RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 FAT2Q9NYQ8 4349 aa4.94□□□□□ -1.62
PTCHD4-201ENST00000339488 LRP1BQ9NZR2 4599 aa4.93□□□□□ -1.62
PTCHD4-201ENST00000339488 XP32Q5T750 250 aa4.93□□□□□ -1.62
PTCHD4-201ENST00000339488 PLAC4Q8WY50 150 aa4.93□□□□□ -1.62
PTCHD4-201ENST00000339488 PKHD1P08F94 4074 aa4.92□□□□□ -1.62
PTCHD4-201ENST00000339488 KRTAP12-1P59990 96 aa4.9□□□□□ -1.63
PTCHD4-201ENST00000339488 KRTAP3-3Q9BYR6 98 aa4.88□□□□□ -1.63
PTCHD4-201ENST00000339488 PKD1P98161 4303 aa4.88□□□□□ -1.63
PTCHD4-201ENST00000339488 DNAH5Q8TE73 4624 aa4.87□□□□□ -1.63
PTCHD4-201ENST00000339488 VPS13BQ7Z7G8 4022 aa4.85□□□□□ -1.63
PTCHD4-201ENST00000339488 KRTAP1-4P0C5Y4 121 aa4.83□□□□□ -1.64
PTCHD4-201ENST00000339488 KRTAP10-8P60410 259 aa4.83□□□□□ -1.64
PTCHD4-201ENST00000339488 EPPK1P58107 5090 aaKnown RBP4.81□□□□□ -1.64
PTCHD4-201ENST00000339488 DYNC1H1Q14204 4646 aaKnown RBP4.79□□□□□ -1.64
PTCHD4-201ENST00000339488 KRTAP10-2P60368 255 aa4.78□□□□□ -1.64
PTCHD4-201ENST00000339488 APOBP04114 4563 aaKnown RBP4.76□□□□□ -1.65
PTCHD4-201ENST00000339488 MYCBP2O75592 4640 aa4.71□□□□□ -1.65
PTCHD4-201ENST00000339488 KIAA1109Q2LD37 5005 aa4.71□□□□□ -1.66
PTCHD4-201ENST00000339488 FAT1Q14517 4588 aa4.71□□□□□ -1.66
PTCHD4-201ENST00000339488 A0A1B0GVY2 172 aa4.7□□□□□ -1.66
PTCHD4-201ENST00000339488 KRTAP10-1P60331 282 aa4.69□□□□□ -1.66
PTCHD4-201ENST00000339488 HSPG2P98160 4391 aa4.67□□□□□ -1.66
PTCHD4-201ENST00000339488 RYR1P21817 5038 aa4.65□□□□□ -1.67
PTCHD4-201ENST00000339488 J3QL48 77 aa4.64□□□□□ -1.67
PTCHD4-201ENST00000339488 KRTAP17-1Q9BYP8 105 aa4.59□□□□□ -1.67
PTCHD4-201ENST00000339488 BIRC6Q9NR09 4857 aa4.59□□□□□ -1.67
PTCHD4-201ENST00000339488 SMR3BP02814 79 aaPredicted RBP4.59□□□□□ -1.68
PTCHD4-201ENST00000339488 CAMK2N1Q7Z7J9 78 aa4.58□□□□□ -1.68
PTCHD4-201ENST00000339488 M0QZ58 72 aa4.56□□□□□ -1.68
PTCHD4-201ENST00000339488 LPAP08519 4548 aa4.55□□□□□ -1.68
PTCHD4-201ENST00000339488 PRO2289Q9P1D8 64 aa4.54□□□□□ -1.68
PTCHD4-201ENST00000339488 LRP1Q07954 4544 aaKnown RBP4.54□□□□□ -1.68
PTCHD4-201ENST00000339488 ABCA13Q86UQ4 5058 aa4.53□□□□□ -1.68
PTCHD4-201ENST00000339488 HERC2O95714 4834 aa4.51□□□□□ -1.69
PTCHD4-201ENST00000339488 PKHD1L1Q86WI1 4243 aa4.51□□□□□ -1.69
PTCHD4-201ENST00000339488 KRTAP10-4P60372 401 aaPredicted RBP4.49□□□□□ -1.69
PTCHD4-201ENST00000339488 RPS29P62273 56 aaKnown RBP4.48□□□□□ -1.69
PTCHD4-201ENST00000339488 R4GN34 69 aa4.47□□□□□ -1.69
PTCHD4-201ENST00000339488 KRTAP4-5Q9BYR2 181 aa4.47□□□□□ -1.69
PTCHD4-201ENST00000339488 PCLOQ9Y6V0 5065 aa4.47□□□□□ -1.69
PTCHD4-201ENST00000339488 Q5VSD8 79 aa4.46□□□□□ -1.7
PTCHD4-201ENST00000339488 FAT3Q8TDW7 4589 aa4.44□□□□□ -1.7
PTCHD4-201ENST00000339488 LORP23490 312 aaPredicted RBP4.43□□□□□ -1.7
PTCHD4-201ENST00000339488 TNXBP22105 4242 aa4.41□□□□□ -1.7
PTCHD4-201ENST00000339488 PP632Q6XCG6 107 aa4.36□□□□□ -1.71
PTCHD4-201ENST00000339488 SPRR5A0A1B0GTR4 108 aa4.35□□□□□ -1.71
PTCHD4-201ENST00000339488 HERC1Q15751 4861 aa4.34□□□□□ -1.71
PTCHD4-201ENST00000339488 LRP2P98164 4655 aa4.29□□□□□ -1.72
PTCHD4-201ENST00000339488 MT1HL1P0DM35 61 aa4.28□□□□□ -1.72
PTCHD4-201ENST00000339488 INE1O15225 51 aa4.25□□□□□ -1.73
PTCHD4-201ENST00000339488 HMCN2Q8NDA2 5059 aa4.18□□□□□ -1.74
PTCHD4-201ENST00000339488 TNP1P09430 55 aa4.15□□□□□ -1.75
PTCHD4-201ENST00000339488 UBR4Q5T4S7 5183 aa4.1□□□□□ -1.75
PTCHD4-201ENST00000339488 LCE2DQ5TA82 110 aaPredicted RBP4.08□□□□□ -1.76
PTCHD4-201ENST00000339488 MUC2Q02817 5179 aa4.06□□□□□ -1.76
PTCHD4-201ENST00000339488 RNF213Q63HN8 5207 aa4.04□□□□□ -1.76
PTCHD4-201ENST00000339488 LCE3AQ5TA76 89 aa3.99□□□□□ -1.77
PTCHD4-201ENST00000339488 KRTAP23-1A1A580 65 aa3.93□□□□□ -1.78
PTCHD4-201ENST00000339488 MUC17Q685J3 4493 aa3.92□□□□□ -1.78
PTCHD4-201ENST00000339488 FAT4Q6V0I7 4981 aa3.9□□□□□ -1.79
PTCHD4-201ENST00000339488 KRTAP4-1Q9BYQ7 146 aa3.89□□□□□ -1.79
PTCHD4-201ENST00000339488 FLGP20930 4061 aaPredicted RBP3.84□□□□□ -1.8
PTCHD4-201ENST00000339488 KRTAP10-10P60014 251 aa3.82□□□□□ -1.8
PTCHD4-201ENST00000339488 KRTAP10-12P60413 245 aa3.77□□□□□ -1.81
PTCHD4-201ENST00000339488 KRTAP19-2Q3LHN2 52 aa3.74□□□□□ -1.81
PTCHD4-201ENST00000339488 LCE2CQ5TA81 110 aa3.7□□□□□ -1.82
PTCHD4-201ENST00000339488 KRTAP8-1Q8IUC2 63 aa3.69□□□□□ -1.82
PTCHD4-201ENST00000339488 KRTAP12-3P60328 96 aa3.69□□□□□ -1.82
PTCHD4-201ENST00000339488 MT1HP80294 61 aa3.62□□□□□ -1.83
PTCHD4-201ENST00000339488 KRTAP19-1Q8IUB9 90 aa3.57□□□□□ -1.84
PTCHD4-201ENST00000339488 M0R2T5 61 aa3.57□□□□□ -1.84
PTCHD4-201ENST00000339488 KRTAP10-5P60370 271 aa3.56□□□□□ -1.84
PTCHD4-201ENST00000339488 LCE2AQ5TA79 106 aaPredicted RBP3.56□□□□□ -1.84
PTCHD4-201ENST00000339488 KRTAP9-6A8MVA2 160 aa3.55□□□□□ -1.84
PTCHD4-201ENST00000339488 KMT2DO14686 5537 aa3.53□□□□□ -1.84
PTCHD4-201ENST00000339488 SPRR2GQ9BYE4 73 aa3.5□□□□□ -1.85
PTCHD4-201ENST00000339488 KRTAP10-7P60409 375 aaPredicted RBP3.49□□□□□ -1.85
PTCHD4-201ENST00000339488 LCE3CQ5T5A8 94 aa3.47□□□□□ -1.85
PTCHD4-201ENST00000339488 KRTAP9-8Q9BYQ0 159 aa3.46□□□□□ -1.85
PTCHD4-201ENST00000339488 MT2AP02795 61 aa3.45□□□□□ -1.86
PTCHD4-201ENST00000339488 MT1FP04733 61 aa3.45□□□□□ -1.86
PTCHD4-201ENST00000339488 KRTAP2-3P0C7H8 128 aa3.44□□□□□ -1.86
PTCHD4-201ENST00000339488 KRTAP2-4Q9BYR9 128 aa3.44□□□□□ -1.86
PTCHD4-201ENST00000339488 KRTAP2-1Q9BYU5 128 aa3.44□□□□□ -1.86
PTCHD4-201ENST00000339488 MT1XP80297 61 aa3.43□□□□□ -1.86
PTCHD4-201ENST00000339488 USH2AO75445 5202 aa3.43□□□□□ -1.86
PTCHD4-201ENST00000339488 LCE2BO14633 110 aa3.42□□□□□ -1.86
PTCHD4-201ENST00000339488 KRTAP4-7Q9BYR0 210 aa3.41□□□□□ -1.86
PTCHD4-201ENST00000339488 KRTAP19-5Q3LI72 72 aa3.41□□□□□ -1.86
PTCHD4-201ENST00000339488 FSIP2Q5CZC0 6907 aa3.4□□□□□ -1.86
PTCHD4-201ENST00000339488 KRTAP9-3Q9BYQ3 159 aa3.33□□□□□ -1.88
PTCHD4-201ENST00000339488 KRTAP12-4P60329 112 aa3.32□□□□□ -1.88
PTCHD4-201ENST00000339488 MT1BP07438 61 aa3.3□□□□□ -1.88
PTCHD4-201ENST00000339488 SSPOA2VEC9 5147 aa3.3□□□□□ -1.88
PTCHD4-201ENST00000339488 KRTAP9-2Q9BYQ4 174 aa3.24□□□□□ -1.89
PTCHD4-201ENST00000339488 KRTAP19-8Q3LI54 63 aa3.23□□□□□ -1.89
PTCHD4-201ENST00000339488 KRTAP4-8A0A0G2JLE6 195 aa3.22□□□□□ -1.89
PTCHD4-201ENST00000339488 KRTAP4-8Q9BYQ9 185 aa3.22□□□□□ -1.89
PTCHD4-201ENST00000339488 FCGBPQ9Y6R7 5405 aaPredicted RBP3.15□□□□□ -1.91
PTCHD4-201ENST00000339488 LOC100996750A0A140TA64 210 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms