RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 HRNRQ86YZ3 2850 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-202ENST00000357409 LCE3AQ5TA76 89 aa3.27□□□□□ -1.89
VPS13A-202ENST00000357409 LPAP08519 4548 aa3.27□□□□□ -1.89
VPS13A-202ENST00000357409 KRTAP10-6P60371 365 aaPredicted RBP3.26□□□□□ -1.89
VPS13A-202ENST00000357409 KRTAP17-1Q9BYP8 105 aa3.25□□□□□ -1.89
VPS13A-202ENST00000357409 KRTAP10-12P60413 245 aa3.25□□□□□ -1.89
VPS13A-202ENST00000357409 FAT3Q8TDW7 4589 aa3.24□□□□□ -1.89
VPS13A-202ENST00000357409 DYNC1H1Q14204 4646 aaKnown RBP3.24□□□□□ -1.89
VPS13A-202ENST00000357409 APOBP04114 4563 aaKnown RBP3.23□□□□□ -1.89
VPS13A-202ENST00000357409 PDZD2O15018 2839 aa3.21□□□□□ -1.9
VPS13A-202ENST00000357409 KRTAP8-1Q8IUC2 63 aa3.19□□□□□ -1.9
VPS13A-202ENST00000357409 MXRA5Q9NR99 2828 aa3.19□□□□□ -1.9
VPS13A-202ENST00000357409 KRTAP3-3Q9BYR6 98 aa3.19□□□□□ -1.9
VPS13A-202ENST00000357409 TGP01266 2768 aa3.18□□□□□ -1.9
VPS13A-202ENST00000357409 OTOGQ6ZRI0 2925 aa3.15□□□□□ -1.91
VPS13A-202ENST00000357409 KRTAP12-3P60328 96 aa3.14□□□□□ -1.91
VPS13A-202ENST00000357409 KRTAP4-1Q9BYQ7 146 aa3.13□□□□□ -1.91
VPS13A-202ENST00000357409 KRTAP3-2Q9BYR7 98 aa3.11□□□□□ -1.91
VPS13A-202ENST00000357409 MEGF8Q7Z7M0 2845 aa3.11□□□□□ -1.91
VPS13A-202ENST00000357409 RYR1P21817 5038 aa3.1□□□□□ -1.91
VPS13A-202ENST00000357409 LRP1Q07954 4544 aaKnown RBP3.1□□□□□ -1.91
VPS13A-202ENST00000357409 KMT2AQ03164 3969 aa3.1□□□□□ -1.91
VPS13A-202ENST00000357409 FBN3Q75N90 2809 aa3.09□□□□□ -1.92
VPS13A-202ENST00000357409 FAT2Q9NYQ8 4349 aa3.08□□□□□ -1.92
VPS13A-202ENST00000357409 STARD9Q9P2P6 4700 aa3.08□□□□□ -1.92
VPS13A-202ENST00000357409 MYCBP2O75592 4640 aa3.08□□□□□ -1.92
VPS13A-202ENST00000357409 DYNC2H1Q8NCM8 4307 aaKnown RBP3.07□□□□□ -1.92
VPS13A-202ENST00000357409 ANK2Q01484 3957 aa3.07□□□□□ -1.92
VPS13A-202ENST00000357409 SPRR2FQ96RM1 72 aa3.07□□□□□ -1.92
VPS13A-202ENST00000357409 KRTAP10-4P60372 401 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-202ENST00000357409 COL7A1Q02388 2944 aa3.04□□□□□ -1.92
VPS13A-202ENST00000357409 MT1HP80294 61 aa3.03□□□□□ -1.92
VPS13A-202ENST00000357409 DNAH6Q9C0G6 4158 aa3.03□□□□□ -1.93
VPS13A-202ENST00000357409 PRKDCP78527 4128 aaKnown RBP3.02□□□□□ -1.93
VPS13A-202ENST00000357409 ALMS1Q8TCU4 4167 aa3.01□□□□□ -1.93
VPS13A-202ENST00000357409 TENM3Q9P273 2699 aa3.01□□□□□ -1.93
VPS13A-202ENST00000357409 LYSTQ99698 3801 aa3□□□□□ -1.93
VPS13A-202ENST00000357409 PKD1P98161 4303 aa2.99□□□□□ -1.93
VPS13A-202ENST00000357409 SRRM2Q9UQ35 2752 aaKnown RBP2.98□□□□□ -1.93
VPS13A-202ENST00000357409 RYR3Q15413 4870 aa2.97□□□□□ -1.93
VPS13A-202ENST00000357409 VPS13BQ7Z7G8 4022 aa2.96□□□□□ -1.94
VPS13A-202ENST00000357409 HSPG2P98160 4391 aa2.94□□□□□ -1.94
VPS13A-202ENST00000357409 HYDINQ4G0P3 5121 aa2.93□□□□□ -1.94
VPS13A-202ENST00000357409 CMYA5Q8N3K9 4069 aa2.93□□□□□ -1.94
VPS13A-202ENST00000357409 SPRR2EP22531 72 aa2.92□□□□□ -1.94
VPS13A-202ENST00000357409 SPRR2BP35325 72 aa2.92□□□□□ -1.94
VPS13A-202ENST00000357409 SPRR2AP35326 72 aa2.92□□□□□ -1.94
VPS13A-202ENST00000357409 OBSCNQ5VST9 7968 aa2.91□□□□□ -1.94
VPS13A-202ENST00000357409 MT2AP02795 61 aa2.91□□□□□ -1.94
VPS13A-202ENST00000357409 MT1FP04733 61 aa2.91□□□□□ -1.94
VPS13A-202ENST00000357409 KRTAP19-5Q3LI72 72 aa2.9□□□□□ -1.94
VPS13A-202ENST00000357409 KRTAP10-7P60409 375 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-202ENST00000357409 FSIP2Q5CZC0 6907 aa2.89□□□□□ -1.95
VPS13A-202ENST00000357409 KRTAP4-8A0A0G2JLE6 195 aa2.87□□□□□ -1.95
VPS13A-202ENST00000357409 KRTAP4-8Q9BYQ9 185 aa2.87□□□□□ -1.95
VPS13A-202ENST00000357409 LCE3BQ5TA77 95 aa2.85□□□□□ -1.95
VPS13A-202ENST00000357409 SYNE2Q8WXH0 6885 aaKnown RBP2.83□□□□□ -1.96
VPS13A-202ENST00000357409 INE1O15225 51 aa2.82□□□□□ -1.96
VPS13A-202ENST00000357409 MT1GP13640 62 aa2.81□□□□□ -1.96
VPS13A-202ENST00000357409 DNAH3Q8TD57 4116 aa2.81□□□□□ -1.96
VPS13A-202ENST00000357409 LRP2P98164 4655 aa2.79□□□□□ -1.96
VPS13A-202ENST00000357409 PKHD1L1Q86WI1 4243 aa2.78□□□□□ -1.97
VPS13A-202ENST00000357409 EPPK1P58107 5090 aaKnown RBP2.77□□□□□ -1.97
VPS13A-202ENST00000357409 SPRR2DP22532 72 aa2.77□□□□□ -1.97
VPS13A-202ENST00000357409 DSTQ03001 7570 aaKnown RBP2.75□□□□□ -1.97
VPS13A-202ENST00000357409 HERC2O95714 4834 aa2.73□□□□□ -1.97
VPS13A-202ENST00000357409 BIRC6Q9NR09 4857 aa2.73□□□□□ -1.97
VPS13A-202ENST00000357409 SPRR5A0A1B0GTR4 108 aa2.72□□□□□ -1.97
VPS13A-202ENST00000357409 KRTAP4-7Q9BYR0 210 aa2.72□□□□□ -1.97
VPS13A-202ENST00000357409 DNAH7Q8WXX0 4024 aa2.71□□□□□ -1.98
VPS13A-202ENST00000357409 PKHD1P08F94 4074 aa2.71□□□□□ -1.98
VPS13A-202ENST00000357409 TNXBP22105 4242 aa2.7□□□□□ -1.98
VPS13A-202ENST00000357409 KMT2CQ8NEZ4 4911 aaKnown RBP2.7□□□□□ -1.98
VPS13A-202ENST00000357409 KIAA1109Q2LD37 5005 aa2.69□□□□□ -1.98
VPS13A-202ENST00000357409 LCE3CQ5T5A8 94 aa2.69□□□□□ -1.98
VPS13A-202ENST00000357409 LCE2BO14633 110 aa2.68□□□□□ -1.98
VPS13A-202ENST00000357409 SYNE1Q8NF91 8797 aaKnown RBP2.68□□□□□ -1.98
VPS13A-202ENST00000357409 MT4P47944 62 aa2.68□□□□□ -1.98
VPS13A-202ENST00000357409 RYR2Q92736 4967 aa2.66□□□□□ -1.98
VPS13A-202ENST00000357409 KRTAP19-1Q8IUB9 90 aa2.66□□□□□ -1.98
VPS13A-202ENST00000357409 SPRR2GQ9BYE4 73 aa2.66□□□□□ -1.98
VPS13A-202ENST00000357409 KRTAP9-2Q9BYQ4 174 aa2.64□□□□□ -1.99
VPS13A-202ENST00000357409 ABCA13Q86UQ4 5058 aa2.63□□□□□ -1.99
VPS13A-202ENST00000357409 LCE2DQ5TA82 110 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-202ENST00000357409 KRTAP4-3Q9BYR4 195 aa2.58□□□□□ -2
VPS13A-202ENST00000357409 LOC100996750A0A140TA64 210 aa2.57□□□□□ -2
VPS13A-202ENST00000357409 KRTAP12-4P60329 112 aa2.57□□□□□ -2
VPS13A-202ENST00000357409 LCE2CQ5TA81 110 aa2.57□□□□□ -2
VPS13A-202ENST00000357409 KRTAP9-8Q9BYQ0 159 aa2.56□□□□□ -2
VPS13A-202ENST00000357409 MUC17Q685J3 4493 aa2.55□□□□□ -2
VPS13A-202ENST00000357409 LCE1BQ5T7P3 118 aa2.55□□□□□ -2
VPS13A-202ENST00000357409 MT1BP07438 61 aa2.54□□□□□ -2
VPS13A-202ENST00000357409 MT1XP80297 61 aa2.54□□□□□ -2
VPS13A-202ENST00000357409 KRTAP9-6A0A140TA67 174 aa2.53□□□□□ -2
VPS13A-202ENST00000357409 KRTAP23-1A1A580 65 aa2.53□□□□□ -2
VPS13A-202ENST00000357409 HERC1Q15751 4861 aa2.53□□□□□ -2
VPS13A-202ENST00000357409 UBR4Q5T4S7 5183 aa2.5□□□□□ -2.01
VPS13A-202ENST00000357409 FAT4Q6V0I7 4981 aa2.5□□□□□ -2.01
VPS13A-202ENST00000357409 MACF1Q9UPN3 7388 aaKnown RBP2.49□□□□□ -2.01
VPS13A-202ENST00000357409 PCLOQ9Y6V0 5065 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms