RNA–Protein interactions for RNA: ENST00000328514.11

GINS3-202, Transcript of GINS complex subunit 3, humanhuman

TSL 1 (best) BASIC

Gene GINS3, Length 1,932 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GINS3-202ENST00000328514 COX6B2Q6YFQ2 88 aa5.99□□□□□ -1.45
GINS3-202ENST00000328514 PKHD1L1Q86WI1 4243 aa5.97□□□□□ -1.45
GINS3-202ENST00000328514 PKHD1P08F94 4074 aa5.97□□□□□ -1.45
GINS3-202ENST00000328514 C9orf92A6NGG3 77 aa5.93□□□□□ -1.46
GINS3-202ENST00000328514 DYNC1H1Q14204 4646 aaKnown RBP5.92□□□□□ -1.46
GINS3-202ENST00000328514 FLG2Q5D862 2391 aaPredicted RBP5.92□□□□□ -1.46
GINS3-202ENST00000328514 DMBT1Q9UGM3 2413 aaPredicted RBP5.91□□□□□ -1.46
GINS3-202ENST00000328514 HSPG2P98160 4391 aa5.91□□□□□ -1.46
GINS3-202ENST00000328514 RPL37P61927 97 aaKnown RBP5.89□□□□□ -1.47
GINS3-202ENST00000328514 P0C880 135 aa5.89□□□□□ -1.47
GINS3-202ENST00000328514 KRTAP10-6P60371 365 aaPredicted RBP5.88□□□□□ -1.47
GINS3-202ENST00000328514 CRIPTQ9P021 101 aa5.87□□□□□ -1.47
GINS3-202ENST00000328514 APOBP04114 4563 aaKnown RBP5.86□□□□□ -1.47
GINS3-202ENST00000328514 A0A1B0GVY2 172 aa5.85□□□□□ -1.47
GINS3-202ENST00000328514 KRTAP3-3Q9BYR6 98 aa5.84□□□□□ -1.48
GINS3-202ENST00000328514 KRTAP3-2Q9BYR7 98 aa5.82□□□□□ -1.48
GINS3-202ENST00000328514 KRTAP13-4Q3LI77 160 aa5.81□□□□□ -1.48
GINS3-202ENST00000328514 TPRXLQ17RH7 258 aa5.8□□□□□ -1.48
GINS3-202ENST00000328514 KRTAP10-4P60372 401 aaPredicted RBP5.79□□□□□ -1.48
GINS3-202ENST00000328514 J3QL48 77 aa5.77□□□□□ -1.49
GINS3-202ENST00000328514 FAT1Q14517 4588 aa5.75□□□□□ -1.49
GINS3-202ENST00000328514 SPINT4Q6UDR6 99 aa5.73□□□□□ -1.49
GINS3-202ENST00000328514 KRTAP15-1Q3LI76 137 aa5.72□□□□□ -1.49
GINS3-202ENST00000328514 A0A0D9SG42 100 aa5.72□□□□□ -1.49
GINS3-202ENST00000328514 FAT3Q8TDW7 4589 aa5.71□□□□□ -1.49
GINS3-202ENST00000328514 SMR3BP02814 79 aaPredicted RBP5.71□□□□□ -1.5
GINS3-202ENST00000328514 MYCBP2O75592 4640 aa5.7□□□□□ -1.5
GINS3-202ENST00000328514 S4R3F8 94 aa5.7□□□□□ -1.5
GINS3-202ENST00000328514 HMCN2Q8NDA2 5059 aa5.7□□□□□ -1.5
GINS3-202ENST00000328514 LRP1Q07954 4544 aaKnown RBP5.69□□□□□ -1.5
GINS3-202ENST00000328514 TNXBP22105 4242 aa5.67□□□□□ -1.5
GINS3-202ENST00000328514 C10orf95Q9H7T3 257 aa5.66□□□□□ -1.5
GINS3-202ENST00000328514 KRTAP9-6A0A140TA67 174 aa5.66□□□□□ -1.5
GINS3-202ENST00000328514 KRTAP12-2P59991 146 aa5.65□□□□□ -1.51
GINS3-202ENST00000328514 KRTAP10-8P60410 259 aa5.64□□□□□ -1.51
GINS3-202ENST00000328514 KRTAP12-1P59990 96 aa5.62□□□□□ -1.51
GINS3-202ENST00000328514 XP32Q5T750 250 aa5.62□□□□□ -1.51
GINS3-202ENST00000328514 KRTAP9-2Q9BYQ4 174 aa5.62□□□□□ -1.51
GINS3-202ENST00000328514 RNF213Q63HN8 5207 aa5.61□□□□□ -1.51
GINS3-202ENST00000328514 NDUFAF8A1L188 74 aa5.59□□□□□ -1.51
GINS3-202ENST00000328514 M0QZ58 72 aa5.57□□□□□ -1.52
GINS3-202ENST00000328514 SEC61BP60468 96 aaKnown RBP5.56□□□□□ -1.52
GINS3-202ENST00000328514 Q5VSD8 79 aa5.54□□□□□ -1.52
GINS3-202ENST00000328514 LRP2P98164 4655 aa5.38□□□□□ -1.55
GINS3-202ENST00000328514 FAT4Q6V0I7 4981 aa5.37□□□□□ -1.55
GINS3-202ENST00000328514 MUC2Q02817 5179 aa5.37□□□□□ -1.55
GINS3-202ENST00000328514 PLAC4Q8WY50 150 aa5.31□□□□□ -1.56
GINS3-202ENST00000328514 LPAP08519 4548 aa5.31□□□□□ -1.56
GINS3-202ENST00000328514 LCE2DQ5TA82 110 aaPredicted RBP5.31□□□□□ -1.56
GINS3-202ENST00000328514 MT1HL1P0DM35 61 aa5.3□□□□□ -1.56
GINS3-202ENST00000328514 R4GN34 69 aa5.29□□□□□ -1.56
GINS3-202ENST00000328514 PP632Q6XCG6 107 aa5.23□□□□□ -1.57
GINS3-202ENST00000328514 LUZP6Q538Z0 58 aa5.19□□□□□ -1.58
GINS3-202ENST00000328514 CRCT1Q9UGL9 99 aa5.19□□□□□ -1.58
GINS3-202ENST00000328514 LORP23490 312 aaPredicted RBP5.15□□□□□ -1.58
GINS3-202ENST00000328514 FSIP2Q5CZC0 6907 aa5.13□□□□□ -1.59
GINS3-202ENST00000328514 MUC17Q685J3 4493 aa5.12□□□□□ -1.59
GINS3-202ENST00000328514 LCE2AQ5TA79 106 aaPredicted RBP5.07□□□□□ -1.6
GINS3-202ENST00000328514 KRTAP23-1A1A580 65 aa5.06□□□□□ -1.6
GINS3-202ENST00000328514 CAMK2N1Q7Z7J9 78 aa5.03□□□□□ -1.6
GINS3-202ENST00000328514 KRTAP19-2Q3LHN2 52 aa5.01□□□□□ -1.61
GINS3-202ENST00000328514 SPRR5A0A1B0GTR4 108 aa5.01□□□□□ -1.61
GINS3-202ENST00000328514 KRTAP9-7A8MTY7 169 aa5.01□□□□□ -1.61
GINS3-202ENST00000328514 KRTAP4-1Q9BYQ7 146 aa4.97□□□□□ -1.61
GINS3-202ENST00000328514 TNP1P09430 55 aa4.93□□□□□ -1.62
GINS3-202ENST00000328514 FLGP20930 4061 aaPredicted RBP4.91□□□□□ -1.62
GINS3-202ENST00000328514 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.87□□□□□ -1.63
GINS3-202ENST00000328514 SPRR2GQ9BYE4 73 aa4.71□□□□□ -1.66
GINS3-202ENST00000328514 PRO2289Q9P1D8 64 aa4.66□□□□□ -1.66
GINS3-202ENST00000328514 KRTAP19-1Q8IUB9 90 aa4.63□□□□□ -1.67
GINS3-202ENST00000328514 LCE3AQ5TA76 89 aa4.61□□□□□ -1.67
GINS3-202ENST00000328514 INE1O15225 51 aa4.6□□□□□ -1.67
GINS3-202ENST00000328514 KRTAP8-1Q8IUC2 63 aa4.59□□□□□ -1.67
GINS3-202ENST00000328514 LCE2CQ5TA81 110 aa4.57□□□□□ -1.68
GINS3-202ENST00000328514 SSPOA2VEC9 5147 aa4.54□□□□□ -1.68
GINS3-202ENST00000328514 SYNE2Q8WXH0 6885 aaKnown RBP4.51□□□□□ -1.69
GINS3-202ENST00000328514 FCGBPQ9Y6R7 5405 aaPredicted RBP4.48□□□□□ -1.69
GINS3-202ENST00000328514 USH2AO75445 5202 aa4.48□□□□□ -1.69
GINS3-202ENST00000328514 KRTAP19-8Q3LI54 63 aa4.46□□□□□ -1.69
GINS3-202ENST00000328514 MACF1Q9UPN3 7388 aaKnown RBP4.43□□□□□ -1.7
GINS3-202ENST00000328514 MT2AP02795 61 aa4.4□□□□□ -1.7
GINS3-202ENST00000328514 MT1FP04733 61 aa4.4□□□□□ -1.7
GINS3-202ENST00000328514 KRTAP12-3P60328 96 aa4.4□□□□□ -1.7
GINS3-202ENST00000328514 MT1HP80294 61 aa4.4□□□□□ -1.7
GINS3-202ENST00000328514 KRTAP10-5P60370 271 aa4.39□□□□□ -1.71
GINS3-202ENST00000328514 KRTAP10-12P60413 245 aa4.38□□□□□ -1.71
GINS3-202ENST00000328514 MT1XP80297 61 aa4.38□□□□□ -1.71
GINS3-202ENST00000328514 KRTAP10-10P60014 251 aa4.36□□□□□ -1.71
GINS3-202ENST00000328514 KRTAP9-8Q9BYQ0 159 aa4.36□□□□□ -1.71
GINS3-202ENST00000328514 M0R2T5 61 aa4.36□□□□□ -1.71
GINS3-202ENST00000328514 MT1BP07438 61 aa4.34□□□□□ -1.71
GINS3-202ENST00000328514 KRTAP20-1Q3LI63 56 aa4.34□□□□□ -1.71
GINS3-202ENST00000328514 NEBP20929 6669 aa4.32□□□□□ -1.72
GINS3-202ENST00000328514 KRTAP6-3Q3LI67 103 aa4.29□□□□□ -1.72
GINS3-202ENST00000328514 KRTAP10-7P60409 375 aaPredicted RBP4.24□□□□□ -1.73
GINS3-202ENST00000328514 LOC100996750A0A140TA64 210 aa4.23□□□□□ -1.73
GINS3-202ENST00000328514 KRTAP4-6Q9BYQ5 205 aa4.23□□□□□ -1.73
GINS3-202ENST00000328514 LCE2BO14633 110 aa4.22□□□□□ -1.73
GINS3-202ENST00000328514 LCE3CQ5T5A8 94 aa4.18□□□□□ -1.74
GINS3-202ENST00000328514 KRTAP9-3Q9BYQ3 159 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms