RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 KRTAP10-8P60410 259 aa6.17□□□□□ -1.42
CD44-209ENST00000433892 H1FX-AS1Q4G0G2 97 aa6.17□□□□□ -1.42
CD44-209ENST00000433892 Q5VSD8 79 aa6.15□□□□□ -1.43
CD44-209ENST00000433892 RYR3Q15413 4870 aa6.15□□□□□ -1.43
CD44-209ENST00000433892 CSAG1Q6PB30 78 aa6.12□□□□□ -1.43
CD44-209ENST00000433892 RYR1P21817 5038 aa6.11□□□□□ -1.43
CD44-209ENST00000433892 RPL37P61927 97 aaKnown RBP6.1□□□□□ -1.43
CD44-209ENST00000433892 XP32Q5T750 250 aa6.09□□□□□ -1.44
CD44-209ENST00000433892 LINC01554Q52M75 96 aa6.08□□□□□ -1.44
CD44-209ENST00000433892 KRTAP17-1Q9BYP8 105 aa6.06□□□□□ -1.44
CD44-209ENST00000433892 KIAA1109Q2LD37 5005 aa6.06□□□□□ -1.44
CD44-209ENST00000433892 LPAP08519 4548 aa6.04□□□□□ -1.44
CD44-209ENST00000433892 KRTAP10-6P60371 365 aaPredicted RBP6.01□□□□□ -1.45
CD44-209ENST00000433892 S4R3F8 94 aa6□□□□□ -1.45
CD44-209ENST00000433892 K7ERS5 55 aa5.98□□□□□ -1.45
CD44-209ENST00000433892 LCE2BO14633 110 aa5.98□□□□□ -1.45
CD44-209ENST00000433892 MT1HL1P0DM35 61 aa5.98□□□□□ -1.45
CD44-209ENST00000433892 LRP2P98164 4655 aa5.98□□□□□ -1.45
CD44-209ENST00000433892 KRTAP13-4Q3LI77 160 aa5.97□□□□□ -1.45
CD44-209ENST00000433892 A0A0D9SG42 100 aa5.94□□□□□ -1.46
CD44-209ENST00000433892 KRTAP25-1Q3LHN0 102 aa5.94□□□□□ -1.46
CD44-209ENST00000433892 P0C880 135 aa5.92□□□□□ -1.46
CD44-209ENST00000433892 CRIPTQ9P021 101 aa5.92□□□□□ -1.46
CD44-209ENST00000433892 EPPK1P58107 5090 aaKnown RBP5.92□□□□□ -1.46
CD44-209ENST00000433892 ABCA13Q86UQ4 5058 aa5.89□□□□□ -1.47
CD44-209ENST00000433892 ROMO1P60602 79 aa5.86□□□□□ -1.47
CD44-209ENST00000433892 TPRXLQ17RH7 258 aa5.83□□□□□ -1.48
CD44-209ENST00000433892 J3QL48 77 aa5.78□□□□□ -1.48
CD44-209ENST00000433892 KRTAP12-2P59991 146 aa5.78□□□□□ -1.48
CD44-209ENST00000433892 KRTAP4-5Q9BYR2 181 aa5.74□□□□□ -1.49
CD44-209ENST00000433892 SPINT4Q6UDR6 99 aa5.73□□□□□ -1.49
CD44-209ENST00000433892 KRTAP12-1P59990 96 aa5.72□□□□□ -1.49
CD44-209ENST00000433892 MUC17Q685J3 4493 aa5.7□□□□□ -1.5
CD44-209ENST00000433892 C10orf95Q9H7T3 257 aa5.69□□□□□ -1.5
CD44-209ENST00000433892 M0QZ58 72 aa5.68□□□□□ -1.5
CD44-209ENST00000433892 SEC61BP60468 96 aaKnown RBP5.62□□□□□ -1.51
CD44-209ENST00000433892 LCE2AQ5TA79 106 aaPredicted RBP5.62□□□□□ -1.51
CD44-209ENST00000433892 HERC2O95714 4834 aa5.6□□□□□ -1.51
CD44-209ENST00000433892 KRTAP4-1Q9BYQ7 146 aa5.59□□□□□ -1.51
CD44-209ENST00000433892 R4GN34 69 aa5.58□□□□□ -1.52
CD44-209ENST00000433892 H3BS24 57 aa5.57□□□□□ -1.52
CD44-209ENST00000433892 MUC2Q02817 5179 aa5.57□□□□□ -1.52
CD44-209ENST00000433892 LCE2CQ5TA81 110 aa5.56□□□□□ -1.52
CD44-209ENST00000433892 LORP23490 312 aaPredicted RBP5.54□□□□□ -1.52
CD44-209ENST00000433892 KRTAP19-2Q3LHN2 52 aa5.46□□□□□ -1.53
CD44-209ENST00000433892 KRTAP15-1Q3LI76 137 aa5.43□□□□□ -1.54
CD44-209ENST00000433892 FLGP20930 4061 aaPredicted RBP5.41□□□□□ -1.54
CD44-209ENST00000433892 BIRC6Q9NR09 4857 aa5.4□□□□□ -1.55
CD44-209ENST00000433892 HERC1Q15751 4861 aa5.39□□□□□ -1.55
CD44-209ENST00000433892 PCLOQ9Y6V0 5065 aa5.33□□□□□ -1.56
CD44-209ENST00000433892 CAMK2N1Q7Z7J9 78 aa5.31□□□□□ -1.56
CD44-209ENST00000433892 NDUFAF8A1L188 74 aa5.3□□□□□ -1.56
CD44-209ENST00000433892 HMCN2Q8NDA2 5059 aa5.29□□□□□ -1.56
CD44-209ENST00000433892 FAT4Q6V0I7 4981 aa5.27□□□□□ -1.57
CD44-209ENST00000433892 PLAC4Q8WY50 150 aa5.2□□□□□ -1.58
CD44-209ENST00000433892 PP632Q6XCG6 107 aa5.16□□□□□ -1.58
CD44-209ENST00000433892 RNF213Q63HN8 5207 aa5.14□□□□□ -1.59
CD44-209ENST00000433892 UBR4Q5T4S7 5183 aa5.1□□□□□ -1.59
CD44-209ENST00000433892 TNP1P09430 55 aa5.08□□□□□ -1.6
CD44-209ENST00000433892 M0R2T5 61 aa5.05□□□□□ -1.6
CD44-209ENST00000433892 SPRR2GQ9BYE4 73 aa5.04□□□□□ -1.6
CD44-209ENST00000433892 KRTAP19-1Q8IUB9 90 aa5.03□□□□□ -1.6
CD44-209ENST00000433892 MT1HP80294 61 aa5□□□□□ -1.61
CD44-209ENST00000433892 LOC100996750A0A140TA64 210 aa4.99□□□□□ -1.61
CD44-209ENST00000433892 KRTAP4-6Q9BYQ5 205 aa4.99□□□□□ -1.61
CD44-209ENST00000433892 KRTAP23-1A1A580 65 aa4.97□□□□□ -1.61
CD44-209ENST00000433892 LUZP6Q538Z0 58 aa4.95□□□□□ -1.62
CD44-209ENST00000433892 MT1FP04733 61 aa4.94□□□□□ -1.62
CD44-209ENST00000433892 KRTAP10-10P60014 251 aa4.94□□□□□ -1.62
CD44-209ENST00000433892 MT2AP02795 61 aa4.93□□□□□ -1.62
CD44-209ENST00000433892 KRTAP9-8Q9BYQ0 159 aa4.89□□□□□ -1.63
CD44-209ENST00000433892 LCE3AQ5TA76 89 aa4.84□□□□□ -1.64
CD44-209ENST00000433892 SPRR5A0A1B0GTR4 108 aa4.82□□□□□ -1.64
CD44-209ENST00000433892 KRTAP19-8Q3LI54 63 aa4.8□□□□□ -1.64
CD44-209ENST00000433892 MT1BP07438 61 aa4.76□□□□□ -1.65
CD44-209ENST00000433892 KRTAP10-5P60370 271 aa4.74□□□□□ -1.65
CD44-209ENST00000433892 MT1XP80297 61 aa4.73□□□□□ -1.65
CD44-209ENST00000433892 KRTAP8-1Q8IUC2 63 aa4.69□□□□□ -1.66
CD44-209ENST00000433892 KRTAP9-3Q9BYQ3 159 aa4.68□□□□□ -1.66
CD44-209ENST00000433892 A0A0A0MQY5 61 aa4.67□□□□□ -1.66
CD44-209ENST00000433892 KRTAP10-12P60413 245 aa4.64□□□□□ -1.67
CD44-209ENST00000433892 KRTAP10-7P60409 375 aaPredicted RBP4.62□□□□□ -1.67
CD44-209ENST00000433892 KRTAP4-8Q9BYQ9 185 aa4.61□□□□□ -1.67
CD44-209ENST00000433892 KRTAP12-3P60328 96 aa4.6□□□□□ -1.67
CD44-209ENST00000433892 USH2AO75445 5202 aa4.59□□□□□ -1.67
CD44-209ENST00000433892 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.55□□□□□ -1.68
CD44-209ENST00000433892 KRTAP9-2Q9BYQ4 174 aa4.55□□□□□ -1.68
CD44-209ENST00000433892 PRO2289Q9P1D8 64 aa4.54□□□□□ -1.68
CD44-209ENST00000433892 KRTAP9-6A0A140TA67 174 aa4.52□□□□□ -1.69
CD44-209ENST00000433892 KMT2DO14686 5537 aa4.51□□□□□ -1.69
CD44-209ENST00000433892 KRTAP4-12Q9BQ66 201 aa4.44□□□□□ -1.7
CD44-209ENST00000433892 KRTAP19-5Q3LI72 72 aa4.42□□□□□ -1.7
CD44-209ENST00000433892 LCE3BQ5TA77 95 aa4.41□□□□□ -1.7
CD44-209ENST00000433892 KRTAP4-8A0A0G2JLE6 195 aa4.35□□□□□ -1.71
CD44-209ENST00000433892 LCE3CQ5T5A8 94 aa4.33□□□□□ -1.72
CD44-209ENST00000433892 KRTAP9-9Q9BYP9 154 aa4.32□□□□□ -1.72
CD44-209ENST00000433892 KRTAP9-4Q9BYQ2 154 aa4.32□□□□□ -1.72
CD44-209ENST00000433892 INE1O15225 51 aa4.24□□□□□ -1.73
CD44-209ENST00000433892 KRTAP19-7Q3SYF9 63 aa4.22□□□□□ -1.73
CD44-209ENST00000433892 SSPOA2VEC9 5147 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms