RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 KRTAP19-4Q3LI73 84 aa2.63□□□□□ -1.99
SMAD4-202ENST00000398417 MEGF8Q7Z7M0 2845 aa2.63□□□□□ -1.99
SMAD4-202ENST00000398417 LRP1BQ9NZR2 4599 aa2.63□□□□□ -1.99
SMAD4-202ENST00000398417 A0A1B0GVY2 172 aa2.63□□□□□ -1.99
SMAD4-202ENST00000398417 FAT2Q9NYQ8 4349 aa2.62□□□□□ -1.99
SMAD4-202ENST00000398417 KRTAP3-1Q9BYR8 98 aa2.61□□□□□ -1.99
SMAD4-202ENST00000398417 KRTAP3-3Q9BYR6 98 aa2.6□□□□□ -1.99
SMAD4-202ENST00000398417 KRTAP3-2Q9BYR7 98 aa2.6□□□□□ -1.99
SMAD4-202ENST00000398417 RYR2Q92736 4967 aa2.6□□□□□ -1.99
SMAD4-202ENST00000398417 VPS13DQ5THJ4 4388 aa2.59□□□□□ -1.99
SMAD4-202ENST00000398417 H0YAA0 97 aa2.58□□□□□ -2
SMAD4-202ENST00000398417 DNAH2Q9P225 4427 aa2.57□□□□□ -2
SMAD4-202ENST00000398417 DNAH5Q8TE73 4624 aa2.56□□□□□ -2
SMAD4-202ENST00000398417 KRTAP10-7P60409 375 aaPredicted RBP2.56□□□□□ -2
SMAD4-202ENST00000398417 INE1O15225 51 aa2.56□□□□□ -2
SMAD4-202ENST00000398417 XP32Q5T750 250 aa2.55□□□□□ -2
SMAD4-202ENST00000398417 HERC1Q15751 4861 aa2.55□□□□□ -2
SMAD4-202ENST00000398417 TNP1P09430 55 aa2.55□□□□□ -2
SMAD4-202ENST00000398417 KRTAP10-4P60372 401 aaPredicted RBP2.55□□□□□ -2
SMAD4-202ENST00000398417 KRTAP10-8P60410 259 aa2.54□□□□□ -2
SMAD4-202ENST00000398417 RYR1P21817 5038 aa2.54□□□□□ -2
SMAD4-202ENST00000398417 STARD9Q9P2P6 4700 aa2.54□□□□□ -2
SMAD4-202ENST00000398417 PKD1P98161 4303 aa2.5□□□□□ -2.01
SMAD4-202ENST00000398417 HYDINQ4G0P3 5121 aa2.5□□□□□ -2.01
SMAD4-202ENST00000398417 FAT1Q14517 4588 aa2.49□□□□□ -2.01
SMAD4-202ENST00000398417 KRTAP13-4Q3LI77 160 aa2.49□□□□□ -2.01
SMAD4-202ENST00000398417 HSPG2P98160 4391 aa2.49□□□□□ -2.01
SMAD4-202ENST00000398417 FAT3Q8TDW7 4589 aa2.48□□□□□ -2.01
SMAD4-202ENST00000398417 MYCBP2O75592 4640 aa2.47□□□□□ -2.01
SMAD4-202ENST00000398417 KRTAP10-6P60371 365 aaPredicted RBP2.46□□□□□ -2.02
SMAD4-202ENST00000398417 KRTAP15-1Q3LI76 137 aa2.46□□□□□ -2.02
SMAD4-202ENST00000398417 PRO2289Q9P1D8 64 aa2.46□□□□□ -2.02
SMAD4-202ENST00000398417 ALMS1Q8TCU4 4167 aa2.45□□□□□ -2.02
SMAD4-202ENST00000398417 RYR3Q15413 4870 aa2.44□□□□□ -2.02
SMAD4-202ENST00000398417 MT1HL1P0DM35 61 aa2.44□□□□□ -2.02
SMAD4-202ENST00000398417 KIAA1109Q2LD37 5005 aa2.44□□□□□ -2.02
SMAD4-202ENST00000398417 TPRXLQ17RH7 258 aa2.44□□□□□ -2.02
SMAD4-202ENST00000398417 KRTAP12-2P59991 146 aa2.43□□□□□ -2.02
SMAD4-202ENST00000398417 MT3P25713 68 aa2.43□□□□□ -2.02
SMAD4-202ENST00000398417 KRTAP17-1Q9BYP8 105 aa2.43□□□□□ -2.02
SMAD4-202ENST00000398417 APOBP04114 4563 aaKnown RBP2.42□□□□□ -2.02
SMAD4-202ENST00000398417 KRTAP10-10P60014 251 aa2.42□□□□□ -2.02
SMAD4-202ENST00000398417 KMT2CQ8NEZ4 4911 aaKnown RBP2.4□□□□□ -2.02
SMAD4-202ENST00000398417 PKHD1L1Q86WI1 4243 aa2.4□□□□□ -2.03
SMAD4-202ENST00000398417 KRTAP4-5Q9BYR2 181 aa2.4□□□□□ -2.03
SMAD4-202ENST00000398417 KRTAP12-1P59990 96 aa2.38□□□□□ -2.03
SMAD4-202ENST00000398417 BIRC6Q9NR09 4857 aa2.37□□□□□ -2.03
SMAD4-202ENST00000398417 LORP23490 312 aaPredicted RBP2.35□□□□□ -2.03
SMAD4-202ENST00000398417 EPPK1P58107 5090 aaKnown RBP2.33□□□□□ -2.04
SMAD4-202ENST00000398417 ABCA13Q86UQ4 5058 aa2.33□□□□□ -2.04
SMAD4-202ENST00000398417 TNXBP22105 4242 aa2.32□□□□□ -2.04
SMAD4-202ENST00000398417 KRTAP4-1Q9BYQ7 146 aa2.31□□□□□ -2.04
SMAD4-202ENST00000398417 HERC2O95714 4834 aa2.3□□□□□ -2.04
SMAD4-202ENST00000398417 LPAP08519 4548 aa2.28□□□□□ -2.04
SMAD4-202ENST00000398417 CRCT1Q9UGL9 99 aa2.28□□□□□ -2.04
SMAD4-202ENST00000398417 LRP1Q07954 4544 aaKnown RBP2.26□□□□□ -2.05
SMAD4-202ENST00000398417 HMCN2Q8NDA2 5059 aa2.21□□□□□ -2.06
SMAD4-202ENST00000398417 PCLOQ9Y6V0 5065 aa2.19□□□□□ -2.06
SMAD4-202ENST00000398417 MUC17Q685J3 4493 aa2.12□□□□□ -2.07
SMAD4-202ENST00000398417 FLGP20930 4061 aaPredicted RBP2.1□□□□□ -2.07
SMAD4-202ENST00000398417 RNF213Q63HN8 5207 aa2.1□□□□□ -2.07
SMAD4-202ENST00000398417 KRTAP19-2Q3LHN2 52 aa2.1□□□□□ -2.07
SMAD4-202ENST00000398417 KRTAP12-3P60328 96 aa2.1□□□□□ -2.07
SMAD4-202ENST00000398417 LCE3AQ5TA76 89 aa2.09□□□□□ -2.07
SMAD4-202ENST00000398417 UBR4Q5T4S7 5183 aa2.09□□□□□ -2.08
SMAD4-202ENST00000398417 MT1HP80294 61 aa2.08□□□□□ -2.08
SMAD4-202ENST00000398417 LRP2P98164 4655 aa2.07□□□□□ -2.08
SMAD4-202ENST00000398417 MT2AP02795 61 aa2.06□□□□□ -2.08
SMAD4-202ENST00000398417 MT1FP04733 61 aa2.06□□□□□ -2.08
SMAD4-202ENST00000398417 KRTAP10-12P60413 245 aa2.05□□□□□ -2.08
SMAD4-202ENST00000398417 LCE2CQ5TA81 110 aa2.04□□□□□ -2.08
SMAD4-202ENST00000398417 FAT4Q6V0I7 4981 aa2.02□□□□□ -2.09
SMAD4-202ENST00000398417 KRTAP19-1Q8IUB9 90 aa2□□□□□ -2.09
SMAD4-202ENST00000398417 KRTAP10-5P60370 271 aa2□□□□□ -2.09
SMAD4-202ENST00000398417 SPRR2GQ9BYE4 73 aa2□□□□□ -2.09
SMAD4-202ENST00000398417 MT1BP07438 61 aa1.96□□□□□ -2.1
SMAD4-202ENST00000398417 KRTAP9-8Q9BYQ0 159 aa1.94□□□□□ -2.1
SMAD4-202ENST00000398417 SPRR5A0A1B0GTR4 108 aa1.93□□□□□ -2.1
SMAD4-202ENST00000398417 KRTAP19-8Q3LI54 63 aa1.93□□□□□ -2.1
SMAD4-202ENST00000398417 KRTAP8-1Q8IUC2 63 aa1.93□□□□□ -2.1
SMAD4-202ENST00000398417 MUC2Q02817 5179 aa1.92□□□□□ -2.1
SMAD4-202ENST00000398417 MT1XP80297 61 aa1.92□□□□□ -2.1
SMAD4-202ENST00000398417 LCE2DQ5TA82 110 aaPredicted RBP1.9□□□□□ -2.1
SMAD4-202ENST00000398417 KRTAP9-3Q9BYQ3 159 aa1.89□□□□□ -2.11
SMAD4-202ENST00000398417 KRTAP19-5Q3LI72 72 aa1.88□□□□□ -2.11
SMAD4-202ENST00000398417 LCE3BQ5TA77 95 aa1.87□□□□□ -2.11
SMAD4-202ENST00000398417 KRTAP9-2Q9BYQ4 174 aa1.86□□□□□ -2.11
SMAD4-202ENST00000398417 KRTAP4-8A0A0G2JLE6 195 aa1.85□□□□□ -2.11
SMAD4-202ENST00000398417 KRTAP4-8Q9BYQ9 185 aa1.85□□□□□ -2.11
SMAD4-202ENST00000398417 LCE2BO14633 110 aa1.84□□□□□ -2.12
SMAD4-202ENST00000398417 USH2AO75445 5202 aa1.81□□□□□ -2.12
SMAD4-202ENST00000398417 SPRR2FQ96RM1 72 aa1.81□□□□□ -2.12
SMAD4-202ENST00000398417 LCE3CQ5T5A8 94 aa1.8□□□□□ -2.12
SMAD4-202ENST00000398417 KRTAP4-7Q9BYR0 210 aa1.8□□□□□ -2.12
SMAD4-202ENST00000398417 KRTAP9-6A0A140TA67 174 aa1.77□□□□□ -2.13
SMAD4-202ENST00000398417 SPRR2EP22531 72 aa1.74□□□□□ -2.13
SMAD4-202ENST00000398417 SPRR2BP35325 72 aa1.74□□□□□ -2.13
SMAD4-202ENST00000398417 SPRR2AP35326 72 aa1.74□□□□□ -2.13
SMAD4-202ENST00000398417 LCE3DQ9BYE3 92 aa1.72□□□□□ -2.13
SMAD4-202ENST00000398417 SSPOA2VEC9 5147 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms