RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 FLG2Q5D862 2391 aaPredicted RBP10.33□□□□□ -0.76
HMGA1-205ENST00000447654 A0A0A0MQY5 61 aa10.32□□□□□ -0.76
HMGA1-205ENST00000447654 KRTAP17-1Q9BYP8 105 aa10.31□□□□□ -0.76
HMGA1-205ENST00000447654 KRTAP3-1Q9BYR8 98 aa10.26□□□□□ -0.77
HMGA1-205ENST00000447654 A0A1B0GVY2 172 aa10.25□□□□□ -0.77
HMGA1-205ENST00000447654 SMR3BP02814 79 aaPredicted RBP10.25□□□□□ -0.77
HMGA1-205ENST00000447654 HERC2O95714 4834 aa10.21□□□□□ -0.77
HMGA1-205ENST00000447654 PKHD1L1Q86WI1 4243 aa10.16□□□□□ -0.78
HMGA1-205ENST00000447654 KRTAP10-4P60372 401 aaPredicted RBP10.14□□□□□ -0.79
HMGA1-205ENST00000447654 RPS29P62273 56 aaKnown RBP10.11□□□□□ -0.79
HMGA1-205ENST00000447654 LRP1Q07954 4544 aaKnown RBP10.05□□□□□ -0.8
HMGA1-205ENST00000447654 C10orf95Q9H7T3 257 aa10.04□□□□□ -0.8
HMGA1-205ENST00000447654 HSPG2P98160 4391 aa10.03□□□□□ -0.8
HMGA1-205ENST00000447654 KRTAP10-6P60371 365 aaPredicted RBP10.02□□□□□ -0.8
HMGA1-205ENST00000447654 PCLOQ9Y6V0 5065 aa10.02□□□□□ -0.81
HMGA1-205ENST00000447654 KRTAP13-4Q3LI77 160 aa9.97□□□□□ -0.81
HMGA1-205ENST00000447654 TNXBP22105 4242 aa9.94□□□□□ -0.82
HMGA1-205ENST00000447654 KIAA1109Q2LD37 5005 aa9.94□□□□□ -0.82
HMGA1-205ENST00000447654 A0A0D9SG42 100 aa9.92□□□□□ -0.82
HMGA1-205ENST00000447654 S4R3F8 94 aa9.91□□□□□ -0.82
HMGA1-205ENST00000447654 RYR1P21817 5038 aa9.9□□□□□ -0.82
HMGA1-205ENST00000447654 LUZP6Q538Z0 58 aa9.9□□□□□ -0.83
HMGA1-205ENST00000447654 KRTAP3-2Q9BYR7 98 aa9.87□□□□□ -0.83
HMGA1-205ENST00000447654 FAT3Q8TDW7 4589 aa9.87□□□□□ -0.83
HMGA1-205ENST00000447654 XP32Q5T750 250 aa9.85□□□□□ -0.83
HMGA1-205ENST00000447654 MYCBP2O75592 4640 aa9.82□□□□□ -0.84
HMGA1-205ENST00000447654 C9orf92A6NGG3 77 aa9.81□□□□□ -0.84
HMGA1-205ENST00000447654 KRTAP3-3Q9BYR6 98 aa9.79□□□□□ -0.84
HMGA1-205ENST00000447654 ABCA13Q86UQ4 5058 aa9.76□□□□□ -0.85
HMGA1-205ENST00000447654 KRTAP12-2P59991 146 aa9.74□□□□□ -0.85
HMGA1-205ENST00000447654 Q5VSD8 79 aa9.74□□□□□ -0.85
HMGA1-205ENST00000447654 DMBT1Q9UGM3 2413 aaPredicted RBP9.71□□□□□ -0.85
HMGA1-205ENST00000447654 KRTAP12-1P59990 96 aa9.68□□□□□ -0.86
HMGA1-205ENST00000447654 KRTAP10-8P60410 259 aa9.67□□□□□ -0.86
HMGA1-205ENST00000447654 KRTAP4-5Q9BYR2 181 aa9.67□□□□□ -0.86
HMGA1-205ENST00000447654 PLAC4Q8WY50 150 aa9.55□□□□□ -0.88
HMGA1-205ENST00000447654 M0QZ58 72 aa9.53□□□□□ -0.88
HMGA1-205ENST00000447654 MT1HL1P0DM35 61 aa9.49□□□□□ -0.89
HMGA1-205ENST00000447654 LPAP08519 4548 aa9.43□□□□□ -0.9
HMGA1-205ENST00000447654 HERC1Q15751 4861 aa9.4□□□□□ -0.9
HMGA1-205ENST00000447654 LRP2P98164 4655 aa9.39□□□□□ -0.91
HMGA1-205ENST00000447654 SEC61BP60468 96 aaKnown RBP9.39□□□□□ -0.91
HMGA1-205ENST00000447654 J3QL48 77 aa9.31□□□□□ -0.92
HMGA1-205ENST00000447654 PP632Q6XCG6 107 aa9.21□□□□□ -0.94
HMGA1-205ENST00000447654 CAMK2N1Q7Z7J9 78 aa9.01□□□□□ -0.97
HMGA1-205ENST00000447654 HMCN2Q8NDA2 5059 aa9.01□□□□□ -0.97
HMGA1-205ENST00000447654 R4GN34 69 aa8.95□□□□□ -0.98
HMGA1-205ENST00000447654 MUC17Q685J3 4493 aa8.94□□□□□ -0.98
HMGA1-205ENST00000447654 UBR4Q5T4S7 5183 aa8.89□□□□□ -0.99
HMGA1-205ENST00000447654 SPRR5A0A1B0GTR4 108 aa8.86□□□□□ -0.99
HMGA1-205ENST00000447654 MUC2Q02817 5179 aa8.84□□□□□ -0.99
HMGA1-205ENST00000447654 PRO2289Q9P1D8 64 aa8.82□□□□□ -1
HMGA1-205ENST00000447654 KRTAP4-1Q9BYQ7 146 aa8.81□□□□□ -1
HMGA1-205ENST00000447654 KRTAP23-1A1A580 65 aa8.76□□□□□ -1.01
HMGA1-205ENST00000447654 KRTAP19-2Q3LHN2 52 aa8.61□□□□□ -1.03
HMGA1-205ENST00000447654 INE1O15225 51 aa8.6□□□□□ -1.03
HMGA1-205ENST00000447654 RNF213Q63HN8 5207 aa8.59□□□□□ -1.03
HMGA1-205ENST00000447654 LORP23490 312 aaPredicted RBP8.51□□□□□ -1.05
HMGA1-205ENST00000447654 FLGP20930 4061 aaPredicted RBP8.48□□□□□ -1.05
HMGA1-205ENST00000447654 TNP1P09430 55 aa8.48□□□□□ -1.05
HMGA1-205ENST00000447654 FAT4Q6V0I7 4981 aa8.43□□□□□ -1.06
HMGA1-205ENST00000447654 KRTAP9-2Q9BYQ4 174 aa8.21□□□□□ -1.09
HMGA1-205ENST00000447654 LCE2CQ5TA81 110 aa8.2□□□□□ -1.1
HMGA1-205ENST00000447654 KRTAP9-6A0A140TA67 174 aa8.08□□□□□ -1.12
HMGA1-205ENST00000447654 LCE2AQ5TA79 106 aaPredicted RBP8.07□□□□□ -1.12
HMGA1-205ENST00000447654 MT1HP80294 61 aa7.95□□□□□ -1.14
HMGA1-205ENST00000447654 M0R2T5 61 aa7.86□□□□□ -1.15
HMGA1-205ENST00000447654 LCE2DQ5TA82 110 aaPredicted RBP7.8□□□□□ -1.16
HMGA1-205ENST00000447654 KRTAP19-1Q8IUB9 90 aa7.8□□□□□ -1.16
HMGA1-205ENST00000447654 LCE3AQ5TA76 89 aa7.79□□□□□ -1.16
HMGA1-205ENST00000447654 MT1FP04733 61 aa7.77□□□□□ -1.17
HMGA1-205ENST00000447654 MT2AP02795 61 aa7.76□□□□□ -1.17
HMGA1-205ENST00000447654 SPRR2GQ9BYE4 73 aa7.76□□□□□ -1.17
HMGA1-205ENST00000447654 KRTAP9-8Q9BYQ0 159 aa7.76□□□□□ -1.17
HMGA1-205ENST00000447654 KRTAP8-1Q8IUC2 63 aa7.75□□□□□ -1.17
HMGA1-205ENST00000447654 CRCT1Q9UGL9 99 aa7.71□□□□□ -1.18
HMGA1-205ENST00000447654 KRTAP10-10P60014 251 aa7.67□□□□□ -1.18
HMGA1-205ENST00000447654 KRTAP10-12P60413 245 aa7.52□□□□□ -1.21
HMGA1-205ENST00000447654 FSIP2Q5CZC0 6907 aa7.48□□□□□ -1.21
HMGA1-205ENST00000447654 KRTAP19-8Q3LI54 63 aa7.46□□□□□ -1.22
HMGA1-205ENST00000447654 KRTAP12-3P60328 96 aa7.44□□□□□ -1.22
HMGA1-205ENST00000447654 MT1BP07438 61 aa7.43□□□□□ -1.22
HMGA1-205ENST00000447654 KRTAP9-3Q9BYQ3 159 aa7.43□□□□□ -1.22
HMGA1-205ENST00000447654 USH2AO75445 5202 aa7.32□□□□□ -1.24
HMGA1-205ENST00000447654 KRTAP10-5P60370 271 aa7.31□□□□□ -1.24
HMGA1-205ENST00000447654 MT1XP80297 61 aa7.3□□□□□ -1.24
HMGA1-205ENST00000447654 KRTAP9-7A8MTY7 169 aa7.22□□□□□ -1.25
HMGA1-205ENST00000447654 LCE2BO14633 110 aa7.22□□□□□ -1.25
HMGA1-205ENST00000447654 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.19□□□□□ -1.26
HMGA1-205ENST00000447654 KRTAP10-7P60409 375 aaPredicted RBP7.09□□□□□ -1.27
HMGA1-205ENST00000447654 LCE3CQ5T5A8 94 aa7.08□□□□□ -1.28
HMGA1-205ENST00000447654 KRTAP2-3P0C7H8 128 aa7.03□□□□□ -1.28
HMGA1-205ENST00000447654 KRTAP2-4Q9BYR9 128 aa7.03□□□□□ -1.28
HMGA1-205ENST00000447654 KRTAP2-1Q9BYU5 128 aa7.03□□□□□ -1.28
HMGA1-205ENST00000447654 SSPOA2VEC9 5147 aa7.01□□□□□ -1.29
HMGA1-205ENST00000447654 KMT2DO14686 5537 aa7.01□□□□□ -1.29
HMGA1-205ENST00000447654 FCGBPQ9Y6R7 5405 aaPredicted RBP6.92□□□□□ -1.3
HMGA1-205ENST00000447654 KRTAP9-6A8MVA2 160 aa6.78□□□□□ -1.32
HMGA1-205ENST00000447654 KRTAP19-5Q3LI72 72 aa6.78□□□□□ -1.32
HMGA1-205ENST00000447654 KRTAP4-8A0A0G2JLE6 195 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 269.2 ms