RNA–Protein interactions for RNA: ENST00000334527.11

NDEL1-201, Transcript of nudE neurodevelopment protein 1 like 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDEL1, Length 2,372 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDEL1-201ENST00000334527 RYR1P21817 5038 aa12.09□□□□□ -0.47
NDEL1-201ENST00000334527 DMBT1Q9UGM3 2413 aaPredicted RBP12.06□□□□□ -0.48
NDEL1-201ENST00000334527 RYR3Q15413 4870 aa12.05□□□□□ -0.48
NDEL1-201ENST00000334527 KRTAP17-1Q9BYP8 105 aa12.04□□□□□ -0.48
NDEL1-201ENST00000334527 KRTAP3-3Q9BYR6 98 aa11.99□□□□□ -0.49
NDEL1-201ENST00000334527 CSAG1Q6PB30 78 aa11.97□□□□□ -0.49
NDEL1-201ENST00000334527 MYCBP2O75592 4640 aa11.97□□□□□ -0.49
NDEL1-201ENST00000334527 MT1HL1P0DM35 61 aa11.93□□□□□ -0.5
NDEL1-201ENST00000334527 S4R3F8 94 aa11.91□□□□□ -0.5
NDEL1-201ENST00000334527 KIAA1109Q2LD37 5005 aa11.9□□□□□ -0.5
NDEL1-201ENST00000334527 KRTAP10-6P60371 365 aaPredicted RBP11.87□□□□□ -0.51
NDEL1-201ENST00000334527 LINC01554Q52M75 96 aa11.87□□□□□ -0.51
NDEL1-201ENST00000334527 K7ERS5 55 aa11.82□□□□□ -0.52
NDEL1-201ENST00000334527 KRTAP3-2Q9BYR7 98 aa11.79□□□□□ -0.52
NDEL1-201ENST00000334527 KRTAP13-4Q3LI77 160 aa11.75□□□□□ -0.53
NDEL1-201ENST00000334527 A0A0D9SG42 100 aa11.67□□□□□ -0.54
NDEL1-201ENST00000334527 P0C880 135 aa11.67□□□□□ -0.54
NDEL1-201ENST00000334527 TPRXLQ17RH7 258 aa11.67□□□□□ -0.54
NDEL1-201ENST00000334527 KRTAP25-1Q3LHN0 102 aa11.65□□□□□ -0.54
NDEL1-201ENST00000334527 LPAP08519 4548 aa11.65□□□□□ -0.55
NDEL1-201ENST00000334527 EPPK1P58107 5090 aaKnown RBP11.62□□□□□ -0.55
NDEL1-201ENST00000334527 LRP2P98164 4655 aa11.62□□□□□ -0.55
NDEL1-201ENST00000334527 ROMO1P60602 79 aa11.54□□□□□ -0.56
NDEL1-201ENST00000334527 CRIPTQ9P021 101 aa11.53□□□□□ -0.56
NDEL1-201ENST00000334527 ABCA13Q86UQ4 5058 aa11.5□□□□□ -0.57
NDEL1-201ENST00000334527 KRTAP4-5Q9BYR2 181 aa11.43□□□□□ -0.58
NDEL1-201ENST00000334527 KRTAP12-2P59991 146 aa11.37□□□□□ -0.59
NDEL1-201ENST00000334527 KRTAP12-1P59990 96 aa11.29□□□□□ -0.6
NDEL1-201ENST00000334527 SPINT4Q6UDR6 99 aa11.28□□□□□ -0.6
NDEL1-201ENST00000334527 M0QZ58 72 aa11.28□□□□□ -0.6
NDEL1-201ENST00000334527 SEC61BP60468 96 aaKnown RBP11.23□□□□□ -0.61
NDEL1-201ENST00000334527 MUC17Q685J3 4493 aa11.14□□□□□ -0.63
NDEL1-201ENST00000334527 C10orf95Q9H7T3 257 aa11.13□□□□□ -0.63
NDEL1-201ENST00000334527 J3QL48 77 aa11.11□□□□□ -0.63
NDEL1-201ENST00000334527 KRTAP4-1Q9BYQ7 146 aa11.09□□□□□ -0.63
NDEL1-201ENST00000334527 R4GN34 69 aa11.05□□□□□ -0.64
NDEL1-201ENST00000334527 HERC2O95714 4834 aa10.97□□□□□ -0.65
NDEL1-201ENST00000334527 LORP23490 312 aaPredicted RBP10.92□□□□□ -0.66
NDEL1-201ENST00000334527 KRTAP19-2Q3LHN2 52 aa10.88□□□□□ -0.67
NDEL1-201ENST00000334527 H3BS24 57 aa10.68□□□□□ -0.7
NDEL1-201ENST00000334527 MUC2Q02817 5179 aa10.68□□□□□ -0.7
NDEL1-201ENST00000334527 BIRC6Q9NR09 4857 aa10.65□□□□□ -0.7
NDEL1-201ENST00000334527 KRTAP15-1Q3LI76 137 aa10.6□□□□□ -0.71
NDEL1-201ENST00000334527 FLGP20930 4061 aaPredicted RBP10.56□□□□□ -0.72
NDEL1-201ENST00000334527 CAMK2N1Q7Z7J9 78 aa10.48□□□□□ -0.73
NDEL1-201ENST00000334527 HERC1Q15751 4861 aa10.44□□□□□ -0.74
NDEL1-201ENST00000334527 PCLOQ9Y6V0 5065 aa10.43□□□□□ -0.74
NDEL1-201ENST00000334527 HMCN2Q8NDA2 5059 aa10.41□□□□□ -0.74
NDEL1-201ENST00000334527 NDUFAF8A1L188 74 aa10.31□□□□□ -0.76
NDEL1-201ENST00000334527 LCE2CQ5TA81 110 aa10.25□□□□□ -0.77
NDEL1-201ENST00000334527 PP632Q6XCG6 107 aa10.24□□□□□ -0.77
NDEL1-201ENST00000334527 PLAC4Q8WY50 150 aa10.21□□□□□ -0.78
NDEL1-201ENST00000334527 FAT4Q6V0I7 4981 aa10.16□□□□□ -0.78
NDEL1-201ENST00000334527 TNP1P09430 55 aa10.07□□□□□ -0.8
NDEL1-201ENST00000334527 M0R2T5 61 aa10.04□□□□□ -0.8
NDEL1-201ENST00000334527 SPRR2GQ9BYE4 73 aa10.03□□□□□ -0.8
NDEL1-201ENST00000334527 RNF213Q63HN8 5207 aa10□□□□□ -0.81
NDEL1-201ENST00000334527 KRTAP19-1Q8IUB9 90 aa9.99□□□□□ -0.81
NDEL1-201ENST00000334527 MT1HP80294 61 aa9.98□□□□□ -0.81
NDEL1-201ENST00000334527 UBR4Q5T4S7 5183 aa9.94□□□□□ -0.82
NDEL1-201ENST00000334527 KRTAP23-1A1A580 65 aa9.91□□□□□ -0.82
NDEL1-201ENST00000334527 MT2AP02795 61 aa9.82□□□□□ -0.84
NDEL1-201ENST00000334527 MT1FP04733 61 aa9.82□□□□□ -0.84
NDEL1-201ENST00000334527 KRTAP10-10P60014 251 aa9.82□□□□□ -0.84
NDEL1-201ENST00000334527 KRTAP9-8Q9BYQ0 159 aa9.74□□□□□ -0.85
NDEL1-201ENST00000334527 LUZP6Q538Z0 58 aa9.71□□□□□ -0.85
NDEL1-201ENST00000334527 KRTAP19-8Q3LI54 63 aa9.59□□□□□ -0.87
NDEL1-201ENST00000334527 LCE3AQ5TA76 89 aa9.56□□□□□ -0.88
NDEL1-201ENST00000334527 SPRR5A0A1B0GTR4 108 aa9.51□□□□□ -0.89
NDEL1-201ENST00000334527 A0A0A0MQY5 61 aa9.49□□□□□ -0.89
NDEL1-201ENST00000334527 MT1BP07438 61 aa9.48□□□□□ -0.89
NDEL1-201ENST00000334527 KRTAP10-5P60370 271 aa9.42□□□□□ -0.9
NDEL1-201ENST00000334527 MT1XP80297 61 aa9.4□□□□□ -0.9
NDEL1-201ENST00000334527 KRTAP9-3Q9BYQ3 159 aa9.34□□□□□ -0.91
NDEL1-201ENST00000334527 KRTAP8-1Q8IUC2 63 aa9.3□□□□□ -0.92
NDEL1-201ENST00000334527 KRTAP10-12P60413 245 aa9.21□□□□□ -0.93
NDEL1-201ENST00000334527 KRTAP10-7P60409 375 aaPredicted RBP9.14□□□□□ -0.95
NDEL1-201ENST00000334527 KRTAP12-3P60328 96 aa9.1□□□□□ -0.95
NDEL1-201ENST00000334527 PRO2289Q9P1D8 64 aa9.07□□□□□ -0.96
NDEL1-201ENST00000334527 LCE2BO14633 110 aa8.98□□□□□ -0.97
NDEL1-201ENST00000334527 LCE2AQ5TA79 106 aaPredicted RBP8.83□□□□□ -1
NDEL1-201ENST00000334527 USH2AO75445 5202 aa8.81□□□□□ -1
NDEL1-201ENST00000334527 KRTAP19-5Q3LI72 72 aa8.75□□□□□ -1.01
NDEL1-201ENST00000334527 KMT2DO14686 5537 aa8.64□□□□□ -1.03
NDEL1-201ENST00000334527 KRTAP4-8A0A0G2JLE6 195 aa8.58□□□□□ -1.04
NDEL1-201ENST00000334527 KRTAP4-8Q9BYQ9 185 aa8.58□□□□□ -1.04
NDEL1-201ENST00000334527 LCE3CQ5T5A8 94 aa8.56□□□□□ -1.04
NDEL1-201ENST00000334527 KRTAP19-7Q3SYF9 63 aa8.37□□□□□ -1.07
NDEL1-201ENST00000334527 INE1O15225 51 aa8.3□□□□□ -1.08
NDEL1-201ENST00000334527 SSPOA2VEC9 5147 aa8.28□□□□□ -1.08
NDEL1-201ENST00000334527 KRTAP9-6A8MVA2 160 aa8.24□□□□□ -1.09
NDEL1-201ENST00000334527 KRTAP4-7Q9BYR0 210 aa8.19□□□□□ -1.1
NDEL1-201ENST00000334527 MT1EP04732 61 aa8.14□□□□□ -1.11
NDEL1-201ENST00000334527 MT1LQ93083 61 aa8.13□□□□□ -1.11
NDEL1-201ENST00000334527 KRTAP19-4Q3LI73 84 aa8.09□□□□□ -1.11
NDEL1-201ENST00000334527 KRTAP19-6Q3LI70 58 aa8.06□□□□□ -1.12
NDEL1-201ENST00000334527 FSIP2Q5CZC0 6907 aa7.96□□□□□ -1.13
NDEL1-201ENST00000334527 KRTAP2-3P0C7H8 128 aa7.92□□□□□ -1.14
NDEL1-201ENST00000334527 KRTAP2-4Q9BYR9 128 aa7.92□□□□□ -1.14
NDEL1-201ENST00000334527 KRTAP2-1Q9BYU5 128 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms