RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TNP1P09430 55 aa4.65□□□□□ -1.66
SYNE1-211ENST00000413186 XP32Q5T750 250 aa4.63□□□□□ -1.67
SYNE1-211ENST00000413186 DNAH17Q9UFH2 4485 aa4.63□□□□□ -1.67
SYNE1-211ENST00000413186 SRRM2Q9UQ35 2752 aaKnown RBP4.62□□□□□ -1.67
SYNE1-211ENST00000413186 KRTAP13-3Q3SY46 172 aa4.61□□□□□ -1.67
SYNE1-211ENST00000413186 PKD1P98161 4303 aa4.6□□□□□ -1.67
SYNE1-211ENST00000413186 KRTAP10-4P60372 401 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-211ENST00000413186 MYCBP2O75592 4640 aa4.56□□□□□ -1.68
SYNE1-211ENST00000413186 HYDINQ4G0P3 5121 aa4.55□□□□□ -1.68
SYNE1-211ENST00000413186 STARD9Q9P2P6 4700 aa4.55□□□□□ -1.68
SYNE1-211ENST00000413186 PLECQ15149 4684 aaKnown RBP4.53□□□□□ -1.68
SYNE1-211ENST00000413186 MT1HL1P0DM35 61 aa4.51□□□□□ -1.69
SYNE1-211ENST00000413186 DNAH11Q96DT5 4516 aa4.46□□□□□ -1.7
SYNE1-211ENST00000413186 KRTAP4-5Q9BYR2 181 aa4.44□□□□□ -1.7
SYNE1-211ENST00000413186 DNAH5Q8TE73 4624 aa4.41□□□□□ -1.7
SYNE1-211ENST00000413186 SACSQ9NZJ4 4579 aa4.37□□□□□ -1.71
SYNE1-211ENST00000413186 LPAP08519 4548 aa4.34□□□□□ -1.71
SYNE1-211ENST00000413186 DYNC1H1Q14204 4646 aaKnown RBP4.34□□□□□ -1.72
SYNE1-211ENST00000413186 LRP1BQ9NZR2 4599 aa4.29□□□□□ -1.72
SYNE1-211ENST00000413186 PKHD1L1Q86WI1 4243 aa4.27□□□□□ -1.73
SYNE1-211ENST00000413186 KRTAP23-1A1A580 65 aa4.26□□□□□ -1.73
SYNE1-211ENST00000413186 RYR2Q92736 4967 aa4.23□□□□□ -1.73
SYNE1-211ENST00000413186 H0YAA0 97 aa4.22□□□□□ -1.73
SYNE1-211ENST00000413186 KRTAP10-10P60014 251 aa4.2□□□□□ -1.74
SYNE1-211ENST00000413186 FAT1Q14517 4588 aa4.2□□□□□ -1.74
SYNE1-211ENST00000413186 HSPG2P98160 4391 aa4.2□□□□□ -1.74
SYNE1-211ENST00000413186 KIAA1109Q2LD37 5005 aa4.19□□□□□ -1.74
SYNE1-211ENST00000413186 TNXBP22105 4242 aa4.17□□□□□ -1.74
SYNE1-211ENST00000413186 RYR3Q15413 4870 aa4.17□□□□□ -1.74
SYNE1-211ENST00000413186 KRTAP3-1Q9BYR8 98 aa4.15□□□□□ -1.74
SYNE1-211ENST00000413186 FAT3Q8TDW7 4589 aa4.15□□□□□ -1.74
SYNE1-211ENST00000413186 RYR1P21817 5038 aa4.15□□□□□ -1.75
SYNE1-211ENST00000413186 KRTAP12-2P59991 146 aa4.15□□□□□ -1.75
SYNE1-211ENST00000413186 APOBP04114 4563 aaKnown RBP4.13□□□□□ -1.75
SYNE1-211ENST00000413186 INE1O15225 51 aa4.12□□□□□ -1.75
SYNE1-211ENST00000413186 KMT2CQ8NEZ4 4911 aaKnown RBP4.12□□□□□ -1.75
SYNE1-211ENST00000413186 BIRC6Q9NR09 4857 aa4.1□□□□□ -1.75
SYNE1-211ENST00000413186 PRO2289Q9P1D8 64 aa4.1□□□□□ -1.75
SYNE1-211ENST00000413186 KRTAP17-1Q9BYP8 105 aa4.09□□□□□ -1.75
SYNE1-211ENST00000413186 KRTAP10-6P60371 365 aaPredicted RBP4□□□□□ -1.77
SYNE1-211ENST00000413186 HERC2O95714 4834 aa3.99□□□□□ -1.77
SYNE1-211ENST00000413186 ABCA13Q86UQ4 5058 aa3.99□□□□□ -1.77
SYNE1-211ENST00000413186 KRTAP15-1Q3LI76 137 aa3.98□□□□□ -1.77
SYNE1-211ENST00000413186 KRTAP3-3Q9BYR6 98 aa3.96□□□□□ -1.78
SYNE1-211ENST00000413186 KRTAP12-1P59990 96 aa3.95□□□□□ -1.78
SYNE1-211ENST00000413186 KRTAP4-1Q9BYQ7 146 aa3.94□□□□□ -1.78
SYNE1-211ENST00000413186 KRTAP10-7P60409 375 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-211ENST00000413186 CRCT1Q9UGL9 99 aa3.93□□□□□ -1.78
SYNE1-211ENST00000413186 LRP1Q07954 4544 aaKnown RBP3.92□□□□□ -1.78
SYNE1-211ENST00000413186 KRTAP3-2Q9BYR7 98 aa3.91□□□□□ -1.78
SYNE1-211ENST00000413186 KRTAP13-4Q3LI77 160 aa3.91□□□□□ -1.78
SYNE1-211ENST00000413186 MUC2Q02817 5179 aa3.87□□□□□ -1.79
SYNE1-211ENST00000413186 EPPK1P58107 5090 aaKnown RBP3.86□□□□□ -1.79
SYNE1-211ENST00000413186 MT1HP80294 61 aa3.84□□□□□ -1.79
SYNE1-211ENST00000413186 PCLOQ9Y6V0 5065 aa3.81□□□□□ -1.8
SYNE1-211ENST00000413186 HERC1Q15751 4861 aa3.76□□□□□ -1.81
SYNE1-211ENST00000413186 KRTAP10-5P60370 271 aa3.73□□□□□ -1.81
SYNE1-211ENST00000413186 MT2AP02795 61 aa3.73□□□□□ -1.81
SYNE1-211ENST00000413186 FLGP20930 4061 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-211ENST00000413186 LORP23490 312 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-211ENST00000413186 LRP2P98164 4655 aa3.69□□□□□ -1.82
SYNE1-211ENST00000413186 MUC17Q685J3 4493 aa3.67□□□□□ -1.82
SYNE1-211ENST00000413186 SPRR2GQ9BYE4 73 aa3.66□□□□□ -1.82
SYNE1-211ENST00000413186 MT1FP04733 61 aa3.65□□□□□ -1.82
SYNE1-211ENST00000413186 LCE2CQ5TA81 110 aa3.63□□□□□ -1.83
SYNE1-211ENST00000413186 KRTAP10-12P60413 245 aa3.58□□□□□ -1.84
SYNE1-211ENST00000413186 KRTAP19-2Q3LHN2 52 aa3.57□□□□□ -1.84
SYNE1-211ENST00000413186 OBSCNQ5VST9 7968 aa3.56□□□□□ -1.84
SYNE1-211ENST00000413186 KRTAP9-8Q9BYQ0 159 aa3.54□□□□□ -1.84
SYNE1-211ENST00000413186 FAT4Q6V0I7 4981 aa3.52□□□□□ -1.85
SYNE1-211ENST00000413186 KRTAP19-8Q3LI54 63 aa3.52□□□□□ -1.85
SYNE1-211ENST00000413186 KRTAP19-1Q8IUB9 90 aa3.5□□□□□ -1.85
SYNE1-211ENST00000413186 HMCN2Q8NDA2 5059 aa3.5□□□□□ -1.85
SYNE1-211ENST00000413186 RNF213Q63HN8 5207 aa3.45□□□□□ -1.86
SYNE1-211ENST00000413186 KRTAP9-3Q9BYQ3 159 aa3.45□□□□□ -1.86
SYNE1-211ENST00000413186 LCE2AQ5TA79 106 aaPredicted RBP3.43□□□□□ -1.86
SYNE1-211ENST00000413186 UBR4Q5T4S7 5183 aa3.43□□□□□ -1.86
SYNE1-211ENST00000413186 KRTAP8-1Q8IUC2 63 aa3.43□□□□□ -1.86
SYNE1-211ENST00000413186 KRTAP12-3P60328 96 aa3.42□□□□□ -1.86
SYNE1-211ENST00000413186 LCE3AQ5TA76 89 aa3.41□□□□□ -1.86
SYNE1-211ENST00000413186 MT1BP07438 61 aa3.39□□□□□ -1.87
SYNE1-211ENST00000413186 SYNE1Q8NF91 8797 aaKnown RBP3.34□□□□□ -1.87
SYNE1-211ENST00000413186 LCE2BO14633 110 aa3.31□□□□□ -1.88
SYNE1-211ENST00000413186 MT1XP80297 61 aa3.31□□□□□ -1.88
SYNE1-211ENST00000413186 LCE2DQ5TA82 110 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-211ENST00000413186 KRTAP19-4Q3LI73 84 aa3.3□□□□□ -1.88
SYNE1-211ENST00000413186 MT3P25713 68 aa3.26□□□□□ -1.89
SYNE1-211ENST00000413186 KRTAP9-2Q9BYQ4 174 aa3.26□□□□□ -1.89
SYNE1-211ENST00000413186 SPRR2FQ96RM1 72 aa3.24□□□□□ -1.89
SYNE1-211ENST00000413186 KRTAP19-6Q3LI70 58 aa3.22□□□□□ -1.89
SYNE1-211ENST00000413186 KRTAP19-5Q3LI72 72 aa3.2□□□□□ -1.9
SYNE1-211ENST00000413186 USH2AO75445 5202 aa3.12□□□□□ -1.91
SYNE1-211ENST00000413186 KMT2DO14686 5537 aa3.11□□□□□ -1.91
SYNE1-211ENST00000413186 KRTAP9-6A0A140TA67 174 aa3.09□□□□□ -1.91
SYNE1-211ENST00000413186 KRTAP4-8A0A0G2JLE6 195 aa3.09□□□□□ -1.92
SYNE1-211ENST00000413186 KRTAP4-8Q9BYQ9 185 aa3.09□□□□□ -1.92
SYNE1-211ENST00000413186 SPRR2EP22531 72 aa3.08□□□□□ -1.92
SYNE1-211ENST00000413186 SPRR2BP35325 72 aa3.08□□□□□ -1.92
SYNE1-211ENST00000413186 SPRR2AP35326 72 aa3.08□□□□□ -1.92
SYNE1-211ENST00000413186 LCE3CQ5T5A8 94 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms