RNA–Protein interactions for RNA: ENST00000394180.6

CLDND1-202, Transcript of claudin domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDND1, Length 2,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-202ENST00000394180 KRTAP3-1Q9BYR8 98 aa11.68□□□□□ -0.54
CLDND1-202ENST00000394180 RPL37P61927 97 aaKnown RBP11.67□□□□□ -0.54
CLDND1-202ENST00000394180 C20orf166-AS1Q96NR2 134 aa11.67□□□□□ -0.54
CLDND1-202ENST00000394180 RPS29P62273 56 aaKnown RBP11.66□□□□□ -0.54
CLDND1-202ENST00000394180 KRTAP15-1Q3LI76 137 aa11.66□□□□□ -0.54
CLDND1-202ENST00000394180 Q5VSD8 79 aa11.65□□□□□ -0.54
CLDND1-202ENST00000394180 KRTAP1-4P0C5Y4 121 aa11.62□□□□□ -0.55
CLDND1-202ENST00000394180 TPRXLQ17RH7 258 aa11.59□□□□□ -0.55
CLDND1-202ENST00000394180 PKHD1L1Q86WI1 4243 aa11.53□□□□□ -0.56
CLDND1-202ENST00000394180 NDUFAF8A1L188 74 aa11.53□□□□□ -0.56
CLDND1-202ENST00000394180 LRP1Q07954 4544 aaKnown RBP11.53□□□□□ -0.56
CLDND1-202ENST00000394180 BIRC6Q9NR09 4857 aa11.49□□□□□ -0.57
CLDND1-202ENST00000394180 FLG2Q5D862 2391 aaPredicted RBP11.48□□□□□ -0.57
CLDND1-202ENST00000394180 MYCBP2O75592 4640 aa11.48□□□□□ -0.57
CLDND1-202ENST00000394180 KRTAP4-5Q9BYR2 181 aa11.45□□□□□ -0.58
CLDND1-202ENST00000394180 KRTAP10-6P60371 365 aaPredicted RBP11.38□□□□□ -0.59
CLDND1-202ENST00000394180 FAT3Q8TDW7 4589 aa11.38□□□□□ -0.59
CLDND1-202ENST00000394180 TNXBP22105 4242 aa11.36□□□□□ -0.59
CLDND1-202ENST00000394180 HERC2O95714 4834 aa11.34□□□□□ -0.59
CLDND1-202ENST00000394180 ABCA13Q86UQ4 5058 aa11.31□□□□□ -0.6
CLDND1-202ENST00000394180 KRTAP13-4Q3LI77 160 aa11.27□□□□□ -0.61
CLDND1-202ENST00000394180 C10orf95Q9H7T3 257 aa11.24□□□□□ -0.61
CLDND1-202ENST00000394180 KRTAP10-8P60410 259 aa11.23□□□□□ -0.61
CLDND1-202ENST00000394180 A0A0A0MQY5 61 aa11.23□□□□□ -0.61
CLDND1-202ENST00000394180 KRTAP3-2Q9BYR7 98 aa11.22□□□□□ -0.61
CLDND1-202ENST00000394180 S4R3F8 94 aa11.2□□□□□ -0.62
CLDND1-202ENST00000394180 DMBT1Q9UGM3 2413 aaPredicted RBP11.18□□□□□ -0.62
CLDND1-202ENST00000394180 A0A0D9SG42 100 aa11.17□□□□□ -0.62
CLDND1-202ENST00000394180 MT1HL1P0DM35 61 aa11.17□□□□□ -0.62
CLDND1-202ENST00000394180 KRTAP3-3Q9BYR6 98 aa11.16□□□□□ -0.62
CLDND1-202ENST00000394180 C9orf92A6NGG3 77 aa11.14□□□□□ -0.63
CLDND1-202ENST00000394180 XP32Q5T750 250 aa11.12□□□□□ -0.63
CLDND1-202ENST00000394180 PCLOQ9Y6V0 5065 aa11.06□□□□□ -0.64
CLDND1-202ENST00000394180 KRTAP12-2P59991 146 aa11.01□□□□□ -0.65
CLDND1-202ENST00000394180 KRTAP12-1P59990 96 aa10.96□□□□□ -0.65
CLDND1-202ENST00000394180 J3QL48 77 aa10.93□□□□□ -0.66
CLDND1-202ENST00000394180 LUZP6Q538Z0 58 aa10.9□□□□□ -0.66
CLDND1-202ENST00000394180 M0QZ58 72 aa10.85□□□□□ -0.67
CLDND1-202ENST00000394180 HERC1Q15751 4861 aa10.79□□□□□ -0.68
CLDND1-202ENST00000394180 LPAP08519 4548 aa10.74□□□□□ -0.69
CLDND1-202ENST00000394180 PLAC4Q8WY50 150 aa10.7□□□□□ -0.7
CLDND1-202ENST00000394180 LRP2P98164 4655 aa10.59□□□□□ -0.71
CLDND1-202ENST00000394180 HMCN2Q8NDA2 5059 aa10.5□□□□□ -0.73
CLDND1-202ENST00000394180 PP632Q6XCG6 107 aa10.43□□□□□ -0.74
CLDND1-202ENST00000394180 SEC61BP60468 96 aaKnown RBP10.25□□□□□ -0.77
CLDND1-202ENST00000394180 MUC2Q02817 5179 aa10.23□□□□□ -0.77
CLDND1-202ENST00000394180 R4GN34 69 aa10.18□□□□□ -0.78
CLDND1-202ENST00000394180 UBR4Q5T4S7 5183 aa10.17□□□□□ -0.78
CLDND1-202ENST00000394180 MUC17Q685J3 4493 aa10.14□□□□□ -0.79
CLDND1-202ENST00000394180 KRTAP4-1Q9BYQ7 146 aa10.11□□□□□ -0.79
CLDND1-202ENST00000394180 RNF213Q63HN8 5207 aa10.04□□□□□ -0.8
CLDND1-202ENST00000394180 SPRR5A0A1B0GTR4 108 aa10□□□□□ -0.81
CLDND1-202ENST00000394180 KRTAP23-1A1A580 65 aa9.99□□□□□ -0.81
CLDND1-202ENST00000394180 CAMK2N1Q7Z7J9 78 aa9.95□□□□□ -0.82
CLDND1-202ENST00000394180 PRO2289Q9P1D8 64 aa9.8□□□□□ -0.84
CLDND1-202ENST00000394180 KRTAP19-2Q3LHN2 52 aa9.76□□□□□ -0.85
CLDND1-202ENST00000394180 FAT4Q6V0I7 4981 aa9.75□□□□□ -0.85
CLDND1-202ENST00000394180 LORP23490 312 aaPredicted RBP9.71□□□□□ -0.86
CLDND1-202ENST00000394180 FLGP20930 4061 aaPredicted RBP9.63□□□□□ -0.87
CLDND1-202ENST00000394180 TNP1P09430 55 aa9.63□□□□□ -0.87
CLDND1-202ENST00000394180 LCE2CQ5TA81 110 aa9.62□□□□□ -0.87
CLDND1-202ENST00000394180 INE1O15225 51 aa9.6□□□□□ -0.87
CLDND1-202ENST00000394180 MT1HP80294 61 aa9.43□□□□□ -0.9
CLDND1-202ENST00000394180 M0R2T5 61 aa9.34□□□□□ -0.91
CLDND1-202ENST00000394180 LCE2AQ5TA79 106 aaPredicted RBP9.17□□□□□ -0.94
CLDND1-202ENST00000394180 KRTAP9-8Q9BYQ0 159 aa9.05□□□□□ -0.96
CLDND1-202ENST00000394180 MT2AP02795 61 aa9.01□□□□□ -0.97
CLDND1-202ENST00000394180 MT1FP04733 61 aa8.98□□□□□ -0.97
CLDND1-202ENST00000394180 KRTAP10-10P60014 251 aa8.93□□□□□ -0.98
CLDND1-202ENST00000394180 LCE3AQ5TA76 89 aa8.85□□□□□ -0.99
CLDND1-202ENST00000394180 KRTAP8-1Q8IUC2 63 aa8.84□□□□□ -0.99
CLDND1-202ENST00000394180 SPRR2GQ9BYE4 73 aa8.79□□□□□ -1
CLDND1-202ENST00000394180 KRTAP19-1Q8IUB9 90 aa8.74□□□□□ -1.01
CLDND1-202ENST00000394180 KRTAP9-3Q9BYQ3 159 aa8.73□□□□□ -1.01
CLDND1-202ENST00000394180 LCE2BO14633 110 aa8.55□□□□□ -1.04
CLDND1-202ENST00000394180 USH2AO75445 5202 aa8.52□□□□□ -1.05
CLDND1-202ENST00000394180 KRTAP10-12P60413 245 aa8.52□□□□□ -1.05
CLDND1-202ENST00000394180 KRTAP12-3P60328 96 aa8.47□□□□□ -1.05
CLDND1-202ENST00000394180 KRTAP19-8Q3LI54 63 aa8.47□□□□□ -1.05
CLDND1-202ENST00000394180 FSIP2Q5CZC0 6907 aa8.47□□□□□ -1.05
CLDND1-202ENST00000394180 MT1BP07438 61 aa8.44□□□□□ -1.06
CLDND1-202ENST00000394180 LCE2DQ5TA82 110 aaPredicted RBP8.31□□□□□ -1.08
CLDND1-202ENST00000394180 KRTAP10-5P60370 271 aa8.29□□□□□ -1.08
CLDND1-202ENST00000394180 SSPOA2VEC9 5147 aa8.22□□□□□ -1.09
CLDND1-202ENST00000394180 KRTAP9-2Q9BYQ4 174 aa8.19□□□□□ -1.1
CLDND1-202ENST00000394180 MT1XP80297 61 aa8.14□□□□□ -1.11
CLDND1-202ENST00000394180 LCE3CQ5T5A8 94 aa8.06□□□□□ -1.12
CLDND1-202ENST00000394180 KRTAP19-6Q3LI70 58 aa7.98□□□□□ -1.13
CLDND1-202ENST00000394180 KRTAP2-3P0C7H8 128 aa7.97□□□□□ -1.13
CLDND1-202ENST00000394180 KRTAP2-4Q9BYR9 128 aa7.97□□□□□ -1.13
CLDND1-202ENST00000394180 KRTAP2-1Q9BYU5 128 aa7.97□□□□□ -1.13
CLDND1-202ENST00000394180 FCGBPQ9Y6R7 5405 aaPredicted RBP7.9□□□□□ -1.15
CLDND1-202ENST00000394180 KRTAP10-7P60409 375 aaPredicted RBP7.88□□□□□ -1.15
CLDND1-202ENST00000394180 CRCT1Q9UGL9 99 aa7.84□□□□□ -1.15
CLDND1-202ENST00000394180 KRTAP19-4Q3LI73 84 aa7.82□□□□□ -1.16
CLDND1-202ENST00000394180 KMT2DO14686 5537 aa7.8□□□□□ -1.16
CLDND1-202ENST00000394180 KRTAP19-5Q3LI72 72 aa7.74□□□□□ -1.17
CLDND1-202ENST00000394180 KRTAP9-6A8MVA2 160 aa7.68□□□□□ -1.18
CLDND1-202ENST00000394180 KRTAP4-8A0A0G2JLE6 195 aa7.62□□□□□ -1.19
CLDND1-202ENST00000394180 KRTAP4-8Q9BYQ9 185 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms