RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 KRTAP13-1Q8IUC0 172 aa5.47□□□□□ -1.53
SYNE2-206ENST00000441438 HECTD4Q9Y4D8 3996 aa5.47□□□□□ -1.53
SYNE2-206ENST00000441438 DYNC1H1Q14204 4646 aaKnown RBP5.47□□□□□ -1.53
SYNE2-206ENST00000441438 KRTAP13-3Q3SY46 172 aa5.45□□□□□ -1.54
SYNE2-206ENST00000441438 HERC2O95714 4834 aa5.44□□□□□ -1.54
SYNE2-206ENST00000441438 DNAH11Q96DT5 4516 aa5.43□□□□□ -1.54
SYNE2-206ENST00000441438 Q6ZSA8 131 aa5.41□□□□□ -1.54
SYNE2-206ENST00000441438 SPINK6Q6UWN8 80 aa5.41□□□□□ -1.54
SYNE2-206ENST00000441438 VPS13BQ7Z7G8 4022 aa5.4□□□□□ -1.55
SYNE2-206ENST00000441438 PKD1P98161 4303 aa5.37□□□□□ -1.55
SYNE2-206ENST00000441438 C10orf95Q9H7T3 257 aa5.37□□□□□ -1.55
SYNE2-206ENST00000441438 KRTAP17-1Q9BYP8 105 aa5.35□□□□□ -1.55
SYNE2-206ENST00000441438 IGKV2D-30A0A075B6S6 120 aa5.34□□□□□ -1.55
SYNE2-206ENST00000441438 PKHD1P08F94 4074 aa5.31□□□□□ -1.56
SYNE2-206ENST00000441438 DNAH5Q8TE73 4624 aa5.31□□□□□ -1.56
SYNE2-206ENST00000441438 XP32Q5T750 250 aa5.3□□□□□ -1.56
SYNE2-206ENST00000441438 LRP1BQ9NZR2 4599 aa5.29□□□□□ -1.56
SYNE2-206ENST00000441438 KIAA1109Q2LD37 5005 aa5.29□□□□□ -1.56
SYNE2-206ENST00000441438 KRTAP10-2P60368 255 aa5.29□□□□□ -1.56
SYNE2-206ENST00000441438 RYR1P21817 5038 aa5.29□□□□□ -1.56
SYNE2-206ENST00000441438 KRTAP12-2P59991 146 aa5.28□□□□□ -1.56
SYNE2-206ENST00000441438 HSPG2P98160 4391 aa5.26□□□□□ -1.57
SYNE2-206ENST00000441438 APOBP04114 4563 aaKnown RBP5.23□□□□□ -1.57
SYNE2-206ENST00000441438 KRTAP4-5Q9BYR2 181 aa5.22□□□□□ -1.57
SYNE2-206ENST00000441438 KRTAP10-1P60331 282 aa5.2□□□□□ -1.58
SYNE2-206ENST00000441438 PCLOQ9Y6V0 5065 aa5.2□□□□□ -1.58
SYNE2-206ENST00000441438 COX6B2Q6YFQ2 88 aa5.19□□□□□ -1.58
SYNE2-206ENST00000441438 KRTAP13-2Q52LG2 175 aa5.18□□□□□ -1.58
SYNE2-206ENST00000441438 Q5VSD8 79 aa5.17□□□□□ -1.58
SYNE2-206ENST00000441438 KRTAP10-4P60372 401 aaPredicted RBP5.17□□□□□ -1.58
SYNE2-206ENST00000441438 PP632Q6XCG6 107 aa5.17□□□□□ -1.58
SYNE2-206ENST00000441438 RPL37P61927 97 aaKnown RBP5.16□□□□□ -1.58
SYNE2-206ENST00000441438 FAT1Q14517 4588 aa5.16□□□□□ -1.58
SYNE2-206ENST00000441438 SMR3BP02814 79 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-206ENST00000441438 ABCA13Q86UQ4 5058 aa5.14□□□□□ -1.59
SYNE2-206ENST00000441438 H1FX-AS1Q4G0G2 97 aa5.14□□□□□ -1.59
SYNE2-206ENST00000441438 DMBT1Q9UGM3 2413 aaPredicted RBP5.1□□□□□ -1.59
SYNE2-206ENST00000441438 RPS29P62273 56 aaKnown RBP5.08□□□□□ -1.6
SYNE2-206ENST00000441438 KRTAP1-4P0C5Y4 121 aa5.03□□□□□ -1.6
SYNE2-206ENST00000441438 FAT3Q8TDW7 4589 aa5.03□□□□□ -1.6
SYNE2-206ENST00000441438 SPINK1P00995 79 aa5.03□□□□□ -1.6
SYNE2-206ENST00000441438 C9orf92A6NGG3 77 aa5.02□□□□□ -1.61
SYNE2-206ENST00000441438 MYCBP2O75592 4640 aa5□□□□□ -1.61
SYNE2-206ENST00000441438 LRP1Q07954 4544 aaKnown RBP4.98□□□□□ -1.61
SYNE2-206ENST00000441438 LCE5AQ5TCM9 118 aa4.95□□□□□ -1.62
SYNE2-206ENST00000441438 TNXBP22105 4242 aa4.92□□□□□ -1.62
SYNE2-206ENST00000441438 KRTAP2-2Q9BYT5 123 aa4.91□□□□□ -1.62
SYNE2-206ENST00000441438 MT1HL1P0DM35 61 aa4.9□□□□□ -1.62
SYNE2-206ENST00000441438 HERC1Q15751 4861 aa4.89□□□□□ -1.63
SYNE2-206ENST00000441438 MUC17Q685J3 4493 aa4.84□□□□□ -1.63
SYNE2-206ENST00000441438 SPRR5A0A1B0GTR4 108 aa4.84□□□□□ -1.63
SYNE2-206ENST00000441438 HMCN2Q8NDA2 5059 aa4.81□□□□□ -1.64
SYNE2-206ENST00000441438 KRTAP13-4Q3LI77 160 aa4.81□□□□□ -1.64
SYNE2-206ENST00000441438 KRTAP10-6P60371 365 aaPredicted RBP4.74□□□□□ -1.65
SYNE2-206ENST00000441438 KRTAP19-4Q3LI73 84 aa4.74□□□□□ -1.65
SYNE2-206ENST00000441438 LPAP08519 4548 aa4.73□□□□□ -1.65
SYNE2-206ENST00000441438 S4R3F8 94 aa4.72□□□□□ -1.65
SYNE2-206ENST00000441438 LRP2P98164 4655 aa4.69□□□□□ -1.66
SYNE2-206ENST00000441438 A0A0D9SG42 100 aa4.64□□□□□ -1.67
SYNE2-206ENST00000441438 KRTAP9-4Q9BYQ2 154 aa4.64□□□□□ -1.67
SYNE2-206ENST00000441438 UBR4Q5T4S7 5183 aa4.58□□□□□ -1.68
SYNE2-206ENST00000441438 KRTAP12-1P59990 96 aa4.55□□□□□ -1.68
SYNE2-206ENST00000441438 LCE1FQ5T754 118 aa4.55□□□□□ -1.68
SYNE2-206ENST00000441438 MUC2Q02817 5179 aa4.53□□□□□ -1.68
SYNE2-206ENST00000441438 RNF213Q63HN8 5207 aa4.51□□□□□ -1.69
SYNE2-206ENST00000441438 M0QZ58 72 aa4.5□□□□□ -1.69
SYNE2-206ENST00000441438 KRTAP9-9Q9BYP9 154 aa4.39□□□□□ -1.71
SYNE2-206ENST00000441438 LCE1AQ5T7P2 110 aa4.34□□□□□ -1.71
SYNE2-206ENST00000441438 KRTAP9-2Q9BYQ4 174 aa4.31□□□□□ -1.72
SYNE2-206ENST00000441438 KRTAP19-2Q3LHN2 52 aa4.29□□□□□ -1.72
SYNE2-206ENST00000441438 FAT4Q6V0I7 4981 aa4.29□□□□□ -1.72
SYNE2-206ENST00000441438 LCE1EQ5T753 118 aa4.28□□□□□ -1.72
SYNE2-206ENST00000441438 KRTAP10-10P60014 251 aa4.27□□□□□ -1.73
SYNE2-206ENST00000441438 KRTAP4-1Q9BYQ7 146 aa4.27□□□□□ -1.73
SYNE2-206ENST00000441438 KRTAP6-3Q3LI67 103 aa4.23□□□□□ -1.73
SYNE2-206ENST00000441438 KRTAP9-6A0A140TA67 174 aa4.22□□□□□ -1.73
SYNE2-206ENST00000441438 KRTAP9-7A8MTY7 169 aa4.22□□□□□ -1.73
SYNE2-206ENST00000441438 MT3P25713 68 aa4.18□□□□□ -1.74
SYNE2-206ENST00000441438 LCE3CQ5T5A8 94 aa4.18□□□□□ -1.74
SYNE2-206ENST00000441438 MT1HP80294 61 aa4.16□□□□□ -1.74
SYNE2-206ENST00000441438 LCE1DQ5T752 114 aa4.11□□□□□ -1.75
SYNE2-206ENST00000441438 LCE4AQ5TA78 99 aa4.1□□□□□ -1.75
SYNE2-206ENST00000441438 CRCT1Q9UGL9 99 aa4.08□□□□□ -1.76
SYNE2-206ENST00000441438 FLGP20930 4061 aaPredicted RBP4.08□□□□□ -1.76
SYNE2-206ENST00000441438 M0R2T5 61 aa4.04□□□□□ -1.76
SYNE2-206ENST00000441438 KRTAP12-4P60329 112 aa4.03□□□□□ -1.76
SYNE2-206ENST00000441438 TNP1P09430 55 aa3.98□□□□□ -1.77
SYNE2-206ENST00000441438 KRTAP9-8Q9BYQ0 159 aa3.94□□□□□ -1.78
SYNE2-206ENST00000441438 KRTAP9-3Q9BYQ3 159 aa3.94□□□□□ -1.78
SYNE2-206ENST00000441438 KRTAP10-7P60409 375 aaPredicted RBP3.9□□□□□ -1.78
SYNE2-206ENST00000441438 KRTAP10-12P60413 245 aa3.89□□□□□ -1.79
SYNE2-206ENST00000441438 LCE3EQ5T5B0 92 aa3.88□□□□□ -1.79
SYNE2-206ENST00000441438 MT2AP02795 61 aa3.86□□□□□ -1.79
SYNE2-206ENST00000441438 KRTAP19-8Q3LI54 63 aa3.86□□□□□ -1.79
SYNE2-206ENST00000441438 SPRR2GQ9BYE4 73 aa3.84□□□□□ -1.8
SYNE2-206ENST00000441438 USH2AO75445 5202 aa3.83□□□□□ -1.8
SYNE2-206ENST00000441438 MT1FP04733 61 aa3.81□□□□□ -1.8
SYNE2-206ENST00000441438 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.8□□□□□ -1.8
SYNE2-206ENST00000441438 KRTAP19-6Q3LI70 58 aa3.8□□□□□ -1.8
SYNE2-206ENST00000441438 KRTAP19-1Q8IUB9 90 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms