RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 KRTAP4-5Q9BYR2 181 aa7.12□□□□□ -1.27
SCAF4-202ENST00000399804 H0YAA0 97 aa7.1□□□□□ -1.27
SCAF4-202ENST00000399804 ROMO1P60602 79 aa7.1□□□□□ -1.27
SCAF4-202ENST00000399804 HECTD4Q9Y4D8 3996 aa7.07□□□□□ -1.28
SCAF4-202ENST00000399804 DNAH6Q9C0G6 4158 aa7.04□□□□□ -1.28
SCAF4-202ENST00000399804 P0C880 135 aa7.03□□□□□ -1.28
SCAF4-202ENST00000399804 KRTAP25-1Q3LHN0 102 aa7□□□□□ -1.29
SCAF4-202ENST00000399804 KIAA1109Q2LD37 5005 aa6.96□□□□□ -1.29
SCAF4-202ENST00000399804 SACSQ9NZJ4 4579 aa6.95□□□□□ -1.3
SCAF4-202ENST00000399804 HYDINQ4G0P3 5121 aa6.94□□□□□ -1.3
SCAF4-202ENST00000399804 VPS13BQ7Z7G8 4022 aa6.94□□□□□ -1.3
SCAF4-202ENST00000399804 FAT2Q9NYQ8 4349 aa6.93□□□□□ -1.3
SCAF4-202ENST00000399804 RYR1P21817 5038 aa6.91□□□□□ -1.3
SCAF4-202ENST00000399804 PLAC4Q8WY50 150 aa6.89□□□□□ -1.31
SCAF4-202ENST00000399804 RYR3Q15413 4870 aa6.88□□□□□ -1.31
SCAF4-202ENST00000399804 APOBP04114 4563 aaKnown RBP6.84□□□□□ -1.31
SCAF4-202ENST00000399804 RYR2Q92736 4967 aa6.81□□□□□ -1.32
SCAF4-202ENST00000399804 PKHD1P08F94 4074 aa6.8□□□□□ -1.32
SCAF4-202ENST00000399804 MYCBP2O75592 4640 aa6.8□□□□□ -1.32
SCAF4-202ENST00000399804 C10orf95Q9H7T3 257 aa6.79□□□□□ -1.32
SCAF4-202ENST00000399804 LRP1Q07954 4544 aaKnown RBP6.77□□□□□ -1.33
SCAF4-202ENST00000399804 KRTAP10-6P60371 365 aaPredicted RBP6.77□□□□□ -1.33
SCAF4-202ENST00000399804 KRTAP3-3Q9BYR6 98 aa6.76□□□□□ -1.33
SCAF4-202ENST00000399804 KMT2CQ8NEZ4 4911 aaKnown RBP6.75□□□□□ -1.33
SCAF4-202ENST00000399804 KRTAP17-1Q9BYP8 105 aa6.74□□□□□ -1.33
SCAF4-202ENST00000399804 KRTAP10-10P60014 251 aa6.71□□□□□ -1.33
SCAF4-202ENST00000399804 KRTAP13-4Q3LI77 160 aa6.7□□□□□ -1.34
SCAF4-202ENST00000399804 KRTAP12-2P59991 146 aa6.66□□□□□ -1.34
SCAF4-202ENST00000399804 KRTAP3-2Q9BYR7 98 aa6.65□□□□□ -1.35
SCAF4-202ENST00000399804 FAT3Q8TDW7 4589 aa6.63□□□□□ -1.35
SCAF4-202ENST00000399804 PKD1P98161 4303 aa6.63□□□□□ -1.35
SCAF4-202ENST00000399804 LUZP6Q538Z0 58 aa6.62□□□□□ -1.35
SCAF4-202ENST00000399804 TNP1P09430 55 aa6.61□□□□□ -1.35
SCAF4-202ENST00000399804 KRTAP12-1P59990 96 aa6.61□□□□□ -1.35
SCAF4-202ENST00000399804 NDUFAF8A1L188 74 aa6.61□□□□□ -1.35
SCAF4-202ENST00000399804 HSPG2P98160 4391 aa6.53□□□□□ -1.36
SCAF4-202ENST00000399804 KRTAP4-1Q9BYQ7 146 aa6.5□□□□□ -1.37
SCAF4-202ENST00000399804 HERC2O95714 4834 aa6.5□□□□□ -1.37
SCAF4-202ENST00000399804 PP632Q6XCG6 107 aa6.41□□□□□ -1.38
SCAF4-202ENST00000399804 LRP2P98164 4655 aa6.4□□□□□ -1.39
SCAF4-202ENST00000399804 EPPK1P58107 5090 aaKnown RBP6.36□□□□□ -1.39
SCAF4-202ENST00000399804 LORP23490 312 aaPredicted RBP6.36□□□□□ -1.39
SCAF4-202ENST00000399804 BIRC6Q9NR09 4857 aa6.31□□□□□ -1.4
SCAF4-202ENST00000399804 KRTAP15-1Q3LI76 137 aa6.28□□□□□ -1.4
SCAF4-202ENST00000399804 PRO2289Q9P1D8 64 aa6.27□□□□□ -1.41
SCAF4-202ENST00000399804 PKHD1L1Q86WI1 4243 aa6.2□□□□□ -1.42
SCAF4-202ENST00000399804 ABCA13Q86UQ4 5058 aa6.18□□□□□ -1.42
SCAF4-202ENST00000399804 LPAP08519 4548 aa6.17□□□□□ -1.42
SCAF4-202ENST00000399804 TNXBP22105 4242 aa6.17□□□□□ -1.42
SCAF4-202ENST00000399804 MT1HP80294 61 aa6.1□□□□□ -1.43
SCAF4-202ENST00000399804 A0A0A0MQY5 61 aa6.06□□□□□ -1.44
SCAF4-202ENST00000399804 HERC1Q15751 4861 aa6.02□□□□□ -1.45
SCAF4-202ENST00000399804 MT2AP02795 61 aa5.99□□□□□ -1.45
SCAF4-202ENST00000399804 PCLOQ9Y6V0 5065 aa5.95□□□□□ -1.46
SCAF4-202ENST00000399804 MT1FP04733 61 aa5.93□□□□□ -1.46
SCAF4-202ENST00000399804 SPRR2GQ9BYE4 73 aa5.9□□□□□ -1.46
SCAF4-202ENST00000399804 LCE2CQ5TA81 110 aa5.85□□□□□ -1.47
SCAF4-202ENST00000399804 KRTAP10-12P60413 245 aa5.85□□□□□ -1.47
SCAF4-202ENST00000399804 KRTAP19-2Q3LHN2 52 aa5.82□□□□□ -1.48
SCAF4-202ENST00000399804 LCE3AQ5TA76 89 aa5.78□□□□□ -1.48
SCAF4-202ENST00000399804 KRTAP19-1Q8IUB9 90 aa5.78□□□□□ -1.48
SCAF4-202ENST00000399804 MUC2Q02817 5179 aa5.76□□□□□ -1.49
SCAF4-202ENST00000399804 MUC17Q685J3 4493 aa5.74□□□□□ -1.49
SCAF4-202ENST00000399804 KRTAP23-1A1A580 65 aa5.73□□□□□ -1.49
SCAF4-202ENST00000399804 KRTAP9-8Q9BYQ0 159 aa5.7□□□□□ -1.5
SCAF4-202ENST00000399804 KRTAP12-3P60328 96 aa5.7□□□□□ -1.5
SCAF4-202ENST00000399804 RNF213Q63HN8 5207 aa5.69□□□□□ -1.5
SCAF4-202ENST00000399804 HMCN2Q8NDA2 5059 aa5.68□□□□□ -1.5
SCAF4-202ENST00000399804 FLGP20930 4061 aaPredicted RBP5.67□□□□□ -1.5
SCAF4-202ENST00000399804 UBR4Q5T4S7 5183 aa5.64□□□□□ -1.51
SCAF4-202ENST00000399804 FAT4Q6V0I7 4981 aa5.61□□□□□ -1.51
SCAF4-202ENST00000399804 KRTAP19-8Q3LI54 63 aa5.61□□□□□ -1.51
SCAF4-202ENST00000399804 MT1BP07438 61 aa5.53□□□□□ -1.52
SCAF4-202ENST00000399804 KRTAP9-3Q9BYQ3 159 aa5.5□□□□□ -1.53
SCAF4-202ENST00000399804 MT1XP80297 61 aa5.46□□□□□ -1.54
SCAF4-202ENST00000399804 KRTAP10-5P60370 271 aa5.42□□□□□ -1.54
SCAF4-202ENST00000399804 KRTAP10-7P60409 375 aaPredicted RBP5.42□□□□□ -1.54
SCAF4-202ENST00000399804 KRTAP8-1Q8IUC2 63 aa5.4□□□□□ -1.55
SCAF4-202ENST00000399804 FSIP2Q5CZC0 6907 aa5.35□□□□□ -1.55
SCAF4-202ENST00000399804 LCE2BO14633 110 aa5.34□□□□□ -1.55
SCAF4-202ENST00000399804 KRTAP19-5Q3LI72 72 aa5.33□□□□□ -1.56
SCAF4-202ENST00000399804 CRCT1Q9UGL9 99 aa5.29□□□□□ -1.56
SCAF4-202ENST00000399804 SPRR5A0A1B0GTR4 108 aa5.26□□□□□ -1.57
SCAF4-202ENST00000399804 LCE2AQ5TA79 106 aaPredicted RBP5.25□□□□□ -1.57
SCAF4-202ENST00000399804 KRTAP4-8A0A0G2JLE6 195 aa5.21□□□□□ -1.57
SCAF4-202ENST00000399804 KRTAP4-8Q9BYQ9 185 aa5.21□□□□□ -1.57
SCAF4-202ENST00000399804 LCE3CQ5T5A8 94 aa5.12□□□□□ -1.59
SCAF4-202ENST00000399804 SPRR2FQ96RM1 72 aa5.12□□□□□ -1.59
SCAF4-202ENST00000399804 INE1O15225 51 aa5.02□□□□□ -1.61
SCAF4-202ENST00000399804 USH2AO75445 5202 aa4.94□□□□□ -1.62
SCAF4-202ENST00000399804 KRTAP19-4Q3LI73 84 aa4.92□□□□□ -1.62
SCAF4-202ENST00000399804 KRTAP19-6Q3LI70 58 aa4.92□□□□□ -1.62
SCAF4-202ENST00000399804 KMT2DO14686 5537 aa4.86□□□□□ -1.63
SCAF4-202ENST00000399804 KRTAP4-7Q9BYR0 210 aa4.84□□□□□ -1.63
SCAF4-202ENST00000399804 MT1EP04732 61 aa4.83□□□□□ -1.64
SCAF4-202ENST00000399804 MT1LQ93083 61 aa4.81□□□□□ -1.64
SCAF4-202ENST00000399804 MT1GP13640 62 aa4.8□□□□□ -1.64
SCAF4-202ENST00000399804 LCE2DQ5TA82 110 aaPredicted RBP4.78□□□□□ -1.64
SCAF4-202ENST00000399804 KRTAP9-2Q9BYQ4 174 aa4.78□□□□□ -1.64
SCAF4-202ENST00000399804 KRTAP19-7Q3SYF9 63 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms