RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 C8orf87E5RJ46 101 aa8.81□□□□□ -1
SHOX-201ENST00000334060 C20orf166-AS1Q96NR2 134 aa8.81□□□□□ -1
SHOX-201ENST00000334060 RPL37P61927 97 aaKnown RBP8.8□□□□□ -1
SHOX-201ENST00000334060 A8MUU9 505 aa8.79□□□□□ -1
SHOX-201ENST00000334060 PCOTHQ58A44 107 aa8.79□□□□□ -1
SHOX-201ENST00000334060 MRPL34Q9BQ48 92 aaKnown RBP8.76□□□□□ -1.01
SHOX-201ENST00000334060 HRES1P13985 223 aa8.73□□□□□ -1.01
SHOX-201ENST00000334060 Q5W150 140 aa8.7□□□□□ -1.02
SHOX-201ENST00000334060 ACYP2P14621 99 aa8.68□□□□□ -1.02
SHOX-201ENST00000334060 SPINK7P58062 85 aa8.68□□□□□ -1.02
SHOX-201ENST00000334060 SEC61BP60468 96 aaKnown RBP8.64□□□□□ -1.03
SHOX-201ENST00000334060 FAT4Q6V0I7 4981 aa8.62□□□□□ -1.03
SHOX-201ENST00000334060 SPATA8Q6RVD6 105 aa8.59□□□□□ -1.03
SHOX-201ENST00000334060 LINC01554Q52M75 96 aa8.57□□□□□ -1.04
SHOX-201ENST00000334060 DMAC1Q96GE9 116 aa8.55□□□□□ -1.04
SHOX-201ENST00000334060 A0A1B0GU69 56 aa8.53□□□□□ -1.04
SHOX-201ENST00000334060 UQCR11O14957 56 aa8.5□□□□□ -1.05
SHOX-201ENST00000334060 IGKV2D-30A0A075B6S6 120 aa8.48□□□□□ -1.05
SHOX-201ENST00000334060 IGKV2-30P06310 120 aa8.48□□□□□ -1.05
SHOX-201ENST00000334060 KRTAP19-2Q3LHN2 52 aa8.48□□□□□ -1.05
SHOX-201ENST00000334060 MIR22HGQ0VDD5 57 aa8.45□□□□□ -1.06
SHOX-201ENST00000334060 LCE2CQ5TA81 110 aa8.41□□□□□ -1.06
SHOX-201ENST00000334060 PRAC1Q96KF2 57 aa8.39□□□□□ -1.07
SHOX-201ENST00000334060 FLGP20930 4061 aaPredicted RBP8.31□□□□□ -1.08
SHOX-201ENST00000334060 ADM2Q7Z4H4 148 aa8.28□□□□□ -1.08
SHOX-201ENST00000334060 KRTAP3-1Q9BYR8 98 aa8.27□□□□□ -1.09
SHOX-201ENST00000334060 H3BS24 57 aa8.25□□□□□ -1.09
SHOX-201ENST00000334060 COX6B2Q6YFQ2 88 aa8.24□□□□□ -1.09
SHOX-201ENST00000334060 MT1HP80294 61 aa8.22□□□□□ -1.09
SHOX-201ENST00000334060 CSAG1Q6PB30 78 aa8.22□□□□□ -1.09
SHOX-201ENST00000334060 LCE2AQ5TA79 106 aaPredicted RBP8.16□□□□□ -1.1
SHOX-201ENST00000334060 KRTAP25-1Q3LHN0 102 aa8.08□□□□□ -1.12
SHOX-201ENST00000334060 H1FX-AS1Q4G0G2 97 aa8.06□□□□□ -1.12
SHOX-201ENST00000334060 M0R2T5 61 aa8.01□□□□□ -1.13
SHOX-201ENST00000334060 K7ERS5 55 aa8□□□□□ -1.13
SHOX-201ENST00000334060 ROMO1P60602 79 aa8□□□□□ -1.13
SHOX-201ENST00000334060 KRTAP3-3Q9BYR6 98 aa7.98□□□□□ -1.13
SHOX-201ENST00000334060 KRTAP10-6P60371 365 aaPredicted RBP7.95□□□□□ -1.14
SHOX-201ENST00000334060 A0A1B0GU33 70 aa7.94□□□□□ -1.14
SHOX-201ENST00000334060 S4R3F8 94 aa7.93□□□□□ -1.14
SHOX-201ENST00000334060 LORP23490 312 aaPredicted RBP7.92□□□□□ -1.14
SHOX-201ENST00000334060 H0YAA0 97 aa7.91□□□□□ -1.14
SHOX-201ENST00000334060 KRTAP9-8Q9BYQ0 159 aa7.87□□□□□ -1.15
SHOX-201ENST00000334060 MT2AP02795 61 aa7.8□□□□□ -1.16
SHOX-201ENST00000334060 MT1FP04733 61 aa7.79□□□□□ -1.16
SHOX-201ENST00000334060 KRTAP10-10P60014 251 aa7.66□□□□□ -1.18
SHOX-201ENST00000334060 P0C880 135 aa7.6□□□□□ -1.19
SHOX-201ENST00000334060 KRTAP3-2Q9BYR7 98 aa7.59□□□□□ -1.19
SHOX-201ENST00000334060 KRTAP9-3Q9BYQ3 159 aa7.59□□□□□ -1.2
SHOX-201ENST00000334060 FSIP2Q5CZC0 6907 aa7.58□□□□□ -1.2
SHOX-201ENST00000334060 SPINT4Q6UDR6 99 aa7.55□□□□□ -1.2
SHOX-201ENST00000334060 USH2AO75445 5202 aa7.54□□□□□ -1.2
SHOX-201ENST00000334060 LCE2BO14633 110 aa7.51□□□□□ -1.21
SHOX-201ENST00000334060 KRTAP19-1Q8IUB9 90 aa7.49□□□□□ -1.21
SHOX-201ENST00000334060 KRTAP9-2Q9BYQ4 174 aa7.48□□□□□ -1.21
SHOX-201ENST00000334060 CRIPTQ9P021 101 aa7.47□□□□□ -1.21
SHOX-201ENST00000334060 KRTAP15-1Q3LI76 137 aa7.43□□□□□ -1.22
SHOX-201ENST00000334060 LCE2DQ5TA82 110 aaPredicted RBP7.43□□□□□ -1.22
SHOX-201ENST00000334060 SSPOA2VEC9 5147 aa7.37□□□□□ -1.23
SHOX-201ENST00000334060 KRTAP13-4Q3LI77 160 aa7.35□□□□□ -1.23
SHOX-201ENST00000334060 SPRR2GQ9BYE4 73 aa7.35□□□□□ -1.23
SHOX-201ENST00000334060 NDUFAF8A1L188 74 aa7.31□□□□□ -1.24
SHOX-201ENST00000334060 M0QZ58 72 aa7.31□□□□□ -1.24
SHOX-201ENST00000334060 R4GN34 69 aa7.28□□□□□ -1.24
SHOX-201ENST00000334060 MT1BP07438 61 aa7.27□□□□□ -1.25
SHOX-201ENST00000334060 A0A0D9SG42 100 aa7.26□□□□□ -1.25
SHOX-201ENST00000334060 KRTAP19-8Q3LI54 63 aa7.22□□□□□ -1.25
SHOX-201ENST00000334060 C10orf95Q9H7T3 257 aa7.17□□□□□ -1.26
SHOX-201ENST00000334060 KRTAP12-1P59990 96 aa7.13□□□□□ -1.27
SHOX-201ENST00000334060 KRTAP12-2P59991 146 aa7.13□□□□□ -1.27
SHOX-201ENST00000334060 CRCT1Q9UGL9 99 aa7.11□□□□□ -1.27
SHOX-201ENST00000334060 FCGBPQ9Y6R7 5405 aaPredicted RBP7.05□□□□□ -1.28
SHOX-201ENST00000334060 KRTAP9-6A0A140TA67 174 aa7□□□□□ -1.29
SHOX-201ENST00000334060 KRTAP19-6Q3LI70 58 aa7□□□□□ -1.29
SHOX-201ENST00000334060 MT1XP80297 61 aa6.94□□□□□ -1.3
SHOX-201ENST00000334060 PLAC4Q8WY50 150 aa6.94□□□□□ -1.3
SHOX-201ENST00000334060 A0A0A0MQY5 61 aa6.93□□□□□ -1.3
SHOX-201ENST00000334060 KRTAP10-5P60370 271 aa6.92□□□□□ -1.3
SHOX-201ENST00000334060 LUZP6Q538Z0 58 aa6.91□□□□□ -1.3
SHOX-201ENST00000334060 PP632Q6XCG6 107 aa6.91□□□□□ -1.3
SHOX-201ENST00000334060 MACF1Q9UPN3 7388 aaKnown RBP6.8□□□□□ -1.32
SHOX-201ENST00000334060 KMT2DO14686 5537 aa6.78□□□□□ -1.32
SHOX-201ENST00000334060 CAMK2N1Q7Z7J9 78 aa6.77□□□□□ -1.33
SHOX-201ENST00000334060 KRTAP10-7P60409 375 aaPredicted RBP6.7□□□□□ -1.34
SHOX-201ENST00000334060 SYNE2Q8WXH0 6885 aaKnown RBP6.7□□□□□ -1.34
SHOX-201ENST00000334060 PRO2289Q9P1D8 64 aa6.67□□□□□ -1.34
SHOX-201ENST00000334060 KRTAP23-1A1A580 65 aa6.64□□□□□ -1.35
SHOX-201ENST00000334060 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.63□□□□□ -1.35
SHOX-201ENST00000334060 KRTAP4-8A0A0G2JLE6 195 aa6.58□□□□□ -1.36
SHOX-201ENST00000334060 KRTAP4-8Q9BYQ9 185 aa6.58□□□□□ -1.36
SHOX-201ENST00000334060 KRTAP10-12P60413 245 aa6.51□□□□□ -1.37
SHOX-201ENST00000334060 SPRR5A0A1B0GTR4 108 aa6.46□□□□□ -1.38
SHOX-201ENST00000334060 TNP1P09430 55 aa6.38□□□□□ -1.39
SHOX-201ENST00000334060 KRTAP9-7A8MTY7 169 aa6.37□□□□□ -1.39
SHOX-201ENST00000334060 MUC12Q9UKN1 5478 aa6.35□□□□□ -1.39
SHOX-201ENST00000334060 KRTAP8-1Q8IUC2 63 aa6.33□□□□□ -1.4
SHOX-201ENST00000334060 LCE3AQ5TA76 89 aa6.31□□□□□ -1.4
SHOX-201ENST00000334060 KRTAP6-3Q3LI67 103 aa6.26□□□□□ -1.41
SHOX-201ENST00000334060 MDN1Q9NU22 5596 aa6.25□□□□□ -1.41
SHOX-201ENST00000334060 SPRR2FQ96RM1 72 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms