RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 MMP24-AS1A0A0U1RRL7 71 aa3.74□□□□□ -1.81
CD44-211ENST00000442151 C7orf65Q6ZTY9 151 aa3.74□□□□□ -1.81
CD44-211ENST00000442151 SYNE2Q8WXH0 6885 aaKnown RBP3.74□□□□□ -1.81
CD44-211ENST00000442151 ETDBQ3ZM63 59 aa3.74□□□□□ -1.81
CD44-211ENST00000442151 FCGBPQ9Y6R7 5405 aaPredicted RBP3.74□□□□□ -1.81
CD44-211ENST00000442151 CXCL6P80162 114 aa3.72□□□□□ -1.81
CD44-211ENST00000442151 MACF1Q9UPN3 7388 aaKnown RBP3.72□□□□□ -1.81
CD44-211ENST00000442151 IGKV2D-30A0A075B6S6 120 aa3.72□□□□□ -1.81
CD44-211ENST00000442151 IGKV2-30P06310 120 aa3.72□□□□□ -1.81
CD44-211ENST00000442151 CASC2Q6XLA1 102 aa3.72□□□□□ -1.81
CD44-211ENST00000442151 K7EQZ3 153 aa3.71□□□□□ -1.82
CD44-211ENST00000442151 HCG22E2RYF7 251 aa3.7□□□□□ -1.82
CD44-211ENST00000442151 UBL5Q9BZL1 73 aa3.7□□□□□ -1.82
CD44-211ENST00000442151 SCGB1A1P11684 91 aa3.69□□□□□ -1.82
CD44-211ENST00000442151 KRTAP19-6Q3LI70 58 aa3.69□□□□□ -1.82
CD44-211ENST00000442151 FAM240AA0A1B0GVK7 77 aa3.68□□□□□ -1.82
CD44-211ENST00000442151 ACYP1P07311 99 aa3.66□□□□□ -1.82
CD44-211ENST00000442151 TP53AIP1Q9HCN2 124 aa3.65□□□□□ -1.82
CD44-211ENST00000442151 Q5W150 140 aa3.65□□□□□ -1.83
CD44-211ENST00000442151 CSAG1Q6PB30 78 aa3.64□□□□□ -1.83
CD44-211ENST00000442151 FAM236AA0A1B0GUQ0 79 aa3.63□□□□□ -1.83
CD44-211ENST00000442151 FAM236BA0A1B0GV22 79 aa3.63□□□□□ -1.83
CD44-211ENST00000442151 C4orf26Q17RF5 130 aa3.63□□□□□ -1.83
CD44-211ENST00000442151 PRAC1Q96KF2 57 aa3.63□□□□□ -1.83
CD44-211ENST00000442151 S4R3F8 94 aa3.62□□□□□ -1.83
CD44-211ENST00000442151 Q8N9L7 120 aa3.61□□□□□ -1.83
CD44-211ENST00000442151 C1orf64Q8NEQ6 169 aa3.6□□□□□ -1.83
CD44-211ENST00000442151 C5orf47Q569G3 176 aa3.59□□□□□ -1.83
CD44-211ENST00000442151 IMUPQ9GZP8 106 aa3.59□□□□□ -1.83
CD44-211ENST00000442151 MT-ATP8P03928 68 aa3.58□□□□□ -1.84
CD44-211ENST00000442151 KRTAP6-3Q3LI67 103 aa3.58□□□□□ -1.84
CD44-211ENST00000442151 LINC00643Q86TS7 51 aa3.58□□□□□ -1.84
CD44-211ENST00000442151 Q5VV11 94 aa3.56□□□□□ -1.84
CD44-211ENST00000442151 V9GYY9 64 aa3.56□□□□□ -1.84
CD44-211ENST00000442151 ATP5EP2Q5VTU8 51 aa3.55□□□□□ -1.84
CD44-211ENST00000442151 CRIPTQ9P021 101 aa3.55□□□□□ -1.84
CD44-211ENST00000442151 A6NN06 94 aa3.54□□□□□ -1.84
CD44-211ENST00000442151 LOC101927531A0A1B0GV80 90 aa3.54□□□□□ -1.84
CD44-211ENST00000442151 KLKP1Q107X0 134 aa3.53□□□□□ -1.84
CD44-211ENST00000442151 LCA10Q71F78 164 aa3.53□□□□□ -1.84
CD44-211ENST00000442151 OCR1Q9BZK8 76 aa3.52□□□□□ -1.85
CD44-211ENST00000442151 ANAPC13Q9BS18 74 aa3.51□□□□□ -1.85
CD44-211ENST00000442151 SPRR2GQ9BYE4 73 aa3.51□□□□□ -1.85
CD44-211ENST00000442151 CYP4F30PQ9H0H9 118 aa3.51□□□□□ -1.85
CD44-211ENST00000442151 TRAV22A0A0B4J277 110 aa3.51□□□□□ -1.85
CD44-211ENST00000442151 ATOX1O00244 68 aa3.51□□□□□ -1.85
CD44-211ENST00000442151 KRTAP19-8Q3LI54 63 aa3.5□□□□□ -1.85
CD44-211ENST00000442151 UQCRQO14949 82 aa3.49□□□□□ -1.85
CD44-211ENST00000442151 NDUFC1O43677 76 aa3.49□□□□□ -1.85
CD44-211ENST00000442151 HIST1H4AP62805 103 aaKnown RBP3.48□□□□□ -1.85
CD44-211ENST00000442151 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
CD44-211ENST00000442151 MUC12Q9UKN1 5478 aa3.47□□□□□ -1.85
CD44-211ENST00000442151 NEBP20929 6669 aa3.47□□□□□ -1.85
CD44-211ENST00000442151 A8MUN3 132 aa3.47□□□□□ -1.85
CD44-211ENST00000442151 H0YAA0 97 aa3.45□□□□□ -1.86
CD44-211ENST00000442151 MT1BP07438 61 aa3.45□□□□□ -1.86
CD44-211ENST00000442151 KRTAP10-5P60370 271 aa3.44□□□□□ -1.86
CD44-211ENST00000442151 KRTAP5-2Q701N4 177 aa3.44□□□□□ -1.86
CD44-211ENST00000442151 H0Y9P7 68 aa3.44□□□□□ -1.86
CD44-211ENST00000442151 SMIM20Q8N5G0 67 aa3.44□□□□□ -1.86
CD44-211ENST00000442151 KRTAP4-3Q9BYR4 195 aa3.44□□□□□ -1.86
CD44-211ENST00000442151 COX7CP15954 63 aa3.42□□□□□ -1.86
CD44-211ENST00000442151 MP68P56378 58 aa3.42□□□□□ -1.86
CD44-211ENST00000442151 SERP2Q8N6R1 65 aa3.42□□□□□ -1.86
CD44-211ENST00000442151 C20orf197Q8N268 126 aa3.41□□□□□ -1.86
CD44-211ENST00000442151 PRO2289Q9P1D8 64 aa3.41□□□□□ -1.86
CD44-211ENST00000442151 A0A087WVE0 104 aa3.4□□□□□ -1.87
CD44-211ENST00000442151 CCDC179H3BU77 68 aa3.4□□□□□ -1.87
CD44-211ENST00000442151 PLAC4Q8WY50 150 aa3.39□□□□□ -1.87
CD44-211ENST00000442151 LINC00208Q96KT6 92 aa3.38□□□□□ -1.87
CD44-211ENST00000442151 TRAV7A0A075B6U4 112 aa3.37□□□□□ -1.87
CD44-211ENST00000442151 H3BPC8 53 aa3.37□□□□□ -1.87
CD44-211ENST00000442151 ADM2Q7Z4H4 148 aa3.37□□□□□ -1.87
CD44-211ENST00000442151 KRTAP9-6A8MVA2 160 aa3.36□□□□□ -1.87
CD44-211ENST00000442151 TMEM258P61165 79 aa3.35□□□□□ -1.87
CD44-211ENST00000442151 KRTAP20-1Q3LI63 56 aa3.35□□□□□ -1.87
CD44-211ENST00000442151 R4GN34 69 aa3.34□□□□□ -1.87
CD44-211ENST00000442151 MDN1Q9NU22 5596 aa3.32□□□□□ -1.88
CD44-211ENST00000442151 ATP5EP56381 51 aaPredicted RBP3.3□□□□□ -1.88
CD44-211ENST00000442151 RPS28P62857 69 aaKnown RBP3.3□□□□□ -1.88
CD44-211ENST00000442151 SPTSSBQ8NFR3 76 aa3.3□□□□□ -1.88
CD44-211ENST00000442151 KMT2DO14686 5537 aa3.29□□□□□ -1.88
CD44-211ENST00000442151 H7BZZ5 65 aa3.28□□□□□ -1.88
CD44-211ENST00000442151 M0QZ58 72 aa3.27□□□□□ -1.89
CD44-211ENST00000442151 KRTAP2-3P0C7H8 128 aa3.27□□□□□ -1.89
CD44-211ENST00000442151 DMAC1Q96GE9 116 aa3.27□□□□□ -1.89
CD44-211ENST00000442151 KRTAP2-4Q9BYR9 128 aa3.27□□□□□ -1.89
CD44-211ENST00000442151 ACYP2P14621 99 aa3.26□□□□□ -1.89
CD44-211ENST00000442151 CYSTM1Q9H1C7 97 aa3.26□□□□□ -1.89
CD44-211ENST00000442151 SMIM26A0A096LP01 95 aa3.24□□□□□ -1.89
CD44-211ENST00000442151 KRTAP12-2P59991 146 aa3.24□□□□□ -1.89
CD44-211ENST00000442151 KRTAP8-1Q8IUC2 63 aa3.24□□□□□ -1.89
CD44-211ENST00000442151 SPRR2FQ96RM1 72 aa3.24□□□□□ -1.89
CD44-211ENST00000442151 SNURFQ9Y675 71 aa3.23□□□□□ -1.89
CD44-211ENST00000442151 NDUFAF8A1L188 74 aa3.23□□□□□ -1.89
CD44-211ENST00000442151 SERP1Q9Y6X1 66 aa3.23□□□□□ -1.89
CD44-211ENST00000442151 PSPHP1O15172 72 aa3.22□□□□□ -1.89
CD44-211ENST00000442151 SPRR2EP22531 72 aa3.22□□□□□ -1.89
CD44-211ENST00000442151 SPRR2BP35325 72 aa3.22□□□□□ -1.89
CD44-211ENST00000442151 SPRR2AP35326 72 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms