST00000451859	MUC12	Q9UKN1	5478 aa		3.8	□□□□□ -1.8
RFX3-209	ENST00000451859	CRIPT	Q9P021	101 aa		3.79	□□□□□ -1.8
RFX3-209	ENST00000451859		A0A1B0GV90	55 aa		3.77	□□□□□ -1.81
RFX3-209	ENST00000451859	ADM2	Q7Z4H4	148 aa		3.77	□□□□□ -1.81
RFX3-209	ENST00000451859		A8MUN3	132 aa		3.76	□□□□□ -1.81
RFX3-209	ENST00000451859	MP68	P56378	58 aa		3.76	□□□□□ -1.81
RFX3-209	ENST00000451859	OCR1	Q9BZK8	76 aa		3.75	□□□□□ -1.81
RFX3-209	ENST00000451859		H0YAA0	97 aa		3.73	□□□□□ -1.81
RFX3-209	ENST00000451859	NEB	P20929	6669 aa		3.71	□□□□□ -1.82
RFX3-209	ENST00000451859	KRTAP9-6	A8MVA2	160 aa		3.71	□□□□□ -1.82
RFX3-209	ENST00000451859	KMT2D	O14686	5537 aa		3.7	□□□□□ -1.82
RFX3-209	ENST00000451859	SCGB1A1	P11684	91 aa		3.69	□□□□□ -1.82
RFX3-209	ENST00000451859		P0C880	135 aa		3.68	□□□□□ -1.82
RFX3-209	ENST00000451859	MDN1	Q9NU22	5596 aa		3.68	□□□□□ -1.82
RFX3-209	ENST00000451859		J3QR89	54 aa		3.67	□□□□□ -1.82
RFX3-209	ENST00000451859		R4GN34	69 aa		3.67	□□□□□ -1.82
RFX3-209	ENST00000451859		H3BPC8	53 aa		3.66	□□□□□ -1.82
RFX3-209	ENST00000451859	PLAC4	Q8WY50	150 aa		3.66	□□□□□ -1.82
RFX3-209	ENST00000451859	DMAC1	Q96GE9	116 aa		3.66	□□□□□ -1.82
RFX3-209	ENST00000451859		M0QZ58	72 aa		3.65	□□□□□ -1.83
RFX3-209	ENST00000451859	MT1X	P80297	61 aa		3.64	□□□□□ -1.83
RFX3-209	ENST00000451859	LINC01554	Q52M75	96 aa		3.64	□□□□□ -1.83
RFX3-209	ENST00000451859	C20orf197	Q8N268	126 aa		3.64	□□□□□ -1.83
RFX3-209	ENST00000451859	PRO2289	Q9P1D8	64 aa		3.64	□□□□□ -1.83
RFX3-209	ENST00000451859	KRTAP20-1	Q3LI63	56 aa		3.63	□□□□□ -1.83
RFX3-209	ENST00000451859	MT3	P25713	68 aa		3.61	□□□□□ -1.83
RFX3-209	ENST00000451859	SPRR2F	Q96RM1	72 aa		3.61	□□□□□ -1.83
RFX3-209	ENST00000451859	MT-ATP8	P03928	68 aa		3.58	□□□□□ -1.84
RFX3-209	ENST00000451859	KRTAP8-1	Q8IUC2	63 aa		3.58	□□□□□ -1.84
RFX3-209	ENST00000451859	TRAV7	A0A075B6U4	112 aa		3.56	□□□□□ -1.84
RFX3-209	ENST00000451859	ACYP2	P14621	99 aa		3.56	□□□□□ -1.84
RFX3-209	ENST00000451859	SPRR2E	P22531	72 aa		3.56	□□□□□ -1.84
RFX3-209	ENST00000451859	SPRR2B	P35325	72 aa		3.56	□□□□□ -1.84
RFX3-209	ENST00000451859	SPRR2A	P35326	72 aa		3.56	□□□□□ -1.84
RFX3-209	ENST00000451859	CHKB-CPT1B	H3BT56	60 aa		3.54	□□□□□ -1.84
RFX3-209	ENST00000451859	KRTAP12-2	P59991	146 aa		3.53	□□□□□ -1.84
RFX3-209	ENST00000451859	SMIM20	Q8N5G0	67 aa		3.53	□□□□□ -1.84
RFX3-209	ENST00000451859	SPTSSB	Q8NFR3	76 aa		3.53	□□□□□ -1.84
RFX3-209	ENST00000451859	SNURF	Q9Y675	71 aa		3.53	□□□□□ -1.84
RFX3-209	ENST00000451859		K7ERU9	68 aa		3.52	□□□□□ -1.85
RFX3-209	ENST00000451859	OBSCN	Q5VST9	7968 aa		3.5	□□□□□ -1.85
RFX3-209	ENST00000451859	KRTAP2-3	P0C7H8	128 aa		3.49	□□□□□ -1.85
RFX3-209	ENST00000451859	KRTAP4-3	Q9BYR4	195 aa		3.49	□□□□□ -1.85
RFX3-209	ENST00000451859	KRTAP2-4	Q9BYR9	128 aa		3.49	□□□□□ -1.85
RFX3-209	ENST00000451859	KRTAP10-12	P60413	245 aa		3.45	□□□□□ -1.86
RFX3-209	ENST00000451859	SPRR2D	P22532	72 aa		3.44	□□□□□ -1.86
RFX3-209	ENST00000451859	KRTAP13-4	Q3LI77	160 aa		3.42	□□□□□ -1.86
RFX3-209	ENST00000451859	KRTAP5-2	Q701N4	177 aa		3.42	□□□□□ -1.86
RFX3-209	ENST00000451859	SPANXA2-OT1	Q8N9U9	137 aa		3.42	□□□□□ -1.86
RFX3-209	ENST00000451859	SERP2	Q8N6R1	65 aa		3.41	□□□□□ -1.86
RFX3-209	ENST00000451859	CAMK2N1	Q7Z7J9	78 aa		3.39	□□□□□ -1.87
RFX3-209	ENST00000451859	KRTAP2-1	Q9BYU5	128 aa		3.39	□□□□□ -1.87
RFX3-209	ENST00000451859	COA5	Q86WW8	74 aa		3.37	□□□□□ -1.87
RFX3-209	ENST00000451859		A0A0D9SG42	100 aa		3.35	□□□□□ -1.87
RFX3-209	ENST00000451859	LCE1F	Q5T754	118 aa		3.33	□□□□□ -1.88
RFX3-209	ENST00000451859	SEC61G	P60059	68 aa		3.32	□□□□□ -1.88
RFX3-209	ENST00000451859	SERP1	Q9Y6X1	66 aa		3.32	□□□□□ -1.88
RFX3-209	ENST00000451859	SPATA8	Q6RVD6	105 aa		3.31	□□□□□ -1.88

Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms