RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 COL5A1-AS1Q5SY13 56 aa6.27□□□□□ -1.41
PRPF40A-201ENST00000354363 IMUPQ9GZP8 106 aa6.27□□□□□ -1.41
PRPF40A-201ENST00000354363 KMT2DO14686 5537 aa6.26□□□□□ -1.41
PRPF40A-201ENST00000354363 MDN1Q9NU22 5596 aa6.23□□□□□ -1.41
PRPF40A-201ENST00000354363 KRTAP4-8Q9BYQ9 185 aa6.23□□□□□ -1.41
PRPF40A-201ENST00000354363 TRAV22A0A0B4J277 110 aa6.22□□□□□ -1.41
PRPF40A-201ENST00000354363 LOC101927531A0A1B0GV80 90 aa6.22□□□□□ -1.41
PRPF40A-201ENST00000354363 H0YAA0 97 aa6.17□□□□□ -1.42
PRPF40A-201ENST00000354363 ETDBQ3ZM63 59 aa6.17□□□□□ -1.42
PRPF40A-201ENST00000354363 NDUFC1O43677 76 aa6.17□□□□□ -1.42
PRPF40A-201ENST00000354363 GTF2H5Q6ZYL4 71 aa6.17□□□□□ -1.42
PRPF40A-201ENST00000354363 F8W1H4 67 aa6.16□□□□□ -1.42
PRPF40A-201ENST00000354363 H0Y9P7 68 aa6.1□□□□□ -1.43
PRPF40A-201ENST00000354363 UQCRQO14949 82 aa6.1□□□□□ -1.43
PRPF40A-201ENST00000354363 KRTAP2-3P0C7H8 128 aa6.1□□□□□ -1.43
PRPF40A-201ENST00000354363 ADM2Q7Z4H4 148 aa6.1□□□□□ -1.43
PRPF40A-201ENST00000354363 KRTAP2-4Q9BYR9 128 aa6.1□□□□□ -1.43
PRPF40A-201ENST00000354363 A8MUN3 132 aa6.1□□□□□ -1.43
PRPF40A-201ENST00000354363 SPRR2FQ96RM1 72 aa6.1□□□□□ -1.43
PRPF40A-201ENST00000354363 ATOX1O00244 68 aa6.09□□□□□ -1.43
PRPF40A-201ENST00000354363 MT1XP80297 61 aa6.09□□□□□ -1.43
PRPF40A-201ENST00000354363 PRO2289Q9P1D8 64 aa6.08□□□□□ -1.44
PRPF40A-201ENST00000354363 ACYP1P07311 99 aa6.07□□□□□ -1.44
PRPF40A-201ENST00000354363 SPRR2EP22531 72 aa6.06□□□□□ -1.44
PRPF40A-201ENST00000354363 SPRR2BP35325 72 aa6.06□□□□□ -1.44
PRPF40A-201ENST00000354363 SPRR2AP35326 72 aa6.06□□□□□ -1.44
PRPF40A-201ENST00000354363 HIST1H4AP62805 103 aaKnown RBP6.05□□□□□ -1.44
PRPF40A-201ENST00000354363 ATP5EP2Q5VTU8 51 aa6.05□□□□□ -1.44
PRPF40A-201ENST00000354363 PLAC4Q8WY50 150 aa6.03□□□□□ -1.44
PRPF40A-201ENST00000354363 FAM240AA0A1B0GVK7 77 aa6□□□□□ -1.45
PRPF40A-201ENST00000354363 KRTAP8-1Q8IUC2 63 aa6□□□□□ -1.45
PRPF40A-201ENST00000354363 KRTAP4-12Q9BQ66 201 aa5.99□□□□□ -1.45
PRPF40A-201ENST00000354363 LINC00208Q96KT6 92 aa5.99□□□□□ -1.45
PRPF40A-201ENST00000354363 KRTAP12-2P59991 146 aa5.97□□□□□ -1.45
PRPF40A-201ENST00000354363 R4GN34 69 aa5.96□□□□□ -1.45
PRPF40A-201ENST00000354363 LCE1AQ5T7P2 110 aa5.96□□□□□ -1.46
PRPF40A-201ENST00000354363 P0C880 135 aa5.95□□□□□ -1.46
PRPF40A-201ENST00000354363 PCP4L1A6NKN8 68 aa5.93□□□□□ -1.46
PRPF40A-201ENST00000354363 LCE3BQ5TA77 95 aa5.92□□□□□ -1.46
PRPF40A-201ENST00000354363 M0QZ58 72 aa5.91□□□□□ -1.46
PRPF40A-201ENST00000354363 C20orf197Q8N268 126 aa5.91□□□□□ -1.46
PRPF40A-201ENST00000354363 MP68P56378 58 aa5.9□□□□□ -1.46
PRPF40A-201ENST00000354363 KRTAP2-2Q9BYT5 123 aa5.9□□□□□ -1.46
PRPF40A-201ENST00000354363 KRTAP2-1Q9BYU5 128 aa5.9□□□□□ -1.46
PRPF40A-201ENST00000354363 OCR1Q9BZK8 76 aa5.9□□□□□ -1.46
PRPF40A-201ENST00000354363 KRTAP4-8A0A0G2JLE6 195 aa5.89□□□□□ -1.47
PRPF40A-201ENST00000354363 LINC00643Q86TS7 51 aa5.89□□□□□ -1.47
PRPF40A-201ENST00000354363 SPRR2DP22532 72 aa5.86□□□□□ -1.47
PRPF40A-201ENST00000354363 LINC01554Q52M75 96 aa5.83□□□□□ -1.48
PRPF40A-201ENST00000354363 DMAC1Q96GE9 116 aa5.83□□□□□ -1.48
PRPF40A-201ENST00000354363 KRTAP9-9Q9BYP9 154 aa5.82□□□□□ -1.48
PRPF40A-201ENST00000354363 KRTAP9-4Q9BYQ2 154 aa5.82□□□□□ -1.48
PRPF40A-201ENST00000354363 KRTAP10-7P60409 375 aaPredicted RBP5.81□□□□□ -1.48
PRPF40A-201ENST00000354363 H3BPC8 53 aa5.8□□□□□ -1.48
PRPF40A-201ENST00000354363 KRTAP10-12P60413 245 aa5.77□□□□□ -1.48
PRPF40A-201ENST00000354363 TRAV7A0A075B6U4 112 aa5.69□□□□□ -1.5
PRPF40A-201ENST00000354363 MT-ATP8P03928 68 aa5.66□□□□□ -1.5
PRPF40A-201ENST00000354363 SCGB1A1P11684 91 aa5.66□□□□□ -1.5
PRPF40A-201ENST00000354363 ACYP2P14621 99 aa5.64□□□□□ -1.51
PRPF40A-201ENST00000354363 SPTSSBQ8NFR3 76 aa5.6□□□□□ -1.51
PRPF40A-201ENST00000354363 A0A1B0GV90 55 aa5.59□□□□□ -1.51
PRPF40A-201ENST00000354363 J3QR89 54 aa5.56□□□□□ -1.52
PRPF40A-201ENST00000354363 LCE1DQ5T752 114 aa5.55□□□□□ -1.52
PRPF40A-201ENST00000354363 CHKB-CPT1BH3BT56 60 aa5.52□□□□□ -1.53
PRPF40A-201ENST00000354363 H3BS24 57 aa5.52□□□□□ -1.53
PRPF40A-201ENST00000354363 KRTAP4-7Q9BYR0 210 aa5.49□□□□□ -1.53
PRPF40A-201ENST00000354363 KRTAP13-4Q3LI77 160 aa5.48□□□□□ -1.53
PRPF40A-201ENST00000354363 PCP4P48539 62 aa5.45□□□□□ -1.54
PRPF40A-201ENST00000354363 LCE4AQ5TA78 99 aa5.45□□□□□ -1.54
PRPF40A-201ENST00000354363 SMIM20Q8N5G0 67 aa5.45□□□□□ -1.54
PRPF40A-201ENST00000354363 KRTAP19-7Q3SYF9 63 aa5.45□□□□□ -1.54
PRPF40A-201ENST00000354363 LCE5AQ5TCM9 118 aa5.45□□□□□ -1.54
PRPF40A-201ENST00000354363 CAMK2N1Q7Z7J9 78 aa5.44□□□□□ -1.54
PRPF40A-201ENST00000354363 SVIPQ8NHG7 77 aa5.43□□□□□ -1.54
PRPF40A-201ENST00000354363 KRTAP19-4Q3LI73 84 aa5.42□□□□□ -1.54
PRPF40A-201ENST00000354363 MT1EP04732 61 aa5.41□□□□□ -1.54
PRPF40A-201ENST00000354363 KRTAP19-3Q7Z4W3 81 aa5.4□□□□□ -1.55
PRPF40A-201ENST00000354363 SNURFQ9Y675 71 aa5.4□□□□□ -1.55
PRPF40A-201ENST00000354363 DSTQ03001 7570 aaKnown RBP5.4□□□□□ -1.55
PRPF40A-201ENST00000354363 KRTAP4-9Q9BYQ8 210 aa5.39□□□□□ -1.55
PRPF40A-201ENST00000354363 SPANXA2-OT1Q8N9U9 137 aa5.36□□□□□ -1.55
PRPF40A-201ENST00000354363 GPR98Q8WXG9 6306 aa5.35□□□□□ -1.55
PRPF40A-201ENST00000354363 CYSTM1Q9H1C7 97 aa5.28□□□□□ -1.56
PRPF40A-201ENST00000354363 A0A0D9SG42 100 aa5.27□□□□□ -1.57
PRPF40A-201ENST00000354363 KRTAP4-2Q9BYR5 136 aa5.26□□□□□ -1.57
PRPF40A-201ENST00000354363 KRTAP19-5Q3LI72 72 aa5.25□□□□□ -1.57
PRPF40A-201ENST00000354363 K7ERU9 68 aa5.24□□□□□ -1.57
PRPF40A-201ENST00000354363 MT1GP13640 62 aa5.24□□□□□ -1.57
PRPF40A-201ENST00000354363 COA5Q86WW8 74 aa5.23□□□□□ -1.57
PRPF40A-201ENST00000354363 SPATA8Q6RVD6 105 aa5.22□□□□□ -1.57
PRPF40A-201ENST00000354363 SPINT4Q6UDR6 99 aa5.21□□□□□ -1.58
PRPF40A-201ENST00000354363 SERP1Q9Y6X1 66 aa5.21□□□□□ -1.58
PRPF40A-201ENST00000354363 SEC61GP60059 68 aa5.2□□□□□ -1.58
PRPF40A-201ENST00000354363 SERP2Q8N6R1 65 aa5.2□□□□□ -1.58
PRPF40A-201ENST00000354363 KRTAP4-11Q9BYQ6 195 aa5.2□□□□□ -1.58
PRPF40A-201ENST00000354363 PP632Q6XCG6 107 aa5.19□□□□□ -1.58
PRPF40A-201ENST00000354363 KRTAP12-1P59990 96 aa5.17□□□□□ -1.58
PRPF40A-201ENST00000354363 MT1MQ8N339 61 aa5.16□□□□□ -1.58
PRPF40A-201ENST00000354363 A0A1B0GU33 70 aa5.15□□□□□ -1.59
PRPF40A-201ENST00000354363 MT4P47944 62 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms