RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 LRP2P98164 4655 aa10.32□□□□□ -0.76
USP39-204ENST00000409766 SEC61GP60059 68 aa10.32□□□□□ -0.76
USP39-204ENST00000409766 UQCR11O14957 56 aa10.31□□□□□ -0.76
USP39-204ENST00000409766 PMAIP1Q13794 54 aa10.28□□□□□ -0.76
USP39-204ENST00000409766 SPATA8Q6RVD6 105 aa10.28□□□□□ -0.76
USP39-204ENST00000409766 LPAP08519 4548 aa10.27□□□□□ -0.77
USP39-204ENST00000409766 J3QL48 77 aa10.26□□□□□ -0.77
USP39-204ENST00000409766 MIR22HGQ0VDD5 57 aa10.24□□□□□ -0.77
USP39-204ENST00000409766 KRTAP3-3Q9BYR6 98 aa10.21□□□□□ -0.78
USP39-204ENST00000409766 A6NN06 94 aa10.17□□□□□ -0.78
USP39-204ENST00000409766 S4R3F8 94 aa10.14□□□□□ -0.79
USP39-204ENST00000409766 H1FX-AS1Q4G0G2 97 aa10.11□□□□□ -0.79
USP39-204ENST00000409766 A0A1B0GU33 70 aa10.09□□□□□ -0.79
USP39-204ENST00000409766 H0YAA0 97 aa10.06□□□□□ -0.8
USP39-204ENST00000409766 PCLOQ9Y6V0 5065 aa10.04□□□□□ -0.8
USP39-204ENST00000409766 RBM12B-AS1Q9P1G2 102 aa10.04□□□□□ -0.8
USP39-204ENST00000409766 SEC61BP60468 96 aaKnown RBP10.01□□□□□ -0.81
USP39-204ENST00000409766 KRTAP10-6P60371 365 aaPredicted RBP9.98□□□□□ -0.81
USP39-204ENST00000409766 KTN1-AS1Q86SY8 53 aa9.98□□□□□ -0.81
USP39-204ENST00000409766 KRTAP3-2Q9BYR7 98 aa9.95□□□□□ -0.82
USP39-204ENST00000409766 MUC17Q685J3 4493 aa9.92□□□□□ -0.82
USP39-204ENST00000409766 KRTAP4-1Q9BYQ7 146 aa9.87□□□□□ -0.83
USP39-204ENST00000409766 CSAG1Q6PB30 78 aa9.85□□□□□ -0.83
USP39-204ENST00000409766 HERC1Q15751 4861 aa9.83□□□□□ -0.84
USP39-204ENST00000409766 P0C880 135 aa9.83□□□□□ -0.84
USP39-204ENST00000409766 KRTAP13-4Q3LI77 160 aa9.79□□□□□ -0.84
USP39-204ENST00000409766 ADM2Q7Z4H4 148 aa9.78□□□□□ -0.84
USP39-204ENST00000409766 HMCN2Q8NDA2 5059 aa9.72□□□□□ -0.85
USP39-204ENST00000409766 KRTAP19-2Q3LHN2 52 aa9.69□□□□□ -0.86
USP39-204ENST00000409766 K7ERS5 55 aa9.63□□□□□ -0.87
USP39-204ENST00000409766 A0A0D9SG42 100 aa9.62□□□□□ -0.87
USP39-204ENST00000409766 PRAC1Q96KF2 57 aa9.62□□□□□ -0.87
USP39-204ENST00000409766 MUC2Q02817 5179 aa9.59□□□□□ -0.87
USP39-204ENST00000409766 M0QZ58 72 aa9.55□□□□□ -0.88
USP39-204ENST00000409766 FLGP20930 4061 aaPredicted RBP9.45□□□□□ -0.9
USP39-204ENST00000409766 KRTAP12-2P59991 146 aa9.43□□□□□ -0.9
USP39-204ENST00000409766 KRTAP12-1P59990 96 aa9.41□□□□□ -0.9
USP39-204ENST00000409766 R4GN34 69 aa9.38□□□□□ -0.91
USP39-204ENST00000409766 LORP23490 312 aaPredicted RBP9.36□□□□□ -0.91
USP39-204ENST00000409766 ROMO1P60602 79 aa9.36□□□□□ -0.91
USP39-204ENST00000409766 SPINT4Q6UDR6 99 aa9.34□□□□□ -0.91
USP39-204ENST00000409766 UBR4Q5T4S7 5183 aa9.31□□□□□ -0.92
USP39-204ENST00000409766 LINC01554Q52M75 96 aa9.26□□□□□ -0.93
USP39-204ENST00000409766 LCE2CQ5TA81 110 aa9.26□□□□□ -0.93
USP39-204ENST00000409766 KRTAP25-1Q3LHN0 102 aa9.24□□□□□ -0.93
USP39-204ENST00000409766 RNF213Q63HN8 5207 aa9.21□□□□□ -0.93
USP39-204ENST00000409766 CRIPTQ9P021 101 aa9.19□□□□□ -0.94
USP39-204ENST00000409766 FAT4Q6V0I7 4981 aa9.15□□□□□ -0.94
USP39-204ENST00000409766 MT1HP80294 61 aa9.02□□□□□ -0.97
USP39-204ENST00000409766 C10orf95Q9H7T3 257 aa8.97□□□□□ -0.97
USP39-204ENST00000409766 M0R2T5 61 aa8.95□□□□□ -0.98
USP39-204ENST00000409766 CAMK2N1Q7Z7J9 78 aa8.83□□□□□ -1
USP39-204ENST00000409766 SPRR2GQ9BYE4 73 aa8.83□□□□□ -1
USP39-204ENST00000409766 KRTAP19-1Q8IUB9 90 aa8.78□□□□□ -1
USP39-204ENST00000409766 MT2AP02795 61 aa8.78□□□□□ -1
USP39-204ENST00000409766 KRTAP9-8Q9BYQ0 159 aa8.78□□□□□ -1
USP39-204ENST00000409766 MT1FP04733 61 aa8.75□□□□□ -1.01
USP39-204ENST00000409766 KRTAP10-10P60014 251 aa8.71□□□□□ -1.01
USP39-204ENST00000409766 PLAC4Q8WY50 150 aa8.6□□□□□ -1.03
USP39-204ENST00000409766 LCE2AQ5TA79 106 aaPredicted RBP8.54□□□□□ -1.04
USP39-204ENST00000409766 KRTAP19-8Q3LI54 63 aa8.51□□□□□ -1.05
USP39-204ENST00000409766 TNP1P09430 55 aa8.47□□□□□ -1.05
USP39-204ENST00000409766 PP632Q6XCG6 107 aa8.47□□□□□ -1.05
USP39-204ENST00000409766 KRTAP9-3Q9BYQ3 159 aa8.42□□□□□ -1.06
USP39-204ENST00000409766 MT1BP07438 61 aa8.39□□□□□ -1.07
USP39-204ENST00000409766 KRTAP23-1A1A580 65 aa8.34□□□□□ -1.07
USP39-204ENST00000409766 KRTAP15-1Q3LI76 137 aa8.33□□□□□ -1.08
USP39-204ENST00000409766 KRTAP10-5P60370 271 aa8.23□□□□□ -1.09
USP39-204ENST00000409766 MT1XP80297 61 aa8.23□□□□□ -1.09
USP39-204ENST00000409766 LCE2BO14633 110 aa8.13□□□□□ -1.11
USP39-204ENST00000409766 LCE3AQ5TA76 89 aa8.08□□□□□ -1.12
USP39-204ENST00000409766 PRO2289Q9P1D8 64 aa8□□□□□ -1.13
USP39-204ENST00000409766 KRTAP10-7P60409 375 aaPredicted RBP7.94□□□□□ -1.14
USP39-204ENST00000409766 KRTAP10-12P60413 245 aa7.92□□□□□ -1.14
USP39-204ENST00000409766 KRTAP8-1Q8IUC2 63 aa7.92□□□□□ -1.14
USP39-204ENST00000409766 USH2AO75445 5202 aa7.9□□□□□ -1.14
USP39-204ENST00000409766 NDUFAF8A1L188 74 aa7.9□□□□□ -1.15
USP39-204ENST00000409766 SPRR5A0A1B0GTR4 108 aa7.75□□□□□ -1.17
USP39-204ENST00000409766 KRTAP12-3P60328 96 aa7.73□□□□□ -1.17
USP39-204ENST00000409766 H3BS24 57 aa7.69□□□□□ -1.18
USP39-204ENST00000409766 LUZP6Q538Z0 58 aa7.67□□□□□ -1.18
USP39-204ENST00000409766 LCE2DQ5TA82 110 aaPredicted RBP7.66□□□□□ -1.18
USP39-204ENST00000409766 SSPOA2VEC9 5147 aa7.59□□□□□ -1.19
USP39-204ENST00000409766 KMT2DO14686 5537 aa7.56□□□□□ -1.2
USP39-204ENST00000409766 KRTAP19-6Q3LI70 58 aa7.56□□□□□ -1.2
USP39-204ENST00000409766 FSIP2Q5CZC0 6907 aa7.55□□□□□ -1.2
USP39-204ENST00000409766 KRTAP19-5Q3LI72 72 aa7.54□□□□□ -1.2
USP39-204ENST00000409766 KRTAP4-8A0A0G2JLE6 195 aa7.53□□□□□ -1.2
USP39-204ENST00000409766 KRTAP4-8Q9BYQ9 185 aa7.53□□□□□ -1.2
USP39-204ENST00000409766 KRTAP19-7Q3SYF9 63 aa7.34□□□□□ -1.23
USP39-204ENST00000409766 KRTAP9-2Q9BYQ4 174 aa7.3□□□□□ -1.24
USP39-204ENST00000409766 LCE3CQ5T5A8 94 aa7.26□□□□□ -1.25
USP39-204ENST00000409766 FCGBPQ9Y6R7 5405 aaPredicted RBP7.24□□□□□ -1.25
USP39-204ENST00000409766 MT1EP04732 61 aa7.16□□□□□ -1.26
USP39-204ENST00000409766 MT1LQ93083 61 aa7.09□□□□□ -1.27
USP39-204ENST00000409766 KRTAP19-4Q3LI73 84 aa7.08□□□□□ -1.28
USP39-204ENST00000409766 CRCT1Q9UGL9 99 aa7.06□□□□□ -1.28
USP39-204ENST00000409766 KRTAP4-7Q9BYR0 210 aa7.01□□□□□ -1.29
USP39-204ENST00000409766 A0A0A0MQY5 61 aa6.96□□□□□ -1.29
USP39-204ENST00000409766 KRTAP9-6A8MVA2 160 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms