RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 ABCA13Q86UQ4 5058 aa10.54□□□□□ -0.72
VSX1-202ENST00000376709 SPATA8Q6RVD6 105 aa10.52□□□□□ -0.72
VSX1-202ENST00000376709 MIR22HGQ0VDD5 57 aa10.51□□□□□ -0.73
VSX1-202ENST00000376709 KTN1-AS1Q86SY8 53 aa10.48□□□□□ -0.73
VSX1-202ENST00000376709 BIRC6Q9NR09 4857 aa10.4□□□□□ -0.74
VSX1-202ENST00000376709 TPRXLQ17RH7 258 aa10.39□□□□□ -0.75
VSX1-202ENST00000376709 HERC2O95714 4834 aa10.39□□□□□ -0.75
VSX1-202ENST00000376709 LPAP08519 4548 aa10.34□□□□□ -0.75
VSX1-202ENST00000376709 LRP2P98164 4655 aa10.34□□□□□ -0.75
VSX1-202ENST00000376709 A0A1B0GU33 70 aa10.29□□□□□ -0.76
VSX1-202ENST00000376709 H0YAA0 97 aa10.28□□□□□ -0.76
VSX1-202ENST00000376709 J3QL48 77 aa10.27□□□□□ -0.77
VSX1-202ENST00000376709 S4R3F8 94 aa10.27□□□□□ -0.77
VSX1-202ENST00000376709 H1FX-AS1Q4G0G2 97 aa10.26□□□□□ -0.77
VSX1-202ENST00000376709 KRTAP3-3Q9BYR6 98 aa10.26□□□□□ -0.77
VSX1-202ENST00000376709 RBM12B-AS1Q9P1G2 102 aa10.14□□□□□ -0.79
VSX1-202ENST00000376709 ADM2Q7Z4H4 148 aa10.14□□□□□ -0.79
VSX1-202ENST00000376709 PRAC1Q96KF2 57 aa10.12□□□□□ -0.79
VSX1-202ENST00000376709 KRTAP10-6P60371 365 aaPredicted RBP10.07□□□□□ -0.8
VSX1-202ENST00000376709 PCLOQ9Y6V0 5065 aa10.06□□□□□ -0.8
VSX1-202ENST00000376709 SEC61BP60468 96 aaKnown RBP10.03□□□□□ -0.8
VSX1-202ENST00000376709 KRTAP3-2Q9BYR7 98 aa10.02□□□□□ -0.81
VSX1-202ENST00000376709 CSAG1Q6PB30 78 aa9.96□□□□□ -0.82
VSX1-202ENST00000376709 P0C880 135 aa9.94□□□□□ -0.82
VSX1-202ENST00000376709 MUC17Q685J3 4493 aa9.93□□□□□ -0.82
VSX1-202ENST00000376709 KRTAP13-4Q3LI77 160 aa9.93□□□□□ -0.82
VSX1-202ENST00000376709 HERC1Q15751 4861 aa9.93□□□□□ -0.82
VSX1-202ENST00000376709 K7ERS5 55 aa9.92□□□□□ -0.82
VSX1-202ENST00000376709 KRTAP4-1Q9BYQ7 146 aa9.88□□□□□ -0.83
VSX1-202ENST00000376709 A0A0D9SG42 100 aa9.85□□□□□ -0.83
VSX1-202ENST00000376709 HMCN2Q8NDA2 5059 aa9.82□□□□□ -0.84
VSX1-202ENST00000376709 MUC2Q02817 5179 aa9.71□□□□□ -0.85
VSX1-202ENST00000376709 M0QZ58 72 aa9.66□□□□□ -0.86
VSX1-202ENST00000376709 LINC01554Q52M75 96 aa9.65□□□□□ -0.86
VSX1-202ENST00000376709 KRTAP19-2Q3LHN2 52 aa9.63□□□□□ -0.87
VSX1-202ENST00000376709 KRTAP25-1Q3LHN0 102 aa9.6□□□□□ -0.87
VSX1-202ENST00000376709 ROMO1P60602 79 aa9.59□□□□□ -0.87
VSX1-202ENST00000376709 KRTAP12-2P59991 146 aa9.58□□□□□ -0.88
VSX1-202ENST00000376709 CRIPTQ9P021 101 aa9.57□□□□□ -0.88
VSX1-202ENST00000376709 SPINT4Q6UDR6 99 aa9.56□□□□□ -0.88
VSX1-202ENST00000376709 KRTAP12-1P59990 96 aa9.54□□□□□ -0.88
VSX1-202ENST00000376709 R4GN34 69 aa9.53□□□□□ -0.88
VSX1-202ENST00000376709 FLGP20930 4061 aaPredicted RBP9.49□□□□□ -0.89
VSX1-202ENST00000376709 UBR4Q5T4S7 5183 aa9.41□□□□□ -0.9
VSX1-202ENST00000376709 LORP23490 312 aaPredicted RBP9.4□□□□□ -0.9
VSX1-202ENST00000376709 RNF213Q63HN8 5207 aa9.4□□□□□ -0.9
VSX1-202ENST00000376709 C10orf95Q9H7T3 257 aa9.29□□□□□ -0.92
VSX1-202ENST00000376709 LCE2CQ5TA81 110 aa9.26□□□□□ -0.93
VSX1-202ENST00000376709 FAT4Q6V0I7 4981 aa9.25□□□□□ -0.93
VSX1-202ENST00000376709 MT1HP80294 61 aa9.05□□□□□ -0.96
VSX1-202ENST00000376709 M0R2T5 61 aa9.03□□□□□ -0.96
VSX1-202ENST00000376709 CAMK2N1Q7Z7J9 78 aa9.01□□□□□ -0.97
VSX1-202ENST00000376709 H3BS24 57 aa8.96□□□□□ -0.98
VSX1-202ENST00000376709 SPRR2GQ9BYE4 73 aa8.8□□□□□ -1
VSX1-202ENST00000376709 MT2AP02795 61 aa8.78□□□□□ -1
VSX1-202ENST00000376709 MT1FP04733 61 aa8.76□□□□□ -1.01
VSX1-202ENST00000376709 KRTAP9-8Q9BYQ0 159 aa8.76□□□□□ -1.01
VSX1-202ENST00000376709 KRTAP19-1Q8IUB9 90 aa8.76□□□□□ -1.01
VSX1-202ENST00000376709 KRTAP10-10P60014 251 aa8.74□□□□□ -1.01
VSX1-202ENST00000376709 PLAC4Q8WY50 150 aa8.71□□□□□ -1.02
VSX1-202ENST00000376709 KRTAP15-1Q3LI76 137 aa8.69□□□□□ -1.02
VSX1-202ENST00000376709 PP632Q6XCG6 107 aa8.63□□□□□ -1.03
VSX1-202ENST00000376709 TNP1P09430 55 aa8.62□□□□□ -1.03
VSX1-202ENST00000376709 KRTAP19-8Q3LI54 63 aa8.45□□□□□ -1.06
VSX1-202ENST00000376709 KRTAP9-3Q9BYQ3 159 aa8.42□□□□□ -1.06
VSX1-202ENST00000376709 KRTAP23-1A1A580 65 aa8.41□□□□□ -1.06
VSX1-202ENST00000376709 LCE2AQ5TA79 106 aaPredicted RBP8.39□□□□□ -1.07
VSX1-202ENST00000376709 NDUFAF8A1L188 74 aa8.38□□□□□ -1.07
VSX1-202ENST00000376709 MT1BP07438 61 aa8.35□□□□□ -1.07
VSX1-202ENST00000376709 KRTAP10-5P60370 271 aa8.22□□□□□ -1.09
VSX1-202ENST00000376709 MT1XP80297 61 aa8.22□□□□□ -1.09
VSX1-202ENST00000376709 LCE3AQ5TA76 89 aa8.17□□□□□ -1.1
VSX1-202ENST00000376709 LCE2BO14633 110 aa8.17□□□□□ -1.1
VSX1-202ENST00000376709 USH2AO75445 5202 aa8.06□□□□□ -1.12
VSX1-202ENST00000376709 PRO2289Q9P1D8 64 aa8.05□□□□□ -1.12
VSX1-202ENST00000376709 KRTAP10-12P60413 245 aa8□□□□□ -1.13
VSX1-202ENST00000376709 LUZP6Q538Z0 58 aa7.97□□□□□ -1.13
VSX1-202ENST00000376709 KRTAP10-7P60409 375 aaPredicted RBP7.96□□□□□ -1.14
VSX1-202ENST00000376709 KRTAP8-1Q8IUC2 63 aa7.96□□□□□ -1.14
VSX1-202ENST00000376709 SPRR5A0A1B0GTR4 108 aa7.91□□□□□ -1.14
VSX1-202ENST00000376709 KRTAP12-3P60328 96 aa7.81□□□□□ -1.16
VSX1-202ENST00000376709 SSPOA2VEC9 5147 aa7.71□□□□□ -1.17
VSX1-202ENST00000376709 KMT2DO14686 5537 aa7.65□□□□□ -1.18
VSX1-202ENST00000376709 KRTAP19-5Q3LI72 72 aa7.59□□□□□ -1.2
VSX1-202ENST00000376709 FSIP2Q5CZC0 6907 aa7.54□□□□□ -1.2
VSX1-202ENST00000376709 KRTAP4-8A0A0G2JLE6 195 aa7.53□□□□□ -1.2
VSX1-202ENST00000376709 KRTAP4-8Q9BYQ9 185 aa7.53□□□□□ -1.2
VSX1-202ENST00000376709 A0A0A0MQY5 61 aa7.52□□□□□ -1.21
VSX1-202ENST00000376709 KRTAP19-6Q3LI70 58 aa7.49□□□□□ -1.21
VSX1-202ENST00000376709 LCE2DQ5TA82 110 aaPredicted RBP7.43□□□□□ -1.22
VSX1-202ENST00000376709 LCE3CQ5T5A8 94 aa7.33□□□□□ -1.24
VSX1-202ENST00000376709 KRTAP19-7Q3SYF9 63 aa7.32□□□□□ -1.24
VSX1-202ENST00000376709 FCGBPQ9Y6R7 5405 aaPredicted RBP7.29□□□□□ -1.24
VSX1-202ENST00000376709 MT1EP04732 61 aa7.15□□□□□ -1.27
VSX1-202ENST00000376709 MT1LQ93083 61 aa7.09□□□□□ -1.27
VSX1-202ENST00000376709 KRTAP19-4Q3LI73 84 aa7.07□□□□□ -1.28
VSX1-202ENST00000376709 KRTAP4-7Q9BYR0 210 aa7.05□□□□□ -1.28
VSX1-202ENST00000376709 KRTAP9-2Q9BYQ4 174 aa7.02□□□□□ -1.29
VSX1-202ENST00000376709 KRTAP9-6A8MVA2 160 aa7.01□□□□□ -1.29
VSX1-202ENST00000376709 MUC12Q9UKN1 5478 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms