RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 KRTAP3-3Q9BYR6 98 aa11.31□□□□□ -0.6
RAPGEF1-206ENST00000438647 A8MUN3 132 aa11.26□□□□□ -0.61
RAPGEF1-206ENST00000438647 KRTAP9-7A8MTY7 169 aa11.2□□□□□ -0.62
RAPGEF1-206ENST00000438647 NDUFC1O43677 76 aa11.2□□□□□ -0.62
RAPGEF1-206ENST00000438647 KLKP1Q107X0 134 aa11.2□□□□□ -0.62
RAPGEF1-206ENST00000438647 SCGB1A1P11684 91 aa11.19□□□□□ -0.62
RAPGEF1-206ENST00000438647 H3BPC8 53 aa11.17□□□□□ -0.62
RAPGEF1-206ENST00000438647 SPRR2GQ9BYE4 73 aa11.16□□□□□ -0.62
RAPGEF1-206ENST00000438647 IMUPQ9GZP8 106 aa11.15□□□□□ -0.62
RAPGEF1-206ENST00000438647 Q5VV11 94 aa11.09□□□□□ -0.63
RAPGEF1-206ENST00000438647 CRIPTQ9P021 101 aa11.09□□□□□ -0.63
RAPGEF1-206ENST00000438647 H0YAA0 97 aa11.07□□□□□ -0.64
RAPGEF1-206ENST00000438647 K7ERU9 68 aa11.07□□□□□ -0.64
RAPGEF1-206ENST00000438647 MACF1Q9UPN3 7388 aaKnown RBP11.07□□□□□ -0.64
RAPGEF1-206ENST00000438647 KRTAP19-8Q3LI54 63 aa11.06□□□□□ -0.64
RAPGEF1-206ENST00000438647 MT1BP07438 61 aa11.02□□□□□ -0.65
RAPGEF1-206ENST00000438647 MT-ATP8P03928 68 aa10.97□□□□□ -0.65
RAPGEF1-206ENST00000438647 DMAC1Q96GE9 116 aa10.94□□□□□ -0.66
RAPGEF1-206ENST00000438647 SMIM20Q8N5G0 67 aa10.93□□□□□ -0.66
RAPGEF1-206ENST00000438647 ADM2Q7Z4H4 148 aa10.92□□□□□ -0.66
RAPGEF1-206ENST00000438647 SYNE2Q8WXH0 6885 aaKnown RBP10.91□□□□□ -0.66
RAPGEF1-206ENST00000438647 A6NN06 94 aa10.91□□□□□ -0.66
RAPGEF1-206ENST00000438647 TRAV7A0A075B6U4 112 aa10.87□□□□□ -0.67
RAPGEF1-206ENST00000438647 KRTAP10-5P60370 271 aa10.77□□□□□ -0.69
RAPGEF1-206ENST00000438647 C20orf197Q8N268 126 aa10.77□□□□□ -0.69
RAPGEF1-206ENST00000438647 ACYP2P14621 99 aa10.73□□□□□ -0.69
RAPGEF1-206ENST00000438647 KRTAP6-3Q3LI67 103 aa10.7□□□□□ -0.7
RAPGEF1-206ENST00000438647 R4GN34 69 aa10.67□□□□□ -0.7
RAPGEF1-206ENST00000438647 P0C880 135 aa10.65□□□□□ -0.7
RAPGEF1-206ENST00000438647 SPTSSBQ8NFR3 76 aa10.62□□□□□ -0.71
RAPGEF1-206ENST00000438647 SNURFQ9Y675 71 aa10.61□□□□□ -0.71
RAPGEF1-206ENST00000438647 M0QZ58 72 aa10.57□□□□□ -0.72
RAPGEF1-206ENST00000438647 KRTAP3-2Q9BYR7 98 aa10.56□□□□□ -0.72
RAPGEF1-206ENST00000438647 PLAC4Q8WY50 150 aa10.55□□□□□ -0.72
RAPGEF1-206ENST00000438647 CHKB-CPT1BH3BT56 60 aa10.54□□□□□ -0.72
RAPGEF1-206ENST00000438647 SERP2Q8N6R1 65 aa10.54□□□□□ -0.72
RAPGEF1-206ENST00000438647 SPANXA2-OT1Q8N9U9 137 aa10.5□□□□□ -0.73
RAPGEF1-206ENST00000438647 PRO2289Q9P1D8 64 aa10.5□□□□□ -0.73
RAPGEF1-206ENST00000438647 LINC01554Q52M75 96 aa10.4□□□□□ -0.74
RAPGEF1-206ENST00000438647 MT1XP80297 61 aa10.38□□□□□ -0.75
RAPGEF1-206ENST00000438647 MUC12Q9UKN1 5478 aa10.34□□□□□ -0.75
RAPGEF1-206ENST00000438647 KRTAP5-9P26371 169 aa10.26□□□□□ -0.77
RAPGEF1-206ENST00000438647 NEBP20929 6669 aa10.24□□□□□ -0.77
RAPGEF1-206ENST00000438647 COX7CP15954 63 aa10.24□□□□□ -0.77
RAPGEF1-206ENST00000438647 KMT2DO14686 5537 aa10.19□□□□□ -0.78
RAPGEF1-206ENST00000438647 COA5Q86WW8 74 aa10.17□□□□□ -0.78
RAPGEF1-206ENST00000438647 KRTAP12-2P59991 146 aa10.15□□□□□ -0.78
RAPGEF1-206ENST00000438647 MDN1Q9NU22 5596 aa10.09□□□□□ -0.79
RAPGEF1-206ENST00000438647 H7BZZ5 65 aa10.06□□□□□ -0.8
RAPGEF1-206ENST00000438647 SEC61GP60059 68 aa10.03□□□□□ -0.8
RAPGEF1-206ENST00000438647 KRTAP8-1Q8IUC2 63 aa10.02□□□□□ -0.81
RAPGEF1-206ENST00000438647 SPRR2FQ96RM1 72 aa10□□□□□ -0.81
RAPGEF1-206ENST00000438647 KRTAP13-4Q3LI77 160 aa9.99□□□□□ -0.81
RAPGEF1-206ENST00000438647 CYSTM1Q9H1C7 97 aa9.99□□□□□ -0.81
RAPGEF1-206ENST00000438647 SERP1Q9Y6X1 66 aa9.99□□□□□ -0.81
RAPGEF1-206ENST00000438647 ANAPC13Q9BS18 74 aa9.94□□□□□ -0.82
RAPGEF1-206ENST00000438647 KRTAP10-7P60409 375 aaPredicted RBP9.89□□□□□ -0.83
RAPGEF1-206ENST00000438647 KRTAP10-12P60413 245 aa9.87□□□□□ -0.83
RAPGEF1-206ENST00000438647 KRTAP4-8A0A0G2JLE6 195 aa9.86□□□□□ -0.83
RAPGEF1-206ENST00000438647 KRTAP4-8Q9BYQ9 185 aa9.86□□□□□ -0.83
RAPGEF1-206ENST00000438647 KRTAP20-1Q3LI63 56 aa9.85□□□□□ -0.83
RAPGEF1-206ENST00000438647 CAMK2N1Q7Z7J9 78 aa9.84□□□□□ -0.83
RAPGEF1-206ENST00000438647 SPRR2EP22531 72 aa9.82□□□□□ -0.84
RAPGEF1-206ENST00000438647 SPRR2BP35325 72 aa9.82□□□□□ -0.84
RAPGEF1-206ENST00000438647 SPRR2AP35326 72 aa9.82□□□□□ -0.84
RAPGEF1-206ENST00000438647 A0A1B0GU33 70 aa9.79□□□□□ -0.84
RAPGEF1-206ENST00000438647 A0A0D9SG42 100 aa9.74□□□□□ -0.85
RAPGEF1-206ENST00000438647 SPATA8Q6RVD6 105 aa9.72□□□□□ -0.85
RAPGEF1-206ENST00000438647 CCDC179H3BU77 68 aa9.7□□□□□ -0.86
RAPGEF1-206ENST00000438647 A0A1B0GU69 56 aa9.68□□□□□ -0.86
RAPGEF1-206ENST00000438647 LCE1AQ5T7P2 110 aa9.68□□□□□ -0.86
RAPGEF1-206ENST00000438647 ATP5EP56381 51 aaPredicted RBP9.65□□□□□ -0.86
RAPGEF1-206ENST00000438647 KRTAP2-3P0C7H8 128 aa9.63□□□□□ -0.87
RAPGEF1-206ENST00000438647 KRTAP2-4Q9BYR9 128 aa9.63□□□□□ -0.87
RAPGEF1-206ENST00000438647 SPINT4Q6UDR6 99 aa9.61□□□□□ -0.87
RAPGEF1-206ENST00000438647 SMIM26A0A096LP01 95 aa9.54□□□□□ -0.88
RAPGEF1-206ENST00000438647 KRTAP12-1P59990 96 aa9.53□□□□□ -0.88
RAPGEF1-206ENST00000438647 SPRR2DP22532 72 aa9.49□□□□□ -0.89
RAPGEF1-206ENST00000438647 PRR15LQ9BU68 103 aa9.47□□□□□ -0.89
RAPGEF1-206ENST00000438647 TMEM258P61165 79 aa9.41□□□□□ -0.9
RAPGEF1-206ENST00000438647 A8MU10 97 aa9.38□□□□□ -0.91
RAPGEF1-206ENST00000438647 LINC01558Q9Y6Z2 57 aa9.35□□□□□ -0.91
RAPGEF1-206ENST00000438647 KRTAP2-2Q9BYT5 123 aa9.34□□□□□ -0.91
RAPGEF1-206ENST00000438647 KRTAP2-1Q9BYU5 128 aa9.34□□□□□ -0.91
RAPGEF1-206ENST00000438647 KRTAP19-7Q3SYF9 63 aa9.27□□□□□ -0.93
RAPGEF1-206ENST00000438647 LCE3BQ5TA77 95 aa9.22□□□□□ -0.93
RAPGEF1-206ENST00000438647 MT1EP04732 61 aa9.2□□□□□ -0.94
RAPGEF1-206ENST00000438647 UQCR11O14957 56 aa9.14□□□□□ -0.95
RAPGEF1-206ENST00000438647 TNP1P09430 55 aa9.11□□□□□ -0.95
RAPGEF1-206ENST00000438647 LCE5AQ5TCM9 118 aa9.11□□□□□ -0.95
RAPGEF1-206ENST00000438647 KRTAP19-3Q7Z4W3 81 aa9.11□□□□□ -0.95
RAPGEF1-206ENST00000438647 C10orf95Q9H7T3 257 aa9.09□□□□□ -0.95
RAPGEF1-206ENST00000438647 KRTAP19-5Q3LI72 72 aa9.08□□□□□ -0.96
RAPGEF1-206ENST00000438647 LCE3AQ5TA76 89 aa8.94□□□□□ -0.98
RAPGEF1-206ENST00000438647 V9GYY9 64 aa8.93□□□□□ -0.98
RAPGEF1-206ENST00000438647 DSTQ03001 7570 aaKnown RBP8.93□□□□□ -0.98
RAPGEF1-206ENST00000438647 MT1GP13640 62 aa8.92□□□□□ -0.98
RAPGEF1-206ENST00000438647 MIR22HGQ0VDD5 57 aa8.91□□□□□ -0.98
RAPGEF1-206ENST00000438647 PP632Q6XCG6 107 aa8.89□□□□□ -0.99
RAPGEF1-206ENST00000438647 Q1T7F1 81 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms