RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 MXRA5Q9NR99 2828 aa1.4□□□□□ -2.19
VPS54-204ENST00000416400 ITPR3Q14573 2671 aa1.4□□□□□ -2.19
VPS54-204ENST00000416400 STAB2Q8WWQ8 2551 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 CELSR1Q9NYQ6 3014 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 SVEP1Q4LDE5 3571 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 DMXL1Q9Y485 3027 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 DCHS2Q6V1P9 2916 aa1.39□□□□□ -2.19
VPS54-204ENST00000416400 ASPMQ8IZT6 3477 aa1.38□□□□□ -2.19
VPS54-204ENST00000416400 FLNAP21333 2647 aaKnown RBP1.37□□□□□ -2.19
VPS54-204ENST00000416400 UBR5O95071 2799 aaPredicted RBP1.37□□□□□ -2.19
VPS54-204ENST00000416400 TGP01266 2768 aa1.37□□□□□ -2.19
VPS54-204ENST00000416400 COL12A1Q99715 3063 aa1.37□□□□□ -2.19
VPS54-204ENST00000416400 CFAP46Q8IYW2 2715 aa1.37□□□□□ -2.19
VPS54-204ENST00000416400 NBPF19A0A087WUL8 3843 aa1.37□□□□□ -2.19
VPS54-204ENST00000416400 DNAH1Q9P2D7 4330 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 HECTD1Q9ULT8 2610 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 CELSR2Q9HCU4 2923 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 BOD1L1Q8NFC6 3051 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 NIPBLQ6KC79 2804 aaeCLIP1.36□□□□□ -2.19
VPS54-204ENST00000416400 KRTAP4-1Q9BYQ7 146 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 FBN3Q75N90 2809 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 BSNQ9UPA5 3926 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 HIVEP1P15822 2718 aa1.36□□□□□ -2.19
VPS54-204ENST00000416400 SRRM2Q9UQ35 2752 aaKnown RBP1.36□□□□□ -2.19
VPS54-204ENST00000416400 ATMQ13315 3056 aa1.35□□□□□ -2.19
VPS54-204ENST00000416400 TEP1Q99973 2627 aaKnown RBP1.35□□□□□ -2.19
VPS54-204ENST00000416400 TENM4Q6N022 2769 aa1.35□□□□□ -2.19
VPS54-204ENST00000416400 COL6A5A8TX70 2615 aa1.35□□□□□ -2.19
VPS54-204ENST00000416400 ATRQ13535 2644 aa1.35□□□□□ -2.19
VPS54-204ENST00000416400 NBEAL1Q6ZS30 2694 aa1.34□□□□□ -2.19
VPS54-204ENST00000416400 MAST4O15021 2626 aa1.34□□□□□ -2.19
VPS54-204ENST00000416400 AKAP9Q99996 3911 aa1.34□□□□□ -2.2
VPS54-204ENST00000416400 FBN2P35556 2912 aa1.33□□□□□ -2.2
VPS54-204ENST00000416400 ZANQ9Y493 2812 aa1.33□□□□□ -2.2
VPS54-204ENST00000416400 NSD1Q96L73 2696 aaPredicted RBP1.33□□□□□ -2.2
VPS54-204ENST00000416400 FLNBO75369 2602 aaKnown RBP1.33□□□□□ -2.2
VPS54-204ENST00000416400 OTOGQ6ZRI0 2925 aa1.32□□□□□ -2.2
VPS54-204ENST00000416400 ANK3Q12955 4377 aaKnown RBP1.32□□□□□ -2.2
VPS54-204ENST00000416400 RELNP78509 3460 aa1.32□□□□□ -2.2
VPS54-204ENST00000416400 LAMA5O15230 3695 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 STAB1Q9NY15 2570 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 CRYBG3Q68DQ2 2970 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 NOTCH1P46531 2555 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 TENM3Q9P273 2699 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 ITPR2Q14571 2701 aa1.31□□□□□ -2.2
VPS54-204ENST00000416400 FCGBPQ9Y6R7 5405 aaPredicted RBP1.3□□□□□ -2.2
VPS54-204ENST00000416400 DNAH8Q96JB1 4490 aa1.3□□□□□ -2.2
VPS54-204ENST00000416400 FLNCQ14315 2725 aa1.3□□□□□ -2.2
VPS54-204ENST00000416400 SMR3BP02814 79 aaPredicted RBP1.3□□□□□ -2.2
VPS54-204ENST00000416400 EYSQ5T1H1 3165 aa1.3□□□□□ -2.2
VPS54-204ENST00000416400 IGSF10Q6WRI0 2623 aa1.3□□□□□ -2.2
VPS54-204ENST00000416400 VPS13DQ5THJ4 4388 aa1.29□□□□□ -2.2
VPS54-204ENST00000416400 PDZD2O15018 2839 aa1.29□□□□□ -2.2
VPS54-204ENST00000416400 DNAH10Q8IVF4 4471 aa1.29□□□□□ -2.2
VPS54-204ENST00000416400 MGAM2Q2M2H8 2515 aa1.28□□□□□ -2.2
VPS54-204ENST00000416400 VWFP04275 2813 aa1.28□□□□□ -2.2
VPS54-204ENST00000416400 DNAH11Q96DT5 4516 aa1.27□□□□□ -2.21
VPS54-204ENST00000416400 VPS13CQ709C8 3753 aa1.27□□□□□ -2.21
VPS54-204ENST00000416400 GPR98Q8WXG9 6306 aa1.26□□□□□ -2.21
VPS54-204ENST00000416400 TENM1Q9UKZ4 2725 aa1.26□□□□□ -2.21
VPS54-204ENST00000416400 MEGF8Q7Z7M0 2845 aa1.26□□□□□ -2.21
VPS54-204ENST00000416400 HUWE1Q7Z6Z7 4374 aaKnown RBP1.26□□□□□ -2.21
VPS54-204ENST00000416400 USP24Q9UPU5 2620 aa1.26□□□□□ -2.21
VPS54-204ENST00000416400 DNAH3Q8TD57 4116 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 DNAH9Q9NYC9 4486 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 DNAH2Q9P225 4427 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 KRTAP8-1Q8IUC2 63 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 DNAH17Q9UFH2 4485 aa1.25□□□□□ -2.21
VPS54-204ENST00000416400 PKD1L1Q8TDX9 2849 aa1.24□□□□□ -2.21
VPS54-204ENST00000416400 CUBNO60494 3623 aa1.24□□□□□ -2.21
VPS54-204ENST00000416400 DYNC2H1Q8NCM8 4307 aaKnown RBP1.23□□□□□ -2.21
VPS54-204ENST00000416400 CSMD2Q7Z408 3487 aa1.23□□□□□ -2.21
VPS54-204ENST00000416400 MUC3AQ02505 3323 aa1.23□□□□□ -2.21
VPS54-204ENST00000416400 SACSQ9NZJ4 4579 aa1.22□□□□□ -2.21
VPS54-204ENST00000416400 DNAH6Q9C0G6 4158 aa1.21□□□□□ -2.22
VPS54-204ENST00000416400 TRRAPQ9Y4A5 3859 aa1.21□□□□□ -2.22
VPS54-204ENST00000416400 CMYA5Q8N3K9 4069 aa1.2□□□□□ -2.22
VPS54-204ENST00000416400 COL7A1Q02388 2944 aa1.19□□□□□ -2.22
VPS54-204ENST00000416400 LRP1BQ9NZR2 4599 aa1.19□□□□□ -2.22
VPS54-204ENST00000416400 ANK2Q01484 3957 aa1.19□□□□□ -2.22
VPS54-204ENST00000416400 SPRR2GQ9BYE4 73 aa1.18□□□□□ -2.22
VPS54-204ENST00000416400 M0R2T5 61 aa1.17□□□□□ -2.22
VPS54-204ENST00000416400 FRAS1Q86XX4 4008 aa1.17□□□□□ -2.22
VPS54-204ENST00000416400 LYSTQ99698 3801 aa1.17□□□□□ -2.22
VPS54-204ENST00000416400 ZNF469Q96JG9 3925 aaPredicted RBP1.16□□□□□ -2.22
VPS54-204ENST00000416400 MT1HL1P0DM35 61 aa1.16□□□□□ -2.22
VPS54-204ENST00000416400 APOBP04114 4563 aaKnown RBP1.16□□□□□ -2.22
VPS54-204ENST00000416400 PLECQ15149 4684 aaKnown RBP1.16□□□□□ -2.22
VPS54-204ENST00000416400 PKHD1L1Q86WI1 4243 aa1.16□□□□□ -2.22
VPS54-204ENST00000416400 LRP1Q07954 4544 aaKnown RBP1.15□□□□□ -2.22
VPS54-204ENST00000416400 PRKDCP78527 4128 aaKnown RBP1.14□□□□□ -2.23
VPS54-204ENST00000416400 HECTD4Q9Y4D8 3996 aa1.14□□□□□ -2.23
VPS54-204ENST00000416400 MYCBP2O75592 4640 aa1.14□□□□□ -2.23
VPS54-204ENST00000416400 CSMD3Q7Z407 3707 aa1.14□□□□□ -2.23
VPS54-204ENST00000416400 STARD9Q9P2P6 4700 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 KRTAP2-3P0C7H8 128 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 KRTAP2-4Q9BYR9 128 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 KRTAP2-1Q9BYU5 128 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 DNAH5Q8TE73 4624 aa1.13□□□□□ -2.23
VPS54-204ENST00000416400 DYNC1H1Q14204 4646 aaKnown RBP1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 106.3 ms