RNA–Protein interactions for RNA: ENST00000447025.6

MCF2L2-203, Transcript of MCF.2 cell line derived transforming sequence-like 2, humanhuman

TSL 1 (best) BASIC

Gene MCF2L2, Length 2,394 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L2-203ENST00000447025 KRTAP12-2P59991 146 aa4.35□□□□□ -1.71
MCF2L2-203ENST00000447025 DNAH2Q9P225 4427 aa4.35□□□□□ -1.71
MCF2L2-203ENST00000447025 APLNQ9ULZ1 77 aa4.35□□□□□ -1.71
MCF2L2-203ENST00000447025 SPINK6Q6UWN8 80 aa4.33□□□□□ -1.72
MCF2L2-203ENST00000447025 A0A0D9SG42 100 aa4.33□□□□□ -1.72
MCF2L2-203ENST00000447025 KRTAP13-4Q3LI77 160 aa4.31□□□□□ -1.72
MCF2L2-203ENST00000447025 SACSQ9NZJ4 4579 aa4.31□□□□□ -1.72
MCF2L2-203ENST00000447025 KRTAP13-1Q8IUC0 172 aa4.29□□□□□ -1.72
MCF2L2-203ENST00000447025 DNAH6Q9C0G6 4158 aa4.28□□□□□ -1.72
MCF2L2-203ENST00000447025 PKHD1P08F94 4074 aa4.27□□□□□ -1.73
MCF2L2-203ENST00000447025 LINC01556Q5JQF7 62 aa4.27□□□□□ -1.73
MCF2L2-203ENST00000447025 KRTAP10-6P60371 365 aaPredicted RBP4.26□□□□□ -1.73
MCF2L2-203ENST00000447025 KRTAP1-5Q9BYS1 174 aa4.25□□□□□ -1.73
MCF2L2-203ENST00000447025 HECTD4Q9Y4D8 3996 aa4.23□□□□□ -1.73
MCF2L2-203ENST00000447025 H3BNG1 76 aa4.23□□□□□ -1.73
MCF2L2-203ENST00000447025 FAT2Q9NYQ8 4349 aa4.23□□□□□ -1.73
MCF2L2-203ENST00000447025 SPRR5A0A1B0GTR4 108 aa4.21□□□□□ -1.74
MCF2L2-203ENST00000447025 KRTAP12-1P59990 96 aa4.2□□□□□ -1.74
MCF2L2-203ENST00000447025 DNAH11Q96DT5 4516 aa4.2□□□□□ -1.74
MCF2L2-203ENST00000447025 DNAH17Q9UFH2 4485 aa4.19□□□□□ -1.74
MCF2L2-203ENST00000447025 DNAH5Q8TE73 4624 aa4.19□□□□□ -1.74
MCF2L2-203ENST00000447025 PP632Q6XCG6 107 aa4.16□□□□□ -1.74
MCF2L2-203ENST00000447025 PKD1P98161 4303 aa4.15□□□□□ -1.74
MCF2L2-203ENST00000447025 RYR1P21817 5038 aa4.14□□□□□ -1.75
MCF2L2-203ENST00000447025 DMBT1Q9UGM3 2413 aaPredicted RBP4.14□□□□□ -1.75
MCF2L2-203ENST00000447025 DNAH8Q96JB1 4490 aa4.12□□□□□ -1.75
MCF2L2-203ENST00000447025 LRP1BQ9NZR2 4599 aa4.12□□□□□ -1.75
MCF2L2-203ENST00000447025 FAT1Q14517 4588 aa4.09□□□□□ -1.75
MCF2L2-203ENST00000447025 DYNC1H1Q14204 4646 aaKnown RBP4.08□□□□□ -1.76
MCF2L2-203ENST00000447025 VPS13BQ7Z7G8 4022 aa4.06□□□□□ -1.76
MCF2L2-203ENST00000447025 KRTAP9-6A0A140TA67 174 aa4.05□□□□□ -1.76
MCF2L2-203ENST00000447025 KRTAP10-2P60368 255 aa4.04□□□□□ -1.76
MCF2L2-203ENST00000447025 KIAA1109Q2LD37 5005 aa4.04□□□□□ -1.76
MCF2L2-203ENST00000447025 APOBP04114 4563 aaKnown RBP4.03□□□□□ -1.76
MCF2L2-203ENST00000447025 A0A1B0GVY2 172 aa4□□□□□ -1.77
MCF2L2-203ENST00000447025 KRTAP4-5Q9BYR2 181 aa4□□□□□ -1.77
MCF2L2-203ENST00000447025 ABCA13Q86UQ4 5058 aa3.98□□□□□ -1.77
MCF2L2-203ENST00000447025 UBR4Q5T4S7 5183 aa3.98□□□□□ -1.77
MCF2L2-203ENST00000447025 HSPG2P98160 4391 aa3.98□□□□□ -1.77
MCF2L2-203ENST00000447025 MYCBP2O75592 4640 aa3.97□□□□□ -1.77
MCF2L2-203ENST00000447025 M0QZ58 72 aa3.96□□□□□ -1.78
MCF2L2-203ENST00000447025 KRTAP10-1P60331 282 aa3.96□□□□□ -1.78
MCF2L2-203ENST00000447025 KRTAP9-2Q9BYQ4 174 aa3.94□□□□□ -1.78
MCF2L2-203ENST00000447025 LRP1Q07954 4544 aaKnown RBP3.94□□□□□ -1.78
MCF2L2-203ENST00000447025 Q5VSD8 79 aa3.91□□□□□ -1.78
MCF2L2-203ENST00000447025 KRTAP19-4Q3LI73 84 aa3.89□□□□□ -1.79
MCF2L2-203ENST00000447025 SMR3BP02814 79 aaPredicted RBP3.89□□□□□ -1.79
MCF2L2-203ENST00000447025 PKHD1L1Q86WI1 4243 aa3.85□□□□□ -1.79
MCF2L2-203ENST00000447025 KRTAP13-2Q52LG2 175 aa3.84□□□□□ -1.79
MCF2L2-203ENST00000447025 HERC1Q15751 4861 aa3.83□□□□□ -1.8
MCF2L2-203ENST00000447025 FAT3Q8TDW7 4589 aa3.81□□□□□ -1.8
MCF2L2-203ENST00000447025 TNXBP22105 4242 aa3.78□□□□□ -1.8
MCF2L2-203ENST00000447025 KRTAP10-4P60372 401 aaPredicted RBP3.77□□□□□ -1.81
MCF2L2-203ENST00000447025 KRTAP1-4P0C5Y4 121 aa3.73□□□□□ -1.81
MCF2L2-203ENST00000447025 HMCN2Q8NDA2 5059 aa3.7□□□□□ -1.82
MCF2L2-203ENST00000447025 LPAP08519 4548 aa3.67□□□□□ -1.82
MCF2L2-203ENST00000447025 CRCT1Q9UGL9 99 aa3.67□□□□□ -1.82
MCF2L2-203ENST00000447025 LRP2P98164 4655 aa3.65□□□□□ -1.83
MCF2L2-203ENST00000447025 RPS29P62273 56 aaKnown RBP3.65□□□□□ -1.83
MCF2L2-203ENST00000447025 KRTAP10-10P60014 251 aa3.64□□□□□ -1.83
MCF2L2-203ENST00000447025 MUC2Q02817 5179 aa3.62□□□□□ -1.83
MCF2L2-203ENST00000447025 MT1HL1P0DM35 61 aa3.6□□□□□ -1.83
MCF2L2-203ENST00000447025 FAT4Q6V0I7 4981 aa3.59□□□□□ -1.83
MCF2L2-203ENST00000447025 C9orf92A6NGG3 77 aa3.58□□□□□ -1.84
MCF2L2-203ENST00000447025 RNF213Q63HN8 5207 aa3.57□□□□□ -1.84
MCF2L2-203ENST00000447025 LCE5AQ5TCM9 118 aa3.56□□□□□ -1.84
MCF2L2-203ENST00000447025 KRTAP2-2Q9BYT5 123 aa3.56□□□□□ -1.84
MCF2L2-203ENST00000447025 KRTAP9-7A8MTY7 169 aa3.55□□□□□ -1.84
MCF2L2-203ENST00000447025 TNP1P09430 55 aa3.53□□□□□ -1.84
MCF2L2-203ENST00000447025 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.43□□□□□ -1.86
MCF2L2-203ENST00000447025 KRTAP9-4Q9BYQ2 154 aa3.37□□□□□ -1.87
MCF2L2-203ENST00000447025 MUC17Q685J3 4493 aa3.34□□□□□ -1.87
MCF2L2-203ENST00000447025 KRTAP4-1Q9BYQ7 146 aa3.31□□□□□ -1.88
MCF2L2-203ENST00000447025 KRTAP19-1Q8IUB9 90 aa3.28□□□□□ -1.88
MCF2L2-203ENST00000447025 LCE4AQ5TA78 99 aa3.27□□□□□ -1.89
MCF2L2-203ENST00000447025 KRTAP10-12P60413 245 aa3.26□□□□□ -1.89
MCF2L2-203ENST00000447025 LCE1FQ5T754 118 aa3.26□□□□□ -1.89
MCF2L2-203ENST00000447025 SSPOA2VEC9 5147 aa3.25□□□□□ -1.89
MCF2L2-203ENST00000447025 LCE1AQ5T7P2 110 aa3.25□□□□□ -1.89
MCF2L2-203ENST00000447025 KRTAP6-3Q3LI67 103 aa3.24□□□□□ -1.89
MCF2L2-203ENST00000447025 KRTAP9-9Q9BYP9 154 aa3.24□□□□□ -1.89
MCF2L2-203ENST00000447025 FLGP20930 4061 aaPredicted RBP3.2□□□□□ -1.9
MCF2L2-203ENST00000447025 KRTAP9-3Q9BYQ3 159 aa3.18□□□□□ -1.9
MCF2L2-203ENST00000447025 KRTAP8-1Q8IUC2 63 aa3.18□□□□□ -1.9
MCF2L2-203ENST00000447025 LCE3AQ5TA76 89 aa3.17□□□□□ -1.9
MCF2L2-203ENST00000447025 KRTAP4-12Q9BQ66 201 aa3.17□□□□□ -1.9
MCF2L2-203ENST00000447025 KRTAP2-3P0C7H8 128 aa3.16□□□□□ -1.9
MCF2L2-203ENST00000447025 KRTAP19-2Q3LHN2 52 aa3.16□□□□□ -1.9
MCF2L2-203ENST00000447025 KRTAP2-4Q9BYR9 128 aa3.16□□□□□ -1.9
MCF2L2-203ENST00000447025 KRTAP2-1Q9BYU5 128 aa3.16□□□□□ -1.9
MCF2L2-203ENST00000447025 LOC100996750A0A140TA64 210 aa3.13□□□□□ -1.91
MCF2L2-203ENST00000447025 KRTAP4-6Q9BYQ5 205 aa3.13□□□□□ -1.91
MCF2L2-203ENST00000447025 LCE1EQ5T753 118 aa3.12□□□□□ -1.91
MCF2L2-203ENST00000447025 KRTAP20-1Q3LI63 56 aa3.11□□□□□ -1.91
MCF2L2-203ENST00000447025 FSIP2Q5CZC0 6907 aa3.09□□□□□ -1.91
MCF2L2-203ENST00000447025 KRTAP12-4P60329 112 aa3.09□□□□□ -1.92
MCF2L2-203ENST00000447025 KRTAP10-5P60370 271 aa3.06□□□□□ -1.92
MCF2L2-203ENST00000447025 KRTAP4-8Q9BYQ9 185 aa3.06□□□□□ -1.92
MCF2L2-203ENST00000447025 USH2AO75445 5202 aa3.05□□□□□ -1.92
MCF2L2-203ENST00000447025 M0R2T5 61 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms