RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 SPATA8Q6RVD6 105 aa8.61□□□□□ -1.03
PDGFB-201ENST00000331163 CRIPTQ9P021 101 aa8.58□□□□□ -1.04
PDGFB-201ENST00000331163 RPS29P62273 56 aaKnown RBP8.56□□□□□ -1.04
PDGFB-201ENST00000331163 COX6B2Q6YFQ2 88 aa8.55□□□□□ -1.04
PDGFB-201ENST00000331163 ABCA13Q86UQ4 5058 aa8.54□□□□□ -1.04
PDGFB-201ENST00000331163 XP32Q5T750 250 aa8.54□□□□□ -1.04
PDGFB-201ENST00000331163 KRTAP16-1A8MUX0 517 aa8.52□□□□□ -1.05
PDGFB-201ENST00000331163 LRP2P98164 4655 aa8.45□□□□□ -1.06
PDGFB-201ENST00000331163 BIRC6Q9NR09 4857 aa8.44□□□□□ -1.06
PDGFB-201ENST00000331163 RPL37P61927 97 aaKnown RBP8.41□□□□□ -1.06
PDGFB-201ENST00000331163 A8MUU9 505 aa8.41□□□□□ -1.06
PDGFB-201ENST00000331163 C20orf166-AS1Q96NR2 134 aa8.4□□□□□ -1.06
PDGFB-201ENST00000331163 HERC1Q15751 4861 aa8.39□□□□□ -1.07
PDGFB-201ENST00000331163 LPAP08519 4548 aa8.37□□□□□ -1.07
PDGFB-201ENST00000331163 PKHD1L1Q86WI1 4243 aa8.37□□□□□ -1.07
PDGFB-201ENST00000331163 SEC61BP60468 96 aaKnown RBP8.36□□□□□ -1.07
PDGFB-201ENST00000331163 PCLOQ9Y6V0 5065 aa8.31□□□□□ -1.08
PDGFB-201ENST00000331163 H0YAA0 97 aa8.3□□□□□ -1.08
PDGFB-201ENST00000331163 A0A1B0GU33 70 aa8.3□□□□□ -1.08
PDGFB-201ENST00000331163 TPRXLQ17RH7 258 aa8.29□□□□□ -1.08
PDGFB-201ENST00000331163 M0R2T5 61 aa8.25□□□□□ -1.09
PDGFB-201ENST00000331163 KRTAP25-1Q3LHN0 102 aa8.23□□□□□ -1.09
PDGFB-201ENST00000331163 K7ERS5 55 aa8.22□□□□□ -1.09
PDGFB-201ENST00000331163 A0A0D9SG42 100 aa8.2□□□□□ -1.1
PDGFB-201ENST00000331163 MUC2Q02817 5179 aa8.2□□□□□ -1.1
PDGFB-201ENST00000331163 TNXBP22105 4242 aa8.18□□□□□ -1.1
PDGFB-201ENST00000331163 ROMO1P60602 79 aa8.16□□□□□ -1.1
PDGFB-201ENST00000331163 H1FX-AS1Q4G0G2 97 aa8.16□□□□□ -1.1
PDGFB-201ENST00000331163 S4R3F8 94 aa8.14□□□□□ -1.11
PDGFB-201ENST00000331163 RNF213Q63HN8 5207 aa8.14□□□□□ -1.11
PDGFB-201ENST00000331163 SPINT4Q6UDR6 99 aa8.1□□□□□ -1.11
PDGFB-201ENST00000331163 KRTAP3-1Q9BYR8 98 aa8.05□□□□□ -1.12
PDGFB-201ENST00000331163 UBR4Q5T4S7 5183 aa8.03□□□□□ -1.12
PDGFB-201ENST00000331163 NDUFAF8A1L188 74 aa7.99□□□□□ -1.13
PDGFB-201ENST00000331163 P0C880 135 aa7.98□□□□□ -1.13
PDGFB-201ENST00000331163 C10orf95Q9H7T3 257 aa7.98□□□□□ -1.13
PDGFB-201ENST00000331163 KRTAP4-1Q9BYQ7 146 aa7.97□□□□□ -1.13
PDGFB-201ENST00000331163 A0A0A0MQY5 61 aa7.92□□□□□ -1.14
PDGFB-201ENST00000331163 FAT4Q6V0I7 4981 aa7.84□□□□□ -1.15
PDGFB-201ENST00000331163 KRTAP13-4Q3LI77 160 aa7.83□□□□□ -1.16
PDGFB-201ENST00000331163 R4GN34 69 aa7.78□□□□□ -1.16
PDGFB-201ENST00000331163 M0QZ58 72 aa7.76□□□□□ -1.17
PDGFB-201ENST00000331163 HMCN2Q8NDA2 5059 aa7.73□□□□□ -1.17
PDGFB-201ENST00000331163 KRTAP10-6P60371 365 aaPredicted RBP7.71□□□□□ -1.17
PDGFB-201ENST00000331163 KRTAP3-3Q9BYR6 98 aa7.64□□□□□ -1.19
PDGFB-201ENST00000331163 KRTAP12-2P59991 146 aa7.63□□□□□ -1.19
PDGFB-201ENST00000331163 KRTAP3-2Q9BYR7 98 aa7.59□□□□□ -1.19
PDGFB-201ENST00000331163 KRTAP10-10P60014 251 aa7.58□□□□□ -1.2
PDGFB-201ENST00000331163 CAMK2N1Q7Z7J9 78 aa7.51□□□□□ -1.21
PDGFB-201ENST00000331163 FSIP2Q5CZC0 6907 aa7.51□□□□□ -1.21
PDGFB-201ENST00000331163 KRTAP15-1Q3LI76 137 aa7.48□□□□□ -1.21
PDGFB-201ENST00000331163 LORP23490 312 aaPredicted RBP7.46□□□□□ -1.22
PDGFB-201ENST00000331163 KRTAP12-1P59990 96 aa7.46□□□□□ -1.22
PDGFB-201ENST00000331163 LUZP6Q538Z0 58 aa7.43□□□□□ -1.22
PDGFB-201ENST00000331163 MT1HP80294 61 aa7.34□□□□□ -1.23
PDGFB-201ENST00000331163 MUC17Q685J3 4493 aa7.31□□□□□ -1.24
PDGFB-201ENST00000331163 LCE2CQ5TA81 110 aa7.25□□□□□ -1.25
PDGFB-201ENST00000331163 PLAC4Q8WY50 150 aa7.24□□□□□ -1.25
PDGFB-201ENST00000331163 KRTAP19-2Q3LHN2 52 aa7.22□□□□□ -1.25
PDGFB-201ENST00000331163 FLGP20930 4061 aaPredicted RBP7.15□□□□□ -1.26
PDGFB-201ENST00000331163 MT1FP04733 61 aa7.1□□□□□ -1.27
PDGFB-201ENST00000331163 MT2AP02795 61 aa7.09□□□□□ -1.27
PDGFB-201ENST00000331163 USH2AO75445 5202 aa7.03□□□□□ -1.28
PDGFB-201ENST00000331163 KRTAP9-8Q9BYQ0 159 aa6.93□□□□□ -1.3
PDGFB-201ENST00000331163 KRTAP19-1Q8IUB9 90 aa6.82□□□□□ -1.32
PDGFB-201ENST00000331163 TNP1P09430 55 aa6.79□□□□□ -1.32
PDGFB-201ENST00000331163 PP632Q6XCG6 107 aa6.71□□□□□ -1.34
PDGFB-201ENST00000331163 LCE2AQ5TA79 106 aaPredicted RBP6.71□□□□□ -1.34
PDGFB-201ENST00000331163 SPRR2GQ9BYE4 73 aa6.7□□□□□ -1.34
PDGFB-201ENST00000331163 KRTAP9-3Q9BYQ3 159 aa6.65□□□□□ -1.35
PDGFB-201ENST00000331163 PRO2289Q9P1D8 64 aa6.64□□□□□ -1.35
PDGFB-201ENST00000331163 LCE2BO14633 110 aa6.63□□□□□ -1.35
PDGFB-201ENST00000331163 MT1BP07438 61 aa6.56□□□□□ -1.36
PDGFB-201ENST00000331163 KMT2DO14686 5537 aa6.52□□□□□ -1.37
PDGFB-201ENST00000331163 KRTAP19-8Q3LI54 63 aa6.41□□□□□ -1.38
PDGFB-201ENST00000331163 LCE3AQ5TA76 89 aa6.39□□□□□ -1.39
PDGFB-201ENST00000331163 MT1XP80297 61 aa6.39□□□□□ -1.39
PDGFB-201ENST00000331163 KRTAP10-12P60413 245 aa6.38□□□□□ -1.39
PDGFB-201ENST00000331163 KRTAP10-7P60409 375 aaPredicted RBP6.37□□□□□ -1.39
PDGFB-201ENST00000331163 KRTAP10-5P60370 271 aa6.35□□□□□ -1.39
PDGFB-201ENST00000331163 SSPOA2VEC9 5147 aa6.32□□□□□ -1.4
PDGFB-201ENST00000331163 KRTAP4-8A0A0G2JLE6 195 aa6.32□□□□□ -1.4
PDGFB-201ENST00000331163 KRTAP4-8Q9BYQ9 185 aa6.32□□□□□ -1.4
PDGFB-201ENST00000331163 KRTAP9-2Q9BYQ4 174 aa6.27□□□□□ -1.41
PDGFB-201ENST00000331163 SPRR5A0A1B0GTR4 108 aa6.2□□□□□ -1.42
PDGFB-201ENST00000331163 DSTQ03001 7570 aaKnown RBP6.18□□□□□ -1.42
PDGFB-201ENST00000331163 KRTAP12-3P60328 96 aa6.12□□□□□ -1.43
PDGFB-201ENST00000331163 FCGBPQ9Y6R7 5405 aaPredicted RBP6.12□□□□□ -1.43
PDGFB-201ENST00000331163 KRTAP8-1Q8IUC2 63 aa6.12□□□□□ -1.43
PDGFB-201ENST00000331163 KRTAP23-1A1A580 65 aa6.1□□□□□ -1.43
PDGFB-201ENST00000331163 SYNE2Q8WXH0 6885 aaKnown RBP6.09□□□□□ -1.43
PDGFB-201ENST00000331163 MACF1Q9UPN3 7388 aaKnown RBP6.07□□□□□ -1.44
PDGFB-201ENST00000331163 CRCT1Q9UGL9 99 aa6.06□□□□□ -1.44
PDGFB-201ENST00000331163 KRTAP19-5Q3LI72 72 aa6.05□□□□□ -1.44
PDGFB-201ENST00000331163 MUC12Q9UKN1 5478 aa6.05□□□□□ -1.44
PDGFB-201ENST00000331163 SPRR2FQ96RM1 72 aa6□□□□□ -1.45
PDGFB-201ENST00000331163 KRTAP19-6Q3LI70 58 aa5.93□□□□□ -1.46
PDGFB-201ENST00000331163 LCE2DQ5TA82 110 aaPredicted RBP5.93□□□□□ -1.46
PDGFB-201ENST00000331163 OBSCNQ5VST9 7968 aa5.91□□□□□ -1.46
PDGFB-201ENST00000331163 INE1O15225 51 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms