RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 XP32Q5T750 250 aa7.38□□□□□ -1.23
CD48-201ENST00000368045 CSAG1Q6PB30 78 aa7.36□□□□□ -1.23
CD48-201ENST00000368045 K7ERS5 55 aa7.36□□□□□ -1.23
CD48-201ENST00000368045 HSPG2P98160 4391 aa7.31□□□□□ -1.24
CD48-201ENST00000368045 S4R3F8 94 aa7.31□□□□□ -1.24
CD48-201ENST00000368045 KMT2CQ8NEZ4 4911 aaKnown RBP7.28□□□□□ -1.24
CD48-201ENST00000368045 KRTAP10-6P60371 365 aaPredicted RBP7.28□□□□□ -1.24
CD48-201ENST00000368045 LRP1Q07954 4544 aaKnown RBP7.28□□□□□ -1.24
CD48-201ENST00000368045 J3QL48 77 aa7.26□□□□□ -1.25
CD48-201ENST00000368045 MT1HL1P0DM35 61 aa7.25□□□□□ -1.25
CD48-201ENST00000368045 RYR1P21817 5038 aa7.25□□□□□ -1.25
CD48-201ENST00000368045 KRTAP25-1Q3LHN0 102 aa7.23□□□□□ -1.25
CD48-201ENST00000368045 DMBT1Q9UGM3 2413 aaPredicted RBP7.19□□□□□ -1.26
CD48-201ENST00000368045 KRTAP17-1Q9BYP8 105 aa7.17□□□□□ -1.26
CD48-201ENST00000368045 KRTAP13-4Q3LI77 160 aa7.16□□□□□ -1.26
CD48-201ENST00000368045 LCE2BO14633 110 aa7.15□□□□□ -1.26
CD48-201ENST00000368045 TPRXLQ17RH7 258 aa7.15□□□□□ -1.26
CD48-201ENST00000368045 ROMO1P60602 79 aa7.15□□□□□ -1.27
CD48-201ENST00000368045 P0C880 135 aa7.1□□□□□ -1.27
CD48-201ENST00000368045 A0A0D9SG42 100 aa7.09□□□□□ -1.27
CD48-201ENST00000368045 MYCBP2O75592 4640 aa7.08□□□□□ -1.28
CD48-201ENST00000368045 RYR3Q15413 4870 aa7.05□□□□□ -1.28
CD48-201ENST00000368045 KIAA1109Q2LD37 5005 aa7.02□□□□□ -1.29
CD48-201ENST00000368045 M0QZ58 72 aa7□□□□□ -1.29
CD48-201ENST00000368045 CRIPTQ9P021 101 aa6.97□□□□□ -1.29
CD48-201ENST00000368045 KRTAP12-2P59991 146 aa6.95□□□□□ -1.3
CD48-201ENST00000368045 KRTAP12-1P59990 96 aa6.93□□□□□ -1.3
CD48-201ENST00000368045 SEC61BP60468 96 aaKnown RBP6.9□□□□□ -1.31
CD48-201ENST00000368045 LRP2P98164 4655 aa6.87□□□□□ -1.31
CD48-201ENST00000368045 SPINT4Q6UDR6 99 aa6.87□□□□□ -1.31
CD48-201ENST00000368045 LPAP08519 4548 aa6.83□□□□□ -1.32
CD48-201ENST00000368045 KRTAP4-5Q9BYR2 181 aa6.8□□□□□ -1.32
CD48-201ENST00000368045 EPPK1P58107 5090 aaKnown RBP6.79□□□□□ -1.32
CD48-201ENST00000368045 C10orf95Q9H7T3 257 aa6.77□□□□□ -1.33
CD48-201ENST00000368045 LCE2CQ5TA81 110 aa6.76□□□□□ -1.33
CD48-201ENST00000368045 R4GN34 69 aa6.76□□□□□ -1.33
CD48-201ENST00000368045 LCE2AQ5TA79 106 aaPredicted RBP6.72□□□□□ -1.33
CD48-201ENST00000368045 ABCA13Q86UQ4 5058 aa6.72□□□□□ -1.33
CD48-201ENST00000368045 KRTAP4-1Q9BYQ7 146 aa6.68□□□□□ -1.34
CD48-201ENST00000368045 MUC17Q685J3 4493 aa6.67□□□□□ -1.34
CD48-201ENST00000368045 H3BS24 57 aa6.64□□□□□ -1.35
CD48-201ENST00000368045 KRTAP19-2Q3LHN2 52 aa6.62□□□□□ -1.35
CD48-201ENST00000368045 LORP23490 312 aaPredicted RBP6.59□□□□□ -1.35
CD48-201ENST00000368045 KRTAP15-1Q3LI76 137 aa6.58□□□□□ -1.36
CD48-201ENST00000368045 HERC2O95714 4834 aa6.5□□□□□ -1.37
CD48-201ENST00000368045 LOC100996750A0A140TA64 210 aa6.49□□□□□ -1.37
CD48-201ENST00000368045 KRTAP4-6Q9BYQ5 205 aa6.49□□□□□ -1.37
CD48-201ENST00000368045 BIRC6Q9NR09 4857 aa6.42□□□□□ -1.38
CD48-201ENST00000368045 FLGP20930 4061 aaPredicted RBP6.42□□□□□ -1.38
CD48-201ENST00000368045 CAMK2N1Q7Z7J9 78 aa6.41□□□□□ -1.38
CD48-201ENST00000368045 PP632Q6XCG6 107 aa6.41□□□□□ -1.38
CD48-201ENST00000368045 NDUFAF8A1L188 74 aa6.35□□□□□ -1.39
CD48-201ENST00000368045 HERC1Q15751 4861 aa6.32□□□□□ -1.4
CD48-201ENST00000368045 PLAC4Q8WY50 150 aa6.31□□□□□ -1.4
CD48-201ENST00000368045 KRTAP23-1A1A580 65 aa6.24□□□□□ -1.41
CD48-201ENST00000368045 TNP1P09430 55 aa6.21□□□□□ -1.41
CD48-201ENST00000368045 HMCN2Q8NDA2 5059 aa6.2□□□□□ -1.42
CD48-201ENST00000368045 MUC2Q02817 5179 aa6.17□□□□□ -1.42
CD48-201ENST00000368045 SPRR2GQ9BYE4 73 aa6.17□□□□□ -1.42
CD48-201ENST00000368045 A0A0A0MQY5 61 aa6.13□□□□□ -1.43
CD48-201ENST00000368045 PCLOQ9Y6V0 5065 aa6.09□□□□□ -1.43
CD48-201ENST00000368045 KRTAP19-1Q8IUB9 90 aa6.08□□□□□ -1.44
CD48-201ENST00000368045 M0R2T5 61 aa6.05□□□□□ -1.44
CD48-201ENST00000368045 MT1HP80294 61 aa6.04□□□□□ -1.44
CD48-201ENST00000368045 LUZP6Q538Z0 58 aa6.04□□□□□ -1.44
CD48-201ENST00000368045 MT2AP02795 61 aa5.96□□□□□ -1.46
CD48-201ENST00000368045 MT1FP04733 61 aa5.94□□□□□ -1.46
CD48-201ENST00000368045 KRTAP10-10P60014 251 aa5.94□□□□□ -1.46
CD48-201ENST00000368045 RNF213Q63HN8 5207 aa5.93□□□□□ -1.46
CD48-201ENST00000368045 SPRR5A0A1B0GTR4 108 aa5.93□□□□□ -1.46
CD48-201ENST00000368045 KRTAP9-8Q9BYQ0 159 aa5.91□□□□□ -1.46
CD48-201ENST00000368045 KRTAP19-8Q3LI54 63 aa5.9□□□□□ -1.46
CD48-201ENST00000368045 FAT4Q6V0I7 4981 aa5.9□□□□□ -1.47
CD48-201ENST00000368045 LCE3AQ5TA76 89 aa5.83□□□□□ -1.48
CD48-201ENST00000368045 UBR4Q5T4S7 5183 aa5.8□□□□□ -1.48
CD48-201ENST00000368045 KRTAP4-8Q9BYQ9 185 aa5.79□□□□□ -1.48
CD48-201ENST00000368045 MT1BP07438 61 aa5.77□□□□□ -1.49
CD48-201ENST00000368045 KRTAP8-1Q8IUC2 63 aa5.75□□□□□ -1.49
CD48-201ENST00000368045 KRTAP10-5P60370 271 aa5.73□□□□□ -1.49
CD48-201ENST00000368045 MT1XP80297 61 aa5.72□□□□□ -1.49
CD48-201ENST00000368045 KRTAP9-3Q9BYQ3 159 aa5.67□□□□□ -1.5
CD48-201ENST00000368045 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.67□□□□□ -1.5
CD48-201ENST00000368045 KRTAP9-2Q9BYQ4 174 aa5.67□□□□□ -1.5
CD48-201ENST00000368045 KRTAP10-12P60413 245 aa5.64□□□□□ -1.51
CD48-201ENST00000368045 KRTAP9-6A0A140TA67 174 aa5.63□□□□□ -1.51
CD48-201ENST00000368045 PRO2289Q9P1D8 64 aa5.6□□□□□ -1.51
CD48-201ENST00000368045 KRTAP12-3P60328 96 aa5.58□□□□□ -1.52
CD48-201ENST00000368045 KRTAP10-7P60409 375 aaPredicted RBP5.52□□□□□ -1.53
CD48-201ENST00000368045 LCE3BQ5TA77 95 aa5.49□□□□□ -1.53
CD48-201ENST00000368045 KRTAP4-8A0A0G2JLE6 195 aa5.4□□□□□ -1.54
CD48-201ENST00000368045 KRTAP4-12Q9BQ66 201 aa5.38□□□□□ -1.55
CD48-201ENST00000368045 KRTAP9-9Q9BYP9 154 aa5.37□□□□□ -1.55
CD48-201ENST00000368045 KRTAP9-4Q9BYQ2 154 aa5.37□□□□□ -1.55
CD48-201ENST00000368045 KRTAP19-5Q3LI72 72 aa5.32□□□□□ -1.56
CD48-201ENST00000368045 LCE3CQ5T5A8 94 aa5.27□□□□□ -1.57
CD48-201ENST00000368045 INE1O15225 51 aa5.26□□□□□ -1.57
CD48-201ENST00000368045 KRTAP4-7Q9BYR0 210 aa5.24□□□□□ -1.57
CD48-201ENST00000368045 KRTAP19-4Q3LI73 84 aa5.16□□□□□ -1.58
CD48-201ENST00000368045 LCE1DQ5T752 114 aa5.14□□□□□ -1.59
CD48-201ENST00000368045 USH2AO75445 5202 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms