RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 H0YAA0 97 aa8.32□□□□□ -1.08
SCARF1-203ENST00000434376 A0A1B0GU33 70 aa8.31□□□□□ -1.08
SCARF1-203ENST00000434376 A8MUU9 505 aa8.25□□□□□ -1.09
SCARF1-203ENST00000434376 LRP2P98164 4655 aa8.25□□□□□ -1.09
SCARF1-203ENST00000434376 C20orf166-AS1Q96NR2 134 aa8.24□□□□□ -1.09
SCARF1-203ENST00000434376 KRTAP3-1Q9BYR8 98 aa8.24□□□□□ -1.09
SCARF1-203ENST00000434376 K7ERS5 55 aa8.21□□□□□ -1.1
SCARF1-203ENST00000434376 LPAP08519 4548 aa8.2□□□□□ -1.1
SCARF1-203ENST00000434376 A0A0D9SG42 100 aa8.2□□□□□ -1.1
SCARF1-203ENST00000434376 KRTAP4-5Q9BYR2 181 aa8.2□□□□□ -1.1
SCARF1-203ENST00000434376 KRTAP25-1Q3LHN0 102 aa8.19□□□□□ -1.1
SCARF1-203ENST00000434376 RPS29P62273 56 aaKnown RBP8.19□□□□□ -1.1
SCARF1-203ENST00000434376 H1FX-AS1Q4G0G2 97 aa8.18□□□□□ -1.1
SCARF1-203ENST00000434376 KRTAP10-8P60410 259 aa8.16□□□□□ -1.1
SCARF1-203ENST00000434376 ABCA13Q86UQ4 5058 aa8.14□□□□□ -1.11
SCARF1-203ENST00000434376 XP32Q5T750 250 aa8.13□□□□□ -1.11
SCARF1-203ENST00000434376 TNXBP22105 4242 aa8.12□□□□□ -1.11
SCARF1-203ENST00000434376 ROMO1P60602 79 aa8.09□□□□□ -1.11
SCARF1-203ENST00000434376 COX6B2Q6YFQ2 88 aa8.09□□□□□ -1.11
SCARF1-203ENST00000434376 MT1HL1P0DM35 61 aa8.04□□□□□ -1.12
SCARF1-203ENST00000434376 SPINT4Q6UDR6 99 aa8.04□□□□□ -1.12
SCARF1-203ENST00000434376 RPL37P61927 97 aaKnown RBP8.03□□□□□ -1.12
SCARF1-203ENST00000434376 J3QL48 77 aa8□□□□□ -1.13
SCARF1-203ENST00000434376 MUC2Q02817 5179 aa7.99□□□□□ -1.13
SCARF1-203ENST00000434376 C10orf95Q9H7T3 257 aa7.95□□□□□ -1.14
SCARF1-203ENST00000434376 HERC2O95714 4834 aa7.93□□□□□ -1.14
SCARF1-203ENST00000434376 S4R3F8 94 aa7.93□□□□□ -1.14
SCARF1-203ENST00000434376 P0C880 135 aa7.88□□□□□ -1.15
SCARF1-203ENST00000434376 KRTAP13-4Q3LI77 160 aa7.86□□□□□ -1.15
SCARF1-203ENST00000434376 KRTAP3-3Q9BYR6 98 aa7.82□□□□□ -1.16
SCARF1-203ENST00000434376 TPRXLQ17RH7 258 aa7.8□□□□□ -1.16
SCARF1-203ENST00000434376 HERC1Q15751 4861 aa7.78□□□□□ -1.16
SCARF1-203ENST00000434376 KRTAP10-6P60371 365 aaPredicted RBP7.76□□□□□ -1.17
SCARF1-203ENST00000434376 NDUFAF8A1L188 74 aa7.75□□□□□ -1.17
SCARF1-203ENST00000434376 KRTAP12-2P59991 146 aa7.66□□□□□ -1.18
SCARF1-203ENST00000434376 KRTAP3-2Q9BYR7 98 aa7.65□□□□□ -1.18
SCARF1-203ENST00000434376 RNF213Q63HN8 5207 aa7.62□□□□□ -1.19
SCARF1-203ENST00000434376 KRTAP4-1Q9BYQ7 146 aa7.61□□□□□ -1.19
SCARF1-203ENST00000434376 FAT4Q6V0I7 4981 aa7.6□□□□□ -1.19
SCARF1-203ENST00000434376 M0QZ58 72 aa7.57□□□□□ -1.2
SCARF1-203ENST00000434376 SEC61BP60468 96 aaKnown RBP7.57□□□□□ -1.2
SCARF1-203ENST00000434376 PCLOQ9Y6V0 5065 aa7.56□□□□□ -1.2
SCARF1-203ENST00000434376 R4GN34 69 aa7.53□□□□□ -1.2
SCARF1-203ENST00000434376 KRTAP12-1P59990 96 aa7.49□□□□□ -1.21
SCARF1-203ENST00000434376 LORP23490 312 aaPredicted RBP7.48□□□□□ -1.21
SCARF1-203ENST00000434376 KRTAP15-1Q3LI76 137 aa7.45□□□□□ -1.22
SCARF1-203ENST00000434376 BIRC6Q9NR09 4857 aa7.43□□□□□ -1.22
SCARF1-203ENST00000434376 UBR4Q5T4S7 5183 aa7.41□□□□□ -1.22
SCARF1-203ENST00000434376 MUC17Q685J3 4493 aa7.33□□□□□ -1.24
SCARF1-203ENST00000434376 M0R2T5 61 aa7.32□□□□□ -1.24
SCARF1-203ENST00000434376 CAMK2N1Q7Z7J9 78 aa7.24□□□□□ -1.25
SCARF1-203ENST00000434376 HMCN2Q8NDA2 5059 aa7.21□□□□□ -1.26
SCARF1-203ENST00000434376 A0A0A0MQY5 61 aa7.19□□□□□ -1.26
SCARF1-203ENST00000434376 PLAC4Q8WY50 150 aa7.17□□□□□ -1.26
SCARF1-203ENST00000434376 LUZP6Q538Z0 58 aa7.06□□□□□ -1.28
SCARF1-203ENST00000434376 KRTAP19-2Q3LHN2 52 aa7.05□□□□□ -1.28
SCARF1-203ENST00000434376 FLGP20930 4061 aaPredicted RBP7.03□□□□□ -1.28
SCARF1-203ENST00000434376 KRTAP10-10P60014 251 aa6.92□□□□□ -1.3
SCARF1-203ENST00000434376 LCE2CQ5TA81 110 aa6.84□□□□□ -1.31
SCARF1-203ENST00000434376 USH2AO75445 5202 aa6.79□□□□□ -1.32
SCARF1-203ENST00000434376 FSIP2Q5CZC0 6907 aa6.78□□□□□ -1.32
SCARF1-203ENST00000434376 MT1HP80294 61 aa6.78□□□□□ -1.32
SCARF1-203ENST00000434376 PP632Q6XCG6 107 aa6.74□□□□□ -1.33
SCARF1-203ENST00000434376 MT1FP04733 61 aa6.7□□□□□ -1.34
SCARF1-203ENST00000434376 TNP1P09430 55 aa6.7□□□□□ -1.34
SCARF1-203ENST00000434376 MT2AP02795 61 aa6.65□□□□□ -1.35
SCARF1-203ENST00000434376 KRTAP19-1Q8IUB9 90 aa6.64□□□□□ -1.35
SCARF1-203ENST00000434376 KMT2DO14686 5537 aa6.52□□□□□ -1.37
SCARF1-203ENST00000434376 KRTAP9-8Q9BYQ0 159 aa6.52□□□□□ -1.37
SCARF1-203ENST00000434376 SPRR2GQ9BYE4 73 aa6.47□□□□□ -1.37
SCARF1-203ENST00000434376 LCE3AQ5TA76 89 aa6.42□□□□□ -1.38
SCARF1-203ENST00000434376 MT1BP07438 61 aa6.31□□□□□ -1.4
SCARF1-203ENST00000434376 KRTAP10-7P60409 375 aaPredicted RBP6.24□□□□□ -1.41
SCARF1-203ENST00000434376 MT1XP80297 61 aa6.24□□□□□ -1.41
SCARF1-203ENST00000434376 SPRR5A0A1B0GTR4 108 aa6.22□□□□□ -1.41
SCARF1-203ENST00000434376 KRTAP10-5P60370 271 aa6.22□□□□□ -1.41
SCARF1-203ENST00000434376 KRTAP9-3Q9BYQ3 159 aa6.22□□□□□ -1.41
SCARF1-203ENST00000434376 KRTAP23-1A1A580 65 aa6.17□□□□□ -1.42
SCARF1-203ENST00000434376 LCE2BO14633 110 aa6.17□□□□□ -1.42
SCARF1-203ENST00000434376 KRTAP10-12P60413 245 aa6.17□□□□□ -1.42
SCARF1-203ENST00000434376 KRTAP19-8Q3LI54 63 aa6.15□□□□□ -1.43
SCARF1-203ENST00000434376 KRTAP4-8A0A0G2JLE6 195 aa6.09□□□□□ -1.44
SCARF1-203ENST00000434376 KRTAP4-8Q9BYQ9 185 aa6.09□□□□□ -1.44
SCARF1-203ENST00000434376 KRTAP12-3P60328 96 aa6.06□□□□□ -1.44
SCARF1-203ENST00000434376 PRO2289Q9P1D8 64 aa6.04□□□□□ -1.44
SCARF1-203ENST00000434376 DSTQ03001 7570 aaKnown RBP5.96□□□□□ -1.46
SCARF1-203ENST00000434376 LCE2AQ5TA79 106 aaPredicted RBP5.94□□□□□ -1.46
SCARF1-203ENST00000434376 SSPOA2VEC9 5147 aa5.93□□□□□ -1.46
SCARF1-203ENST00000434376 KRTAP19-5Q3LI72 72 aa5.92□□□□□ -1.46
SCARF1-203ENST00000434376 KRTAP8-1Q8IUC2 63 aa5.91□□□□□ -1.46
SCARF1-203ENST00000434376 INE1O15225 51 aa5.84□□□□□ -1.47
SCARF1-203ENST00000434376 MUC12Q9UKN1 5478 aa5.83□□□□□ -1.48
SCARF1-203ENST00000434376 KRTAP4-7Q9BYR0 210 aa5.81□□□□□ -1.48
SCARF1-203ENST00000434376 FCGBPQ9Y6R7 5405 aaPredicted RBP5.74□□□□□ -1.49
SCARF1-203ENST00000434376 OBSCNQ5VST9 7968 aa5.7□□□□□ -1.5
SCARF1-203ENST00000434376 SYNE1Q8NF91 8797 aaKnown RBP5.64□□□□□ -1.51
SCARF1-203ENST00000434376 CRCT1Q9UGL9 99 aa5.63□□□□□ -1.51
SCARF1-203ENST00000434376 LCE3CQ5T5A8 94 aa5.58□□□□□ -1.52
SCARF1-203ENST00000434376 KRTAP19-7Q3SYF9 63 aa5.54□□□□□ -1.52
SCARF1-203ENST00000434376 SYNE2Q8WXH0 6885 aaKnown RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms