RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 ROMO1P60602 79 aa4.07□□□□□ -1.76
PTPRD-204ENST00000397606 DNAH6Q9C0G6 4158 aa4.06□□□□□ -1.76
PTPRD-204ENST00000397606 KIAA1109Q2LD37 5005 aa4.06□□□□□ -1.76
PTPRD-204ENST00000397606 SACSQ9NZJ4 4579 aa4.06□□□□□ -1.76
PTPRD-204ENST00000397606 DNAH7Q8WXX0 4024 aa4.06□□□□□ -1.76
PTPRD-204ENST00000397606 KRTAP3-1Q9BYR8 98 aa4.06□□□□□ -1.76
PTPRD-204ENST00000397606 RYR3Q15413 4870 aa4.04□□□□□ -1.76
PTPRD-204ENST00000397606 P0C880 135 aa4.03□□□□□ -1.76
PTPRD-204ENST00000397606 RYR1P21817 5038 aa4.02□□□□□ -1.77
PTPRD-204ENST00000397606 H0YAA0 97 aa4.01□□□□□ -1.77
PTPRD-204ENST00000397606 HYDINQ4G0P3 5121 aa3.97□□□□□ -1.77
PTPRD-204ENST00000397606 KRTAP17-1Q9BYP8 105 aa3.96□□□□□ -1.77
PTPRD-204ENST00000397606 LUZP6Q538Z0 58 aa3.96□□□□□ -1.78
PTPRD-204ENST00000397606 DNAH8Q96JB1 4490 aa3.95□□□□□ -1.78
PTPRD-204ENST00000397606 LYSTQ99698 3801 aa3.95□□□□□ -1.78
PTPRD-204ENST00000397606 APOBP04114 4563 aaKnown RBP3.94□□□□□ -1.78
PTPRD-204ENST00000397606 TNP1P09430 55 aa3.94□□□□□ -1.78
PTPRD-204ENST00000397606 BIRC6Q9NR09 4857 aa3.93□□□□□ -1.78
PTPRD-204ENST00000397606 PRAC1Q96KF2 57 aa3.93□□□□□ -1.78
PTPRD-204ENST00000397606 KMT2CQ8NEZ4 4911 aaKnown RBP3.92□□□□□ -1.78
PTPRD-204ENST00000397606 PRO2289Q9P1D8 64 aa3.92□□□□□ -1.78
PTPRD-204ENST00000397606 VPS13BQ7Z7G8 4022 aa3.91□□□□□ -1.78
PTPRD-204ENST00000397606 HECTD4Q9Y4D8 3996 aa3.9□□□□□ -1.79
PTPRD-204ENST00000397606 A6NN06 94 aa3.89□□□□□ -1.79
PTPRD-204ENST00000397606 KRTAP3-3Q9BYR6 98 aa3.86□□□□□ -1.79
PTPRD-204ENST00000397606 HERC2O95714 4834 aa3.86□□□□□ -1.79
PTPRD-204ENST00000397606 KRTAP10-6P60371 365 aaPredicted RBP3.84□□□□□ -1.79
PTPRD-204ENST00000397606 PKHD1P08F94 4074 aa3.84□□□□□ -1.79
PTPRD-204ENST00000397606 KRTAP4-1Q9BYQ7 146 aa3.83□□□□□ -1.8
PTPRD-204ENST00000397606 PKD1P98161 4303 aa3.83□□□□□ -1.8
PTPRD-204ENST00000397606 HSPG2P98160 4391 aa3.82□□□□□ -1.8
PTPRD-204ENST00000397606 LRP1Q07954 4544 aaKnown RBP3.82□□□□□ -1.8
PTPRD-204ENST00000397606 KRTAP25-1Q3LHN0 102 aa3.81□□□□□ -1.8
PTPRD-204ENST00000397606 PP632Q6XCG6 107 aa3.79□□□□□ -1.8
PTPRD-204ENST00000397606 KRTAP12-2P59991 146 aa3.78□□□□□ -1.8
PTPRD-204ENST00000397606 KRTAP3-2Q9BYR7 98 aa3.78□□□□□ -1.81
PTPRD-204ENST00000397606 KRTAP12-1P59990 96 aa3.77□□□□□ -1.81
PTPRD-204ENST00000397606 KRTAP13-4Q3LI77 160 aa3.76□□□□□ -1.81
PTPRD-204ENST00000397606 EPPK1P58107 5090 aaKnown RBP3.75□□□□□ -1.81
PTPRD-204ENST00000397606 FRAS1Q86XX4 4008 aa3.74□□□□□ -1.81
PTPRD-204ENST00000397606 MYCBP2O75592 4640 aa3.73□□□□□ -1.81
PTPRD-204ENST00000397606 MT1HP80294 61 aa3.72□□□□□ -1.81
PTPRD-204ENST00000397606 FAT3Q8TDW7 4589 aa3.69□□□□□ -1.82
PTPRD-204ENST00000397606 C10orf95Q9H7T3 257 aa3.68□□□□□ -1.82
PTPRD-204ENST00000397606 ABCA13Q86UQ4 5058 aa3.65□□□□□ -1.83
PTPRD-204ENST00000397606 LORP23490 312 aaPredicted RBP3.63□□□□□ -1.83
PTPRD-204ENST00000397606 MT2AP02795 61 aa3.61□□□□□ -1.83
PTPRD-204ENST00000397606 HERC1Q15751 4861 aa3.61□□□□□ -1.83
PTPRD-204ENST00000397606 KRTAP23-1A1A580 65 aa3.6□□□□□ -1.83
PTPRD-204ENST00000397606 NDUFAF8A1L188 74 aa3.6□□□□□ -1.83
PTPRD-204ENST00000397606 LRP2P98164 4655 aa3.59□□□□□ -1.83
PTPRD-204ENST00000397606 PCLOQ9Y6V0 5065 aa3.56□□□□□ -1.84
PTPRD-204ENST00000397606 MT1FP04733 61 aa3.55□□□□□ -1.84
PTPRD-204ENST00000397606 TNXBP22105 4242 aa3.55□□□□□ -1.84
PTPRD-204ENST00000397606 SPRR2GQ9BYE4 73 aa3.54□□□□□ -1.84
PTPRD-204ENST00000397606 PKHD1L1Q86WI1 4243 aa3.53□□□□□ -1.84
PTPRD-204ENST00000397606 LCE2CQ5TA81 110 aa3.5□□□□□ -1.85
PTPRD-204ENST00000397606 LCE2BO14633 110 aa3.5□□□□□ -1.85
PTPRD-204ENST00000397606 KRTAP10-12P60413 245 aa3.5□□□□□ -1.85
PTPRD-204ENST00000397606 LCE2AQ5TA79 106 aaPredicted RBP3.49□□□□□ -1.85
PTPRD-204ENST00000397606 LPAP08519 4548 aa3.48□□□□□ -1.85
PTPRD-204ENST00000397606 KRTAP19-2Q3LHN2 52 aa3.44□□□□□ -1.86
PTPRD-204ENST00000397606 KRTAP9-8Q9BYQ0 159 aa3.42□□□□□ -1.86
PTPRD-204ENST00000397606 KRTAP19-1Q8IUB9 90 aa3.4□□□□□ -1.87
PTPRD-204ENST00000397606 KRTAP19-8Q3LI54 63 aa3.39□□□□□ -1.87
PTPRD-204ENST00000397606 HMCN2Q8NDA2 5059 aa3.38□□□□□ -1.87
PTPRD-204ENST00000397606 KRTAP15-1Q3LI76 137 aa3.38□□□□□ -1.87
PTPRD-204ENST00000397606 KRTAP12-3P60328 96 aa3.35□□□□□ -1.87
PTPRD-204ENST00000397606 RNF213Q63HN8 5207 aa3.35□□□□□ -1.87
PTPRD-204ENST00000397606 LCE3AQ5TA76 89 aa3.35□□□□□ -1.87
PTPRD-204ENST00000397606 KRTAP8-1Q8IUC2 63 aa3.34□□□□□ -1.87
PTPRD-204ENST00000397606 KRTAP9-3Q9BYQ3 159 aa3.33□□□□□ -1.88
PTPRD-204ENST00000397606 MUC17Q685J3 4493 aa3.3□□□□□ -1.88
PTPRD-204ENST00000397606 FAT4Q6V0I7 4981 aa3.28□□□□□ -1.88
PTPRD-204ENST00000397606 MT1BP07438 61 aa3.28□□□□□ -1.88
PTPRD-204ENST00000397606 UBR4Q5T4S7 5183 aa3.28□□□□□ -1.88
PTPRD-204ENST00000397606 FLGP20930 4061 aaPredicted RBP3.28□□□□□ -1.89
PTPRD-204ENST00000397606 KRTAP10-5P60370 271 aa3.25□□□□□ -1.89
PTPRD-204ENST00000397606 MT1XP80297 61 aa3.22□□□□□ -1.89
PTPRD-204ENST00000397606 SPRR2FQ96RM1 72 aa3.17□□□□□ -1.9
PTPRD-204ENST00000397606 KRTAP10-7P60409 375 aaPredicted RBP3.16□□□□□ -1.9
PTPRD-204ENST00000397606 MUC2Q02817 5179 aa3.15□□□□□ -1.9
PTPRD-204ENST00000397606 CRCT1Q9UGL9 99 aa3.14□□□□□ -1.91
PTPRD-204ENST00000397606 KRTAP9-2Q9BYQ4 174 aa3.14□□□□□ -1.91
PTPRD-204ENST00000397606 KRTAP19-5Q3LI72 72 aa3.13□□□□□ -1.91
PTPRD-204ENST00000397606 KRTAP19-6Q3LI70 58 aa3.09□□□□□ -1.91
PTPRD-204ENST00000397606 KRTAP19-4Q3LI73 84 aa3.09□□□□□ -1.91
PTPRD-204ENST00000397606 INE1O15225 51 aa3.06□□□□□ -1.92
PTPRD-204ENST00000397606 FSIP2Q5CZC0 6907 aa3.04□□□□□ -1.92
PTPRD-204ENST00000397606 KRTAP4-8A0A0G2JLE6 195 aa3.02□□□□□ -1.93
PTPRD-204ENST00000397606 KRTAP4-8Q9BYQ9 185 aa3.02□□□□□ -1.93
PTPRD-204ENST00000397606 SPRR2EP22531 72 aa3□□□□□ -1.93
PTPRD-204ENST00000397606 SPRR2BP35325 72 aa3□□□□□ -1.93
PTPRD-204ENST00000397606 SPRR2AP35326 72 aa3□□□□□ -1.93
PTPRD-204ENST00000397606 LCE3CQ5T5A8 94 aa3□□□□□ -1.93
PTPRD-204ENST00000397606 KRTAP9-6A0A140TA67 174 aa2.97□□□□□ -1.93
PTPRD-204ENST00000397606 MT1GP13640 62 aa2.94□□□□□ -1.94
PTPRD-204ENST00000397606 SPRR2DP22532 72 aa2.91□□□□□ -1.94
PTPRD-204ENST00000397606 MT1EP04732 61 aa2.88□□□□□ -1.95
PTPRD-204ENST00000397606 KRTAP19-3Q7Z4W3 81 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms