RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 FLNBO75369 2602 aaKnown RBP2.01□□□□□ -2.09
PTPN13-202ENST00000411767 CMYA5Q8N3K9 4069 aa2.01□□□□□ -2.09
PTPN13-202ENST00000411767 DNAH10Q8IVF4 4471 aa2.01□□□□□ -2.09
PTPN13-202ENST00000411767 MAST4O15021 2626 aa2.01□□□□□ -2.09
PTPN13-202ENST00000411767 PKD1L1Q8TDX9 2849 aa2.01□□□□□ -2.09
PTPN13-202ENST00000411767 DNAH9Q9NYC9 4486 aa2□□□□□ -2.09
PTPN13-202ENST00000411767 KRTAP10-4P60372 401 aaPredicted RBP2□□□□□ -2.09
PTPN13-202ENST00000411767 MYCBP2O75592 4640 aa2□□□□□ -2.09
PTPN13-202ENST00000411767 PLECQ15149 4684 aaKnown RBP1.99□□□□□ -2.09
PTPN13-202ENST00000411767 TENM3Q9P273 2699 aa1.99□□□□□ -2.09
PTPN13-202ENST00000411767 PCLOQ9Y6V0 5065 aa1.99□□□□□ -2.09
PTPN13-202ENST00000411767 DNAH8Q96JB1 4490 aa1.99□□□□□ -2.09
PTPN13-202ENST00000411767 ABCA13Q86UQ4 5058 aa1.98□□□□□ -2.09
PTPN13-202ENST00000411767 COL6A5A8TX70 2615 aa1.98□□□□□ -2.09
PTPN13-202ENST00000411767 CSMD3Q7Z407 3707 aa1.97□□□□□ -2.09
PTPN13-202ENST00000411767 DYNC1H1Q14204 4646 aaKnown RBP1.97□□□□□ -2.09
PTPN13-202ENST00000411767 KRTAP8-1Q8IUC2 63 aa1.96□□□□□ -2.1
PTPN13-202ENST00000411767 VPS13DQ5THJ4 4388 aa1.96□□□□□ -2.1
PTPN13-202ENST00000411767 FBN1P35555 2871 aaKnown RBP1.96□□□□□ -2.1
PTPN13-202ENST00000411767 LRP1BQ9NZR2 4599 aa1.95□□□□□ -2.1
PTPN13-202ENST00000411767 PKHD1L1Q86WI1 4243 aa1.95□□□□□ -2.1
PTPN13-202ENST00000411767 SACSQ9NZJ4 4579 aa1.94□□□□□ -2.1
PTPN13-202ENST00000411767 KRTAP3-1Q9BYR8 98 aa1.93□□□□□ -2.1
PTPN13-202ENST00000411767 DNAH5Q8TE73 4624 aa1.93□□□□□ -2.1
PTPN13-202ENST00000411767 COL7A1Q02388 2944 aa1.92□□□□□ -2.1
PTPN13-202ENST00000411767 HERC2O95714 4834 aa1.92□□□□□ -2.1
PTPN13-202ENST00000411767 HUWE1Q7Z6Z7 4374 aaKnown RBP1.92□□□□□ -2.1
PTPN13-202ENST00000411767 LCE3AQ5TA76 89 aa1.92□□□□□ -2.1
PTPN13-202ENST00000411767 KMT2CQ8NEZ4 4911 aaKnown RBP1.9□□□□□ -2.11
PTPN13-202ENST00000411767 BIRC6Q9NR09 4857 aa1.89□□□□□ -2.11
PTPN13-202ENST00000411767 KRTAP3-2Q9BYR7 98 aa1.89□□□□□ -2.11
PTPN13-202ENST00000411767 STARD9Q9P2P6 4700 aa1.89□□□□□ -2.11
PTPN13-202ENST00000411767 PRKDCP78527 4128 aaKnown RBP1.88□□□□□ -2.11
PTPN13-202ENST00000411767 TENM2Q9NT68 2774 aa1.88□□□□□ -2.11
PTPN13-202ENST00000411767 HMCN2Q8NDA2 5059 aa1.87□□□□□ -2.11
PTPN13-202ENST00000411767 DNAH7Q8WXX0 4024 aa1.86□□□□□ -2.11
PTPN13-202ENST00000411767 LYSTQ99698 3801 aa1.85□□□□□ -2.11
PTPN13-202ENST00000411767 PKD1P98161 4303 aa1.84□□□□□ -2.11
PTPN13-202ENST00000411767 APOBP04114 4563 aaKnown RBP1.84□□□□□ -2.12
PTPN13-202ENST00000411767 TGP01266 2768 aa1.83□□□□□ -2.12
PTPN13-202ENST00000411767 HSPG2P98160 4391 aa1.82□□□□□ -2.12
PTPN13-202ENST00000411767 HECTD4Q9Y4D8 3996 aa1.82□□□□□ -2.12
PTPN13-202ENST00000411767 LORP23490 312 aaPredicted RBP1.82□□□□□ -2.12
PTPN13-202ENST00000411767 FAT1Q14517 4588 aa1.82□□□□□ -2.12
PTPN13-202ENST00000411767 DNAH6Q9C0G6 4158 aa1.82□□□□□ -2.12
PTPN13-202ENST00000411767 SRRM2Q9UQ35 2752 aaKnown RBP1.81□□□□□ -2.12
PTPN13-202ENST00000411767 LCE3CQ5T5A8 94 aa1.81□□□□□ -2.12
PTPN13-202ENST00000411767 PKHD1P08F94 4074 aa1.8□□□□□ -2.12
PTPN13-202ENST00000411767 MEGF8Q7Z7M0 2845 aa1.8□□□□□ -2.12
PTPN13-202ENST00000411767 KMT2AQ03164 3969 aa1.79□□□□□ -2.12
PTPN13-202ENST00000411767 ALMS1Q8TCU4 4167 aa1.79□□□□□ -2.12
PTPN13-202ENST00000411767 FRAS1Q86XX4 4008 aa1.79□□□□□ -2.12
PTPN13-202ENST00000411767 FBN3Q75N90 2809 aa1.78□□□□□ -2.12
PTPN13-202ENST00000411767 KRTAP17-1Q9BYP8 105 aa1.78□□□□□ -2.12
PTPN13-202ENST00000411767 KIAA1109Q2LD37 5005 aa1.78□□□□□ -2.13
PTPN13-202ENST00000411767 KRTAP12-4P60329 112 aa1.76□□□□□ -2.13
PTPN13-202ENST00000411767 KRTAP3-3Q9BYR6 98 aa1.74□□□□□ -2.13
PTPN13-202ENST00000411767 HERC1Q15751 4861 aa1.73□□□□□ -2.13
PTPN13-202ENST00000411767 SPRR2FQ96RM1 72 aa1.72□□□□□ -2.13
PTPN13-202ENST00000411767 VPS13BQ7Z7G8 4022 aa1.71□□□□□ -2.14
PTPN13-202ENST00000411767 UBR4Q5T4S7 5183 aa1.7□□□□□ -2.14
PTPN13-202ENST00000411767 LCE3EQ5T5B0 92 aa1.7□□□□□ -2.14
PTPN13-202ENST00000411767 RNF213Q63HN8 5207 aa1.69□□□□□ -2.14
PTPN13-202ENST00000411767 LCE3DQ9BYE3 92 aa1.69□□□□□ -2.14
PTPN13-202ENST00000411767 MUC17Q685J3 4493 aa1.68□□□□□ -2.14
PTPN13-202ENST00000411767 SPRR2GQ9BYE4 73 aa1.67□□□□□ -2.14
PTPN13-202ENST00000411767 LCE3BQ5TA77 95 aa1.67□□□□□ -2.14
PTPN13-202ENST00000411767 LPAP08519 4548 aa1.67□□□□□ -2.14
PTPN13-202ENST00000411767 SPRR2EP22531 72 aa1.66□□□□□ -2.14
PTPN13-202ENST00000411767 SPRR2BP35325 72 aa1.66□□□□□ -2.14
PTPN13-202ENST00000411767 SPRR2AP35326 72 aa1.66□□□□□ -2.14
PTPN13-202ENST00000411767 MT1HL1P0DM35 61 aa1.65□□□□□ -2.15
PTPN13-202ENST00000411767 LRP1Q07954 4544 aaKnown RBP1.64□□□□□ -2.15
PTPN13-202ENST00000411767 SPRR2DP22532 72 aa1.64□□□□□ -2.15
PTPN13-202ENST00000411767 KRTAP19-5Q3LI72 72 aa1.64□□□□□ -2.15
PTPN13-202ENST00000411767 FAT4Q6V0I7 4981 aa1.63□□□□□ -2.15
PTPN13-202ENST00000411767 TNXBP22105 4242 aa1.63□□□□□ -2.15
PTPN13-202ENST00000411767 LCE2DQ5TA82 110 aaPredicted RBP1.63□□□□□ -2.15
PTPN13-202ENST00000411767 LCE2BO14633 110 aa1.62□□□□□ -2.15
PTPN13-202ENST00000411767 LRP2P98164 4655 aa1.61□□□□□ -2.15
PTPN13-202ENST00000411767 LCE2CQ5TA81 110 aa1.57□□□□□ -2.16
PTPN13-202ENST00000411767 PRM1P04553 51 aa1.52□□□□□ -2.17
PTPN13-202ENST00000411767 HMCN1Q96RW7 5635 aa1.52□□□□□ -2.17
PTPN13-202ENST00000411767 MUC5BQ9HC84 5762 aaPredicted RBP1.51□□□□□ -2.17
PTPN13-202ENST00000411767 USH2AO75445 5202 aa1.51□□□□□ -2.17
PTPN13-202ENST00000411767 MT1GP13640 62 aa1.51□□□□□ -2.17
PTPN13-202ENST00000411767 MUC2Q02817 5179 aa1.48□□□□□ -2.17
PTPN13-202ENST00000411767 SPRR5A0A1B0GTR4 108 aa1.48□□□□□ -2.17
PTPN13-202ENST00000411767 LCE1BQ5T7P3 118 aa1.48□□□□□ -2.17
PTPN13-202ENST00000411767 MT1HP80294 61 aa1.45□□□□□ -2.18
PTPN13-202ENST00000411767 SSPOA2VEC9 5147 aa1.44□□□□□ -2.18
PTPN13-202ENST00000411767 LCE1DQ5T752 114 aa1.44□□□□□ -2.18
PTPN13-202ENST00000411767 MT2AP02795 61 aa1.44□□□□□ -2.18
PTPN13-202ENST00000411767 LCE5AQ5TCM9 118 aa1.43□□□□□ -2.18
PTPN13-202ENST00000411767 LCE1CQ5T751 118 aa1.42□□□□□ -2.18
PTPN13-202ENST00000411767 LCE1EQ5T753 118 aa1.42□□□□□ -2.18
PTPN13-202ENST00000411767 LCE1FQ5T754 118 aa1.42□□□□□ -2.18
PTPN13-202ENST00000411767 LCE1AQ5T7P2 110 aa1.42□□□□□ -2.18
PTPN13-202ENST00000411767 KRTAP4-5Q9BYR2 181 aa1.42□□□□□ -2.18
PTPN13-202ENST00000411767 KRTAP19-2Q3LHN2 52 aa1.4□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms