RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 A0A1B0GU33 70 aa11.53□□□□□ -0.56
NKX2-1-201ENST00000354822 H1FX-AS1Q4G0G2 97 aa11.49□□□□□ -0.57
NKX2-1-201ENST00000354822 EPPK1P58107 5090 aaKnown RBP11.47□□□□□ -0.57
NKX2-1-201ENST00000354822 H0YAA0 97 aa11.46□□□□□ -0.57
NKX2-1-201ENST00000354822 RBM12B-AS1Q9P1G2 102 aa11.43□□□□□ -0.58
NKX2-1-201ENST00000354822 KRTAP4-5Q9BYR2 181 aa11.36□□□□□ -0.59
NKX2-1-201ENST00000354822 KRTAP3-3Q9BYR6 98 aa11.36□□□□□ -0.59
NKX2-1-201ENST00000354822 MYCBP2O75592 4640 aa11.35□□□□□ -0.59
NKX2-1-201ENST00000354822 S4R3F8 94 aa11.34□□□□□ -0.59
NKX2-1-201ENST00000354822 TPRXLQ17RH7 258 aa11.33□□□□□ -0.6
NKX2-1-201ENST00000354822 PRAC1Q96KF2 57 aa11.27□□□□□ -0.61
NKX2-1-201ENST00000354822 ADM2Q7Z4H4 148 aa11.26□□□□□ -0.61
NKX2-1-201ENST00000354822 KRTAP10-6P60371 365 aaPredicted RBP11.21□□□□□ -0.61
NKX2-1-201ENST00000354822 K7ERS5 55 aa11.18□□□□□ -0.62
NKX2-1-201ENST00000354822 KRTAP3-2Q9BYR7 98 aa11.15□□□□□ -0.62
NKX2-1-201ENST00000354822 J3QL48 77 aa11.06□□□□□ -0.64
NKX2-1-201ENST00000354822 LRP2P98164 4655 aa11.05□□□□□ -0.64
NKX2-1-201ENST00000354822 CSAG1Q6PB30 78 aa11.04□□□□□ -0.64
NKX2-1-201ENST00000354822 KRTAP13-4Q3LI77 160 aa11□□□□□ -0.65
NKX2-1-201ENST00000354822 LPAP08519 4548 aa10.99□□□□□ -0.65
NKX2-1-201ENST00000354822 P0C880 135 aa10.98□□□□□ -0.65
NKX2-1-201ENST00000354822 ABCA13Q86UQ4 5058 aa10.94□□□□□ -0.66
NKX2-1-201ENST00000354822 SEC61BP60468 96 aaKnown RBP10.94□□□□□ -0.66
NKX2-1-201ENST00000354822 LINC01554Q52M75 96 aa10.94□□□□□ -0.66
NKX2-1-201ENST00000354822 BIRC6Q9NR09 4857 aa10.91□□□□□ -0.66
NKX2-1-201ENST00000354822 A0A0D9SG42 100 aa10.9□□□□□ -0.66
NKX2-1-201ENST00000354822 HERC2O95714 4834 aa10.9□□□□□ -0.66
NKX2-1-201ENST00000354822 ROMO1P60602 79 aa10.83□□□□□ -0.68
NKX2-1-201ENST00000354822 KRTAP25-1Q3LHN0 102 aa10.83□□□□□ -0.68
NKX2-1-201ENST00000354822 M0QZ58 72 aa10.8□□□□□ -0.68
NKX2-1-201ENST00000354822 MUC17Q685J3 4493 aa10.67□□□□□ -0.7
NKX2-1-201ENST00000354822 KRTAP12-2P59991 146 aa10.66□□□□□ -0.7
NKX2-1-201ENST00000354822 KRTAP4-1Q9BYQ7 146 aa10.65□□□□□ -0.7
NKX2-1-201ENST00000354822 KRTAP12-1P59990 96 aa10.64□□□□□ -0.71
NKX2-1-201ENST00000354822 SPINT4Q6UDR6 99 aa10.6□□□□□ -0.71
NKX2-1-201ENST00000354822 CRIPTQ9P021 101 aa10.58□□□□□ -0.72
NKX2-1-201ENST00000354822 R4GN34 69 aa10.51□□□□□ -0.73
NKX2-1-201ENST00000354822 KRTAP19-2Q3LHN2 52 aa10.46□□□□□ -0.74
NKX2-1-201ENST00000354822 PCLOQ9Y6V0 5065 aa10.31□□□□□ -0.76
NKX2-1-201ENST00000354822 LORP23490 312 aaPredicted RBP10.3□□□□□ -0.76
NKX2-1-201ENST00000354822 C10orf95Q9H7T3 257 aa10.28□□□□□ -0.76
NKX2-1-201ENST00000354822 HERC1Q15751 4861 aa10.25□□□□□ -0.77
NKX2-1-201ENST00000354822 HMCN2Q8NDA2 5059 aa10.24□□□□□ -0.77
NKX2-1-201ENST00000354822 H3BS24 57 aa10.22□□□□□ -0.77
NKX2-1-201ENST00000354822 FLGP20930 4061 aaPredicted RBP10.18□□□□□ -0.78
NKX2-1-201ENST00000354822 MUC2Q02817 5179 aa10.06□□□□□ -0.8
NKX2-1-201ENST00000354822 LCE2CQ5TA81 110 aa9.99□□□□□ -0.81
NKX2-1-201ENST00000354822 CAMK2N1Q7Z7J9 78 aa9.95□□□□□ -0.82
NKX2-1-201ENST00000354822 KRTAP15-1Q3LI76 137 aa9.8□□□□□ -0.84
NKX2-1-201ENST00000354822 MT1HP80294 61 aa9.75□□□□□ -0.85
NKX2-1-201ENST00000354822 PP632Q6XCG6 107 aa9.75□□□□□ -0.85
NKX2-1-201ENST00000354822 RNF213Q63HN8 5207 aa9.74□□□□□ -0.85
NKX2-1-201ENST00000354822 M0R2T5 61 aa9.72□□□□□ -0.85
NKX2-1-201ENST00000354822 SPRR2GQ9BYE4 73 aa9.68□□□□□ -0.86
NKX2-1-201ENST00000354822 UBR4Q5T4S7 5183 aa9.63□□□□□ -0.87
NKX2-1-201ENST00000354822 FAT4Q6V0I7 4981 aa9.6□□□□□ -0.87
NKX2-1-201ENST00000354822 TNP1P09430 55 aa9.6□□□□□ -0.87
NKX2-1-201ENST00000354822 PLAC4Q8WY50 150 aa9.58□□□□□ -0.88
NKX2-1-201ENST00000354822 KRTAP19-1Q8IUB9 90 aa9.57□□□□□ -0.88
NKX2-1-201ENST00000354822 KRTAP23-1A1A580 65 aa9.54□□□□□ -0.88
NKX2-1-201ENST00000354822 MT2AP02795 61 aa9.49□□□□□ -0.89
NKX2-1-201ENST00000354822 KRTAP9-8Q9BYQ0 159 aa9.47□□□□□ -0.89
NKX2-1-201ENST00000354822 MT1FP04733 61 aa9.46□□□□□ -0.9
NKX2-1-201ENST00000354822 KRTAP10-10P60014 251 aa9.46□□□□□ -0.9
NKX2-1-201ENST00000354822 NDUFAF8A1L188 74 aa9.41□□□□□ -0.9
NKX2-1-201ENST00000354822 KRTAP19-8Q3LI54 63 aa9.29□□□□□ -0.92
NKX2-1-201ENST00000354822 A0A0A0MQY5 61 aa9.2□□□□□ -0.94
NKX2-1-201ENST00000354822 KRTAP9-3Q9BYQ3 159 aa9.1□□□□□ -0.95
NKX2-1-201ENST00000354822 MT1BP07438 61 aa9.09□□□□□ -0.95
NKX2-1-201ENST00000354822 LUZP6Q538Z0 58 aa9.08□□□□□ -0.96
NKX2-1-201ENST00000354822 LCE3AQ5TA76 89 aa9.01□□□□□ -0.97
NKX2-1-201ENST00000354822 LCE2AQ5TA79 106 aaPredicted RBP9□□□□□ -0.97
NKX2-1-201ENST00000354822 KRTAP10-5P60370 271 aa9□□□□□ -0.97
NKX2-1-201ENST00000354822 MT1XP80297 61 aa8.98□□□□□ -0.97
NKX2-1-201ENST00000354822 SPRR5A0A1B0GTR4 108 aa8.93□□□□□ -0.98
NKX2-1-201ENST00000354822 KRTAP8-1Q8IUC2 63 aa8.88□□□□□ -0.99
NKX2-1-201ENST00000354822 PRO2289Q9P1D8 64 aa8.83□□□□□ -1
NKX2-1-201ENST00000354822 KRTAP10-12P60413 245 aa8.78□□□□□ -1
NKX2-1-201ENST00000354822 LCE2BO14633 110 aa8.78□□□□□ -1
NKX2-1-201ENST00000354822 KRTAP10-7P60409 375 aaPredicted RBP8.68□□□□□ -1.02
NKX2-1-201ENST00000354822 KRTAP12-3P60328 96 aa8.65□□□□□ -1.03
NKX2-1-201ENST00000354822 USH2AO75445 5202 aa8.33□□□□□ -1.08
NKX2-1-201ENST00000354822 KRTAP19-5Q3LI72 72 aa8.31□□□□□ -1.08
NKX2-1-201ENST00000354822 KRTAP4-8A0A0G2JLE6 195 aa8.15□□□□□ -1.11
NKX2-1-201ENST00000354822 KRTAP4-8Q9BYQ9 185 aa8.15□□□□□ -1.11
NKX2-1-201ENST00000354822 LCE3CQ5T5A8 94 aa8.14□□□□□ -1.11
NKX2-1-201ENST00000354822 KRTAP19-6Q3LI70 58 aa8.1□□□□□ -1.11
NKX2-1-201ENST00000354822 SSPOA2VEC9 5147 aa8.06□□□□□ -1.12
NKX2-1-201ENST00000354822 KMT2DO14686 5537 aa8.04□□□□□ -1.12
NKX2-1-201ENST00000354822 KRTAP19-7Q3SYF9 63 aa8.01□□□□□ -1.13
NKX2-1-201ENST00000354822 KRTAP19-4Q3LI73 84 aa8□□□□□ -1.13
NKX2-1-201ENST00000354822 LCE2DQ5TA82 110 aaPredicted RBP8□□□□□ -1.13
NKX2-1-201ENST00000354822 MT1EP04732 61 aa7.81□□□□□ -1.16
NKX2-1-201ENST00000354822 MT1LQ93083 61 aa7.77□□□□□ -1.17
NKX2-1-201ENST00000354822 INE1O15225 51 aa7.76□□□□□ -1.17
NKX2-1-201ENST00000354822 KRTAP9-6A8MVA2 160 aa7.71□□□□□ -1.17
NKX2-1-201ENST00000354822 KRTAP4-7Q9BYR0 210 aa7.66□□□□□ -1.18
NKX2-1-201ENST00000354822 FSIP2Q5CZC0 6907 aa7.65□□□□□ -1.19
NKX2-1-201ENST00000354822 FCGBPQ9Y6R7 5405 aaPredicted RBP7.55□□□□□ -1.2
NKX2-1-201ENST00000354822 KRTAP2-3P0C7H8 128 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms