RNA–Protein interactions for RNA: ENST00000380071.7

RFC3-201, Transcript of replication factor C subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFC3, Length 2,402 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3-201ENST00000380071 A0A1B0GU33 70 aa6.35□□□□□ -1.39
RFC3-201ENST00000380071 LINC01554Q52M75 96 aa6.35□□□□□ -1.39
RFC3-201ENST00000380071 RYR3Q15413 4870 aa6.34□□□□□ -1.39
RFC3-201ENST00000380071 Q5VSD8 79 aa6.34□□□□□ -1.4
RFC3-201ENST00000380071 H1FX-AS1Q4G0G2 97 aa6.33□□□□□ -1.4
RFC3-201ENST00000380071 RYR1P21817 5038 aa6.32□□□□□ -1.4
RFC3-201ENST00000380071 DMBT1Q9UGM3 2413 aaPredicted RBP6.31□□□□□ -1.4
RFC3-201ENST00000380071 KRTAP17-1Q9BYP8 105 aa6.31□□□□□ -1.4
RFC3-201ENST00000380071 RPL37P61927 97 aaKnown RBP6.28□□□□□ -1.4
RFC3-201ENST00000380071 XP32Q5T750 250 aa6.27□□□□□ -1.41
RFC3-201ENST00000380071 KIAA1109Q2LD37 5005 aa6.24□□□□□ -1.41
RFC3-201ENST00000380071 LPAP08519 4548 aa6.23□□□□□ -1.41
RFC3-201ENST00000380071 KRTAP10-6P60371 365 aaPredicted RBP6.19□□□□□ -1.42
RFC3-201ENST00000380071 MT1HL1P0DM35 61 aa6.18□□□□□ -1.42
RFC3-201ENST00000380071 KRTAP25-1Q3LHN0 102 aa6.16□□□□□ -1.42
RFC3-201ENST00000380071 S4R3F8 94 aa6.15□□□□□ -1.42
RFC3-201ENST00000380071 LRP2P98164 4655 aa6.14□□□□□ -1.43
RFC3-201ENST00000380071 KRTAP13-4Q3LI77 160 aa6.14□□□□□ -1.43
RFC3-201ENST00000380071 EPPK1P58107 5090 aaKnown RBP6.11□□□□□ -1.43
RFC3-201ENST00000380071 CRIPTQ9P021 101 aa6.1□□□□□ -1.43
RFC3-201ENST00000380071 A0A0D9SG42 100 aa6.09□□□□□ -1.43
RFC3-201ENST00000380071 K7ERS5 55 aa6.09□□□□□ -1.43
RFC3-201ENST00000380071 P0C880 135 aa6.08□□□□□ -1.44
RFC3-201ENST00000380071 ABCA13Q86UQ4 5058 aa6.07□□□□□ -1.44
RFC3-201ENST00000380071 LOC100996750A0A140TA64 210 aa6.03□□□□□ -1.44
RFC3-201ENST00000380071 KRTAP4-6Q9BYQ5 205 aa6.03□□□□□ -1.44
RFC3-201ENST00000380071 H3BS24 57 aa6.01□□□□□ -1.45
RFC3-201ENST00000380071 ROMO1P60602 79 aa6.01□□□□□ -1.45
RFC3-201ENST00000380071 TPRXLQ17RH7 258 aa6□□□□□ -1.45
RFC3-201ENST00000380071 KRTAP4-5Q9BYR2 181 aa5.96□□□□□ -1.45
RFC3-201ENST00000380071 KRTAP12-2P59991 146 aa5.93□□□□□ -1.46
RFC3-201ENST00000380071 MUC17Q685J3 4493 aa5.88□□□□□ -1.47
RFC3-201ENST00000380071 KRTAP12-1P59990 96 aa5.87□□□□□ -1.47
RFC3-201ENST00000380071 SPINT4Q6UDR6 99 aa5.87□□□□□ -1.47
RFC3-201ENST00000380071 C10orf95Q9H7T3 257 aa5.87□□□□□ -1.47
RFC3-201ENST00000380071 M0QZ58 72 aa5.82□□□□□ -1.48
RFC3-201ENST00000380071 KRTAP4-1Q9BYQ7 146 aa5.79□□□□□ -1.48
RFC3-201ENST00000380071 SEC61BP60468 96 aaKnown RBP5.77□□□□□ -1.49
RFC3-201ENST00000380071 HERC2O95714 4834 aa5.75□□□□□ -1.49
RFC3-201ENST00000380071 LORP23490 312 aaPredicted RBP5.73□□□□□ -1.49
RFC3-201ENST00000380071 R4GN34 69 aa5.72□□□□□ -1.49
RFC3-201ENST00000380071 J3QL48 77 aa5.71□□□□□ -1.5
RFC3-201ENST00000380071 MUC2Q02817 5179 aa5.69□□□□□ -1.5
RFC3-201ENST00000380071 LCE2BO14633 110 aa5.68□□□□□ -1.5
RFC3-201ENST00000380071 KRTAP19-2Q3LHN2 52 aa5.66□□□□□ -1.5
RFC3-201ENST00000380071 KRTAP15-1Q3LI76 137 aa5.65□□□□□ -1.51
RFC3-201ENST00000380071 BIRC6Q9NR09 4857 aa5.55□□□□□ -1.52
RFC3-201ENST00000380071 NDUFAF8A1L188 74 aa5.54□□□□□ -1.52
RFC3-201ENST00000380071 FLGP20930 4061 aaPredicted RBP5.53□□□□□ -1.52
RFC3-201ENST00000380071 HERC1Q15751 4861 aa5.5□□□□□ -1.53
RFC3-201ENST00000380071 PCLOQ9Y6V0 5065 aa5.48□□□□□ -1.53
RFC3-201ENST00000380071 HMCN2Q8NDA2 5059 aa5.44□□□□□ -1.54
RFC3-201ENST00000380071 CAMK2N1Q7Z7J9 78 aa5.42□□□□□ -1.54
RFC3-201ENST00000380071 FAT4Q6V0I7 4981 aa5.41□□□□□ -1.54
RFC3-201ENST00000380071 LCE2AQ5TA79 106 aaPredicted RBP5.4□□□□□ -1.54
RFC3-201ENST00000380071 PLAC4Q8WY50 150 aa5.34□□□□□ -1.55
RFC3-201ENST00000380071 KRTAP4-8Q9BYQ9 185 aa5.33□□□□□ -1.56
RFC3-201ENST00000380071 LCE2CQ5TA81 110 aa5.33□□□□□ -1.56
RFC3-201ENST00000380071 PP632Q6XCG6 107 aa5.27□□□□□ -1.57
RFC3-201ENST00000380071 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.26□□□□□ -1.57
RFC3-201ENST00000380071 RNF213Q63HN8 5207 aa5.25□□□□□ -1.57
RFC3-201ENST00000380071 KRTAP9-2Q9BYQ4 174 aa5.24□□□□□ -1.57
RFC3-201ENST00000380071 UBR4Q5T4S7 5183 aa5.22□□□□□ -1.57
RFC3-201ENST00000380071 KRTAP9-6A0A140TA67 174 aa5.22□□□□□ -1.57
RFC3-201ENST00000380071 TNP1P09430 55 aa5.21□□□□□ -1.58
RFC3-201ENST00000380071 KRTAP19-1Q8IUB9 90 aa5.19□□□□□ -1.58
RFC3-201ENST00000380071 M0R2T5 61 aa5.18□□□□□ -1.58
RFC3-201ENST00000380071 SPRR2GQ9BYE4 73 aa5.18□□□□□ -1.58
RFC3-201ENST00000380071 MT1HP80294 61 aa5.17□□□□□ -1.58
RFC3-201ENST00000380071 KRTAP23-1A1A580 65 aa5.09□□□□□ -1.59
RFC3-201ENST00000380071 MT1FP04733 61 aa5.09□□□□□ -1.59
RFC3-201ENST00000380071 MT2AP02795 61 aa5.08□□□□□ -1.6
RFC3-201ENST00000380071 KRTAP10-10P60014 251 aa5.08□□□□□ -1.6
RFC3-201ENST00000380071 LUZP6Q538Z0 58 aa5.08□□□□□ -1.6
RFC3-201ENST00000380071 KRTAP9-8Q9BYQ0 159 aa5.06□□□□□ -1.6
RFC3-201ENST00000380071 LCE3BQ5TA77 95 aa5.05□□□□□ -1.6
RFC3-201ENST00000380071 KRTAP4-8A0A0G2JLE6 195 aa5.01□□□□□ -1.61
RFC3-201ENST00000380071 SPRR5A0A1B0GTR4 108 aa4.98□□□□□ -1.61
RFC3-201ENST00000380071 LCE3AQ5TA76 89 aa4.97□□□□□ -1.61
RFC3-201ENST00000380071 KRTAP9-9Q9BYP9 154 aa4.97□□□□□ -1.61
RFC3-201ENST00000380071 KRTAP9-4Q9BYQ2 154 aa4.97□□□□□ -1.61
RFC3-201ENST00000380071 KRTAP19-8Q3LI54 63 aa4.95□□□□□ -1.62
RFC3-201ENST00000380071 A0A0A0MQY5 61 aa4.94□□□□□ -1.62
RFC3-201ENST00000380071 MT1BP07438 61 aa4.92□□□□□ -1.62
RFC3-201ENST00000380071 KRTAP10-5P60370 271 aa4.89□□□□□ -1.63
RFC3-201ENST00000380071 MT1XP80297 61 aa4.88□□□□□ -1.63
RFC3-201ENST00000380071 KRTAP4-12Q9BQ66 201 aa4.87□□□□□ -1.63
RFC3-201ENST00000380071 KRTAP4-7Q9BYR0 210 aa4.87□□□□□ -1.63
RFC3-201ENST00000380071 KRTAP9-3Q9BYQ3 159 aa4.84□□□□□ -1.63
RFC3-201ENST00000380071 KRTAP8-1Q8IUC2 63 aa4.82□□□□□ -1.64
RFC3-201ENST00000380071 KRTAP10-7P60409 375 aaPredicted RBP4.77□□□□□ -1.65
RFC3-201ENST00000380071 KRTAP10-12P60413 245 aa4.75□□□□□ -1.65
RFC3-201ENST00000380071 KRTAP12-3P60328 96 aa4.72□□□□□ -1.65
RFC3-201ENST00000380071 LCE1DQ5T752 114 aa4.71□□□□□ -1.66
RFC3-201ENST00000380071 USH2AO75445 5202 aa4.7□□□□□ -1.66
RFC3-201ENST00000380071 KRTAP4-2Q9BYR5 136 aa4.66□□□□□ -1.66
RFC3-201ENST00000380071 KRTAP4-9Q9BYQ8 210 aa4.64□□□□□ -1.67
RFC3-201ENST00000380071 PRO2289Q9P1D8 64 aa4.64□□□□□ -1.67
RFC3-201ENST00000380071 KMT2DO14686 5537 aa4.63□□□□□ -1.67
RFC3-201ENST00000380071 KRTAP19-5Q3LI72 72 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms