RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 XP32Q5T750 250 aa4.22□□□□□ -1.73
ZNF540-202ENST00000343599 LUZP6Q538Z0 58 aa4.22□□□□□ -1.73
ZNF540-202ENST00000343599 FAM168BA1KXE4 195 aa4.21□□□□□ -1.74
ZNF540-202ENST00000343599 SMR3BP02814 79 aaPredicted RBP4.21□□□□□ -1.74
ZNF540-202ENST00000343599 LINC00483Q53H64 154 aa4.2□□□□□ -1.74
ZNF540-202ENST00000343599 DMAC1Q96GE9 116 aa4.19□□□□□ -1.74
ZNF540-202ENST00000343599 SRRM2Q9UQ35 2752 aaKnown RBP4.19□□□□□ -1.74
ZNF540-202ENST00000343599 KRTAP3-1Q9BYR8 98 aa4.18□□□□□ -1.74
ZNF540-202ENST00000343599 A0A096LNI7 61 aa4.16□□□□□ -1.74
ZNF540-202ENST00000343599 A8MUU9 505 aa4.16□□□□□ -1.74
ZNF540-202ENST00000343599 FAT4Q6V0I7 4981 aa4.16□□□□□ -1.74
ZNF540-202ENST00000343599 KRTAP7-1Q8IUC3 87 aa4.15□□□□□ -1.75
ZNF540-202ENST00000343599 SPINK1P00995 79 aa4.14□□□□□ -1.75
ZNF540-202ENST00000343599 SSBP3-AS1Q7Z2R9 100 aa4.14□□□□□ -1.75
ZNF540-202ENST00000343599 LRP1Q07954 4544 aaKnown RBP4.14□□□□□ -1.75
ZNF540-202ENST00000343599 KRTAP13-3Q3SY46 172 aa4.14□□□□□ -1.75
ZNF540-202ENST00000343599 Q96NJ1 140 aa4.13□□□□□ -1.75
ZNF540-202ENST00000343599 SPRR1BP22528 89 aa4.13□□□□□ -1.75
ZNF540-202ENST00000343599 CRCT1Q9UGL9 99 aa4.12□□□□□ -1.75
ZNF540-202ENST00000343599 LINC00304Q8N9R0 145 aa4.11□□□□□ -1.75
ZNF540-202ENST00000343599 MRPL34Q9BQ48 92 aaKnown RBP4.11□□□□□ -1.75
ZNF540-202ENST00000343599 A0A1B0GVX0 72 aa4.09□□□□□ -1.75
ZNF540-202ENST00000343599 C20orf166-AS1Q96NR2 134 aa4.08□□□□□ -1.76
ZNF540-202ENST00000343599 Q5W150 140 aa4.07□□□□□ -1.76
ZNF540-202ENST00000343599 RNF213Q63HN8 5207 aa4.06□□□□□ -1.76
ZNF540-202ENST00000343599 DMBT1Q9UGM3 2413 aaPredicted RBP4.05□□□□□ -1.76
ZNF540-202ENST00000343599 NDUFAF8A1L188 74 aa4.05□□□□□ -1.76
ZNF540-202ENST00000343599 PRLHP81277 87 aa4.05□□□□□ -1.76
ZNF540-202ENST00000343599 KRTAP15-1Q3LI76 137 aa4.04□□□□□ -1.76
ZNF540-202ENST00000343599 KRTAP19-2Q3LHN2 52 aa4.03□□□□□ -1.76
ZNF540-202ENST00000343599 UBR4Q5T4S7 5183 aa4.03□□□□□ -1.76
ZNF540-202ENST00000343599 H0YAA0 97 aa4.02□□□□□ -1.77
ZNF540-202ENST00000343599 TYMSOSQ8TAI1 123 aa4.01□□□□□ -1.77
ZNF540-202ENST00000343599 KRTAP11-1Q8IUC1 163 aa4.01□□□□□ -1.77
ZNF540-202ENST00000343599 IGKV2-30P06310 120 aa3.98□□□□□ -1.77
ZNF540-202ENST00000343599 KRTAP13-2Q52LG2 175 aa3.98□□□□□ -1.77
ZNF540-202ENST00000343599 SPINT4Q6UDR6 99 aa3.98□□□□□ -1.77
ZNF540-202ENST00000343599 LRP2P98164 4655 aa3.96□□□□□ -1.77
ZNF540-202ENST00000343599 ANAPC11Q9NYG5 84 aa3.95□□□□□ -1.78
ZNF540-202ENST00000343599 CRIPTQ9P021 101 aa3.94□□□□□ -1.78
ZNF540-202ENST00000343599 KRTAP10-6P60371 365 aaPredicted RBP3.94□□□□□ -1.78
ZNF540-202ENST00000343599 K7ERS5 55 aa3.93□□□□□ -1.78
ZNF540-202ENST00000343599 IGKV2D-30A0A075B6S6 120 aa3.93□□□□□ -1.78
ZNF540-202ENST00000343599 MT1HP80294 61 aa3.92□□□□□ -1.78
ZNF540-202ENST00000343599 FLG2Q5D862 2391 aaPredicted RBP3.91□□□□□ -1.78
ZNF540-202ENST00000343599 A0A1B0GU33 70 aa3.9□□□□□ -1.79
ZNF540-202ENST00000343599 CAMK2N1Q7Z7J9 78 aa3.9□□□□□ -1.79
ZNF540-202ENST00000343599 RPL37P61927 97 aaKnown RBP3.89□□□□□ -1.79
ZNF540-202ENST00000343599 H1FX-AS1Q4G0G2 97 aa3.89□□□□□ -1.79
ZNF540-202ENST00000343599 KRTAP6-3Q3LI67 103 aa3.88□□□□□ -1.79
ZNF540-202ENST00000343599 FLGP20930 4061 aaPredicted RBP3.87□□□□□ -1.79
ZNF540-202ENST00000343599 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.87□□□□□ -1.79
ZNF540-202ENST00000343599 KRTAP19-6Q3LI70 58 aa3.85□□□□□ -1.79
ZNF540-202ENST00000343599 SSPOA2VEC9 5147 aa3.84□□□□□ -1.8
ZNF540-202ENST00000343599 KRTAP9-7A8MTY7 169 aa3.83□□□□□ -1.8
ZNF540-202ENST00000343599 KRTAP4-1Q9BYQ7 146 aa3.76□□□□□ -1.81
ZNF540-202ENST00000343599 C10orf95Q9H7T3 257 aa3.76□□□□□ -1.81
ZNF540-202ENST00000343599 COX6B2Q6YFQ2 88 aa3.75□□□□□ -1.81
ZNF540-202ENST00000343599 KRTAP9-8Q9BYQ0 159 aa3.73□□□□□ -1.81
ZNF540-202ENST00000343599 KRTAP9-3Q9BYQ3 159 aa3.68□□□□□ -1.82
ZNF540-202ENST00000343599 KRTAP5-9P26371 169 aa3.64□□□□□ -1.83
ZNF540-202ENST00000343599 KRTAP13-4Q3LI77 160 aa3.62□□□□□ -1.83
ZNF540-202ENST00000343599 LPAP08519 4548 aa3.61□□□□□ -1.83
ZNF540-202ENST00000343599 S4R3F8 94 aa3.6□□□□□ -1.83
ZNF540-202ENST00000343599 R4GN34 69 aa3.59□□□□□ -1.83
ZNF540-202ENST00000343599 KRTAP19-1Q8IUB9 90 aa3.58□□□□□ -1.84
ZNF540-202ENST00000343599 A0A0D9SG42 100 aa3.57□□□□□ -1.84
ZNF540-202ENST00000343599 MT2AP02795 61 aa3.57□□□□□ -1.84
ZNF540-202ENST00000343599 PLAC4Q8WY50 150 aa3.57□□□□□ -1.84
ZNF540-202ENST00000343599 KRTAP12-2P59991 146 aa3.55□□□□□ -1.84
ZNF540-202ENST00000343599 MUC2Q02817 5179 aa3.53□□□□□ -1.84
ZNF540-202ENST00000343599 KRTAP19-8Q3LI54 63 aa3.53□□□□□ -1.84
ZNF540-202ENST00000343599 KRTAP12-1P59990 96 aa3.5□□□□□ -1.85
ZNF540-202ENST00000343599 KRTAP2-3P0C7H8 128 aa3.48□□□□□ -1.85
ZNF540-202ENST00000343599 KRTAP2-4Q9BYR9 128 aa3.48□□□□□ -1.85
ZNF540-202ENST00000343599 KRTAP20-1Q3LI63 56 aa3.47□□□□□ -1.85
ZNF540-202ENST00000343599 PRO2289Q9P1D8 64 aa3.46□□□□□ -1.86
ZNF540-202ENST00000343599 LCE1AQ5T7P2 110 aa3.45□□□□□ -1.86
ZNF540-202ENST00000343599 MT1FP04733 61 aa3.44□□□□□ -1.86
ZNF540-202ENST00000343599 SPRR2GQ9BYE4 73 aa3.43□□□□□ -1.86
ZNF540-202ENST00000343599 LCE5AQ5TCM9 118 aa3.41□□□□□ -1.86
ZNF540-202ENST00000343599 KRTAP10-5P60370 271 aa3.41□□□□□ -1.86
ZNF540-202ENST00000343599 USH2AO75445 5202 aa3.4□□□□□ -1.86
ZNF540-202ENST00000343599 M0R2T5 61 aa3.4□□□□□ -1.87
ZNF540-202ENST00000343599 KRTAP9-4Q9BYQ2 154 aa3.4□□□□□ -1.87
ZNF540-202ENST00000343599 M0QZ58 72 aa3.35□□□□□ -1.87
ZNF540-202ENST00000343599 NEBP20929 6669 aa3.35□□□□□ -1.87
ZNF540-202ENST00000343599 LOC100996750A0A140TA64 210 aa3.35□□□□□ -1.87
ZNF540-202ENST00000343599 KRTAP4-6Q9BYQ5 205 aa3.35□□□□□ -1.87
ZNF540-202ENST00000343599 LCE4AQ5TA78 99 aa3.34□□□□□ -1.87
ZNF540-202ENST00000343599 SPRR5A0A1B0GTR4 108 aa3.33□□□□□ -1.88
ZNF540-202ENST00000343599 PP632Q6XCG6 107 aa3.33□□□□□ -1.88
ZNF540-202ENST00000343599 KRTAP10-10P60014 251 aa3.32□□□□□ -1.88
ZNF540-202ENST00000343599 KRTAP9-9Q9BYP9 154 aa3.32□□□□□ -1.88
ZNF540-202ENST00000343599 KRTAP2-2Q9BYT5 123 aa3.32□□□□□ -1.88
ZNF540-202ENST00000343599 KRTAP2-1Q9BYU5 128 aa3.32□□□□□ -1.88
ZNF540-202ENST00000343599 C9orf92A6NGG3 77 aa3.32□□□□□ -1.88
ZNF540-202ENST00000343599 INE1O15225 51 aa3.31□□□□□ -1.88
ZNF540-202ENST00000343599 MT1BP07438 61 aa3.23□□□□□ -1.89
ZNF540-202ENST00000343599 FCGBPQ9Y6R7 5405 aaPredicted RBP3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms