RNA–Protein interactions for RNA: ENST00000399438.7

TRAPPC13-202, Transcript of trafficking protein particle complex 13, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TRAPPC13, Length 3,221 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC13-202ENST00000399438 KRTAP13-2Q52LG2 175 aa3.39□□□□□ -1.87
TRAPPC13-202ENST00000399438 KRTAP19-4Q3LI73 84 aa3.38□□□□□ -1.87
TRAPPC13-202ENST00000399438 SPATA8Q6RVD6 105 aa3.38□□□□□ -1.87
TRAPPC13-202ENST00000399438 COA5Q86WW8 74 aa3.37□□□□□ -1.87
TRAPPC13-202ENST00000399438 MRPL34Q9BQ48 92 aaKnown RBP3.37□□□□□ -1.87
TRAPPC13-202ENST00000399438 LRP1Q07954 4544 aaKnown RBP3.37□□□□□ -1.87
TRAPPC13-202ENST00000399438 LINC00304Q8N9R0 145 aa3.36□□□□□ -1.87
TRAPPC13-202ENST00000399438 APOBP04114 4563 aaKnown RBP3.34□□□□□ -1.87
TRAPPC13-202ENST00000399438 Q6ZSA8 131 aa3.34□□□□□ -1.87
TRAPPC13-202ENST00000399438 C9orf92A6NGG3 77 aa3.34□□□□□ -1.88
TRAPPC13-202ENST00000399438 SPINK1P00995 79 aa3.32□□□□□ -1.88
TRAPPC13-202ENST00000399438 KRTAP1-4P0C5Y4 121 aa3.32□□□□□ -1.88
TRAPPC13-202ENST00000399438 LCE5AQ5TCM9 118 aa3.32□□□□□ -1.88
TRAPPC13-202ENST00000399438 EPPK1P58107 5090 aaKnown RBP3.3□□□□□ -1.88
TRAPPC13-202ENST00000399438 KIAA1109Q2LD37 5005 aa3.3□□□□□ -1.88
TRAPPC13-202ENST00000399438 FAT3Q8TDW7 4589 aa3.3□□□□□ -1.88
TRAPPC13-202ENST00000399438 TP53AIP1Q9HCN2 124 aa3.29□□□□□ -1.88
TRAPPC13-202ENST00000399438 KRTAP10-8P60410 259 aa3.29□□□□□ -1.88
TRAPPC13-202ENST00000399438 HSPG2P98160 4391 aa3.28□□□□□ -1.88
TRAPPC13-202ENST00000399438 SSBP3-AS1Q7Z2R9 100 aa3.28□□□□□ -1.88
TRAPPC13-202ENST00000399438 KRTAP13-3Q3SY46 172 aa3.26□□□□□ -1.89
TRAPPC13-202ENST00000399438 RYR1P21817 5038 aa3.26□□□□□ -1.89
TRAPPC13-202ENST00000399438 PKHD1L1Q86WI1 4243 aa3.25□□□□□ -1.89
TRAPPC13-202ENST00000399438 BIRC6Q9NR09 4857 aa3.24□□□□□ -1.89
TRAPPC13-202ENST00000399438 KRTAP10-4P60372 401 aaPredicted RBP3.23□□□□□ -1.89
TRAPPC13-202ENST00000399438 KRTAP17-1Q9BYP8 105 aa3.22□□□□□ -1.89
TRAPPC13-202ENST00000399438 INE1O15225 51 aa3.21□□□□□ -1.9
TRAPPC13-202ENST00000399438 ACYP2P14621 99 aa3.2□□□□□ -1.9
TRAPPC13-202ENST00000399438 KRTAP9-4Q9BYQ2 154 aa3.2□□□□□ -1.9
TRAPPC13-202ENST00000399438 HERC2O95714 4834 aa3.19□□□□□ -1.9
TRAPPC13-202ENST00000399438 Q5VSD8 79 aa3.19□□□□□ -1.9
TRAPPC13-202ENST00000399438 LPAP08519 4548 aa3.19□□□□□ -1.9
TRAPPC13-202ENST00000399438 A0A1B0GU69 56 aa3.17□□□□□ -1.9
TRAPPC13-202ENST00000399438 LRP2P98164 4655 aa3.16□□□□□ -1.9
TRAPPC13-202ENST00000399438 ABCA13Q86UQ4 5058 aa3.15□□□□□ -1.9
TRAPPC13-202ENST00000399438 KRTAP4-5Q9BYR2 181 aa3.14□□□□□ -1.91
TRAPPC13-202ENST00000399438 TNXBP22105 4242 aa3.13□□□□□ -1.91
TRAPPC13-202ENST00000399438 CRIPTQ9P021 101 aa3.09□□□□□ -1.91
TRAPPC13-202ENST00000399438 MUC2Q02817 5179 aa3.08□□□□□ -1.92
TRAPPC13-202ENST00000399438 KRTAP2-2Q9BYT5 123 aa3.08□□□□□ -1.92
TRAPPC13-202ENST00000399438 MT1HL1P0DM35 61 aa3.07□□□□□ -1.92
TRAPPC13-202ENST00000399438 KRTAP9-9Q9BYP9 154 aa3.06□□□□□ -1.92
TRAPPC13-202ENST00000399438 A0A0D9SG42 100 aa3.05□□□□□ -1.92
TRAPPC13-202ENST00000399438 PCLOQ9Y6V0 5065 aa3.04□□□□□ -1.92
TRAPPC13-202ENST00000399438 H0YAA0 97 aa3.04□□□□□ -1.92
TRAPPC13-202ENST00000399438 LOC100996750A0A140TA64 210 aa3.03□□□□□ -1.92
TRAPPC13-202ENST00000399438 KRTAP4-6Q9BYQ5 205 aa3.03□□□□□ -1.92
TRAPPC13-202ENST00000399438 RPS29P62273 56 aaKnown RBP3.02□□□□□ -1.93
TRAPPC13-202ENST00000399438 PLAC4Q8WY50 150 aa3.02□□□□□ -1.93
TRAPPC13-202ENST00000399438 XP32Q5T750 250 aa3.02□□□□□ -1.93
TRAPPC13-202ENST00000399438 COX6B2Q6YFQ2 88 aa2.99□□□□□ -1.93
TRAPPC13-202ENST00000399438 KRTAP9-6A0A140TA67 174 aa2.99□□□□□ -1.93
TRAPPC13-202ENST00000399438 KRTAP9-7A8MTY7 169 aa2.99□□□□□ -1.93
TRAPPC13-202ENST00000399438 HERC1Q15751 4861 aa2.99□□□□□ -1.93
TRAPPC13-202ENST00000399438 KRTAP13-4Q3LI77 160 aa2.97□□□□□ -1.93
TRAPPC13-202ENST00000399438 H1FX-AS1Q4G0G2 97 aa2.97□□□□□ -1.93
TRAPPC13-202ENST00000399438 KRTAP12-2P59991 146 aa2.97□□□□□ -1.93
TRAPPC13-202ENST00000399438 RPL37P61927 97 aaKnown RBP2.97□□□□□ -1.93
TRAPPC13-202ENST00000399438 FAT4Q6V0I7 4981 aa2.94□□□□□ -1.94
TRAPPC13-202ENST00000399438 LCE1FQ5T754 118 aa2.94□□□□□ -1.94
TRAPPC13-202ENST00000399438 RNF213Q63HN8 5207 aa2.93□□□□□ -1.94
TRAPPC13-202ENST00000399438 S4R3F8 94 aa2.93□□□□□ -1.94
TRAPPC13-202ENST00000399438 PP632Q6XCG6 107 aa2.93□□□□□ -1.94
TRAPPC13-202ENST00000399438 KRTAP10-6P60371 365 aaPredicted RBP2.92□□□□□ -1.94
TRAPPC13-202ENST00000399438 HMCN2Q8NDA2 5059 aa2.91□□□□□ -1.94
TRAPPC13-202ENST00000399438 C10orf95Q9H7T3 257 aa2.9□□□□□ -1.94
TRAPPC13-202ENST00000399438 LCE4AQ5TA78 99 aa2.89□□□□□ -1.95
TRAPPC13-202ENST00000399438 LCE1AQ5T7P2 110 aa2.89□□□□□ -1.95
TRAPPC13-202ENST00000399438 MUC17Q685J3 4493 aa2.88□□□□□ -1.95
TRAPPC13-202ENST00000399438 KRTAP4-1Q9BYQ7 146 aa2.86□□□□□ -1.95
TRAPPC13-202ENST00000399438 UBR4Q5T4S7 5183 aa2.85□□□□□ -1.95
TRAPPC13-202ENST00000399438 MT3P25713 68 aa2.82□□□□□ -1.96
TRAPPC13-202ENST00000399438 M0QZ58 72 aa2.81□□□□□ -1.96
TRAPPC13-202ENST00000399438 KRTAP12-1P59990 96 aa2.78□□□□□ -1.96
TRAPPC13-202ENST00000399438 KRTAP9-3Q9BYQ3 159 aa2.78□□□□□ -1.96
TRAPPC13-202ENST00000399438 FLGP20930 4061 aaPredicted RBP2.69□□□□□ -1.98
TRAPPC13-202ENST00000399438 SPRR5A0A1B0GTR4 108 aa2.68□□□□□ -1.98
TRAPPC13-202ENST00000399438 KRTAP19-2Q3LHN2 52 aa2.68□□□□□ -1.98
TRAPPC13-202ENST00000399438 KRTAP19-1Q8IUB9 90 aa2.66□□□□□ -1.98
TRAPPC13-202ENST00000399438 LCE3CQ5T5A8 94 aa2.66□□□□□ -1.98
TRAPPC13-202ENST00000399438 M0R2T5 61 aa2.65□□□□□ -1.99
TRAPPC13-202ENST00000399438 USH2AO75445 5202 aa2.64□□□□□ -1.99
TRAPPC13-202ENST00000399438 MT1HP80294 61 aa2.59□□□□□ -1.99
TRAPPC13-202ENST00000399438 FSIP2Q5CZC0 6907 aa2.59□□□□□ -1.99
TRAPPC13-202ENST00000399438 LCE1EQ5T753 118 aa2.59□□□□□ -1.99
TRAPPC13-202ENST00000399438 KRTAP9-8Q9BYQ0 159 aa2.59□□□□□ -1.99
TRAPPC13-202ENST00000399438 KRTAP4-8Q9BYQ9 185 aa2.57□□□□□ -2
TRAPPC13-202ENST00000399438 KRTAP10-12P60413 245 aa2.57□□□□□ -2
TRAPPC13-202ENST00000399438 KMT2DO14686 5537 aa2.54□□□□□ -2
TRAPPC13-202ENST00000399438 KRTAP10-10P60014 251 aa2.53□□□□□ -2
TRAPPC13-202ENST00000399438 KRTAP5-3Q6L8H2 238 aa2.53□□□□□ -2
TRAPPC13-202ENST00000399438 KRTAP6-3Q3LI67 103 aa2.52□□□□□ -2.01
TRAPPC13-202ENST00000399438 MT1FP04733 61 aa2.51□□□□□ -2.01
TRAPPC13-202ENST00000399438 LCE1DQ5T752 114 aa2.5□□□□□ -2.01
TRAPPC13-202ENST00000399438 KRTAP4-12Q9BQ66 201 aa2.49□□□□□ -2.01
TRAPPC13-202ENST00000399438 MT2AP02795 61 aa2.47□□□□□ -2.01
TRAPPC13-202ENST00000399438 LCE3EQ5T5B0 92 aa2.46□□□□□ -2.02
TRAPPC13-202ENST00000399438 KRTAP4-8A0A0G2JLE6 195 aa2.46□□□□□ -2.02
TRAPPC13-202ENST00000399438 TNP1P09430 55 aa2.45□□□□□ -2.02
TRAPPC13-202ENST00000399438 KRTAP9-2Q9BYQ4 174 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms