RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TP53AIP1Q9HCN2 124 aa5.45□□□□□ -1.54
HMGB3-201ENST00000325307 Q5W150 140 aa5.45□□□□□ -1.54
HMGB3-201ENST00000325307 HRES1P13985 223 aa5.44□□□□□ -1.54
HMGB3-201ENST00000325307 XP32Q5T750 250 aa5.44□□□□□ -1.54
HMGB3-201ENST00000325307 C20orf166-AS1Q96NR2 134 aa5.42□□□□□ -1.54
HMGB3-201ENST00000325307 A8MUU9 505 aa5.42□□□□□ -1.54
HMGB3-201ENST00000325307 HERC1Q15751 4861 aa5.39□□□□□ -1.55
HMGB3-201ENST00000325307 PCOTHQ58A44 107 aa5.39□□□□□ -1.55
HMGB3-201ENST00000325307 RPL37P61927 97 aaKnown RBP5.39□□□□□ -1.55
HMGB3-201ENST00000325307 MIR22HGQ0VDD5 57 aa5.39□□□□□ -1.55
HMGB3-201ENST00000325307 SPATA8Q6RVD6 105 aa5.36□□□□□ -1.55
HMGB3-201ENST00000325307 LPAP08519 4548 aa5.34□□□□□ -1.55
HMGB3-201ENST00000325307 IGKV2D-30A0A075B6S6 120 aa5.33□□□□□ -1.56
HMGB3-201ENST00000325307 IGKV2-30P06310 120 aa5.33□□□□□ -1.56
HMGB3-201ENST00000325307 KRTAP25-1Q3LHN0 102 aa5.32□□□□□ -1.56
HMGB3-201ENST00000325307 SEC61BP60468 96 aaKnown RBP5.3□□□□□ -1.56
HMGB3-201ENST00000325307 LRP2P98164 4655 aa5.3□□□□□ -1.56
HMGB3-201ENST00000325307 HMCN2Q8NDA2 5059 aa5.27□□□□□ -1.57
HMGB3-201ENST00000325307 DMAC1Q96GE9 116 aa5.27□□□□□ -1.57
HMGB3-201ENST00000325307 ACYP2P14621 99 aa5.24□□□□□ -1.57
HMGB3-201ENST00000325307 A0A1B0GU69 56 aa5.18□□□□□ -1.58
HMGB3-201ENST00000325307 NDUFAF8A1L188 74 aa5.17□□□□□ -1.58
HMGB3-201ENST00000325307 UQCR11O14957 56 aa5.17□□□□□ -1.58
HMGB3-201ENST00000325307 KRTAP4-1Q9BYQ7 146 aa5.16□□□□□ -1.58
HMGB3-201ENST00000325307 LUZP6Q538Z0 58 aa5.14□□□□□ -1.59
HMGB3-201ENST00000325307 KRTAP15-1Q3LI76 137 aa5.11□□□□□ -1.59
HMGB3-201ENST00000325307 UBR4Q5T4S7 5183 aa5.1□□□□□ -1.59
HMGB3-201ENST00000325307 COX6B2Q6YFQ2 88 aa5.1□□□□□ -1.59
HMGB3-201ENST00000325307 KRTAP3-1Q9BYR8 98 aa5.09□□□□□ -1.6
HMGB3-201ENST00000325307 MUC17Q685J3 4493 aa5.08□□□□□ -1.6
HMGB3-201ENST00000325307 MUC2Q02817 5179 aa5.06□□□□□ -1.6
HMGB3-201ENST00000325307 RNF213Q63HN8 5207 aa5.03□□□□□ -1.6
HMGB3-201ENST00000325307 H1FX-AS1Q4G0G2 97 aa5.01□□□□□ -1.61
HMGB3-201ENST00000325307 K7ERS5 55 aa5□□□□□ -1.61
HMGB3-201ENST00000325307 H0YAA0 97 aa4.98□□□□□ -1.61
HMGB3-201ENST00000325307 S4R3F8 94 aa4.98□□□□□ -1.61
HMGB3-201ENST00000325307 KRTAP19-2Q3LHN2 52 aa4.95□□□□□ -1.62
HMGB3-201ENST00000325307 SPINT4Q6UDR6 99 aa4.94□□□□□ -1.62
HMGB3-201ENST00000325307 LCE2CQ5TA81 110 aa4.9□□□□□ -1.62
HMGB3-201ENST00000325307 KRTAP3-3Q9BYR6 98 aa4.89□□□□□ -1.63
HMGB3-201ENST00000325307 CRIPTQ9P021 101 aa4.88□□□□□ -1.63
HMGB3-201ENST00000325307 M0R2T5 61 aa4.88□□□□□ -1.63
HMGB3-201ENST00000325307 FLGP20930 4061 aaPredicted RBP4.85□□□□□ -1.63
HMGB3-201ENST00000325307 MT1HP80294 61 aa4.84□□□□□ -1.64
HMGB3-201ENST00000325307 FAT4Q6V0I7 4981 aa4.83□□□□□ -1.64
HMGB3-201ENST00000325307 A0A1B0GU33 70 aa4.82□□□□□ -1.64
HMGB3-201ENST00000325307 LCE2DQ5TA82 110 aaPredicted RBP4.82□□□□□ -1.64
HMGB3-201ENST00000325307 KRTAP10-6P60371 365 aaPredicted RBP4.77□□□□□ -1.65
HMGB3-201ENST00000325307 KRTAP3-2Q9BYR7 98 aa4.76□□□□□ -1.65
HMGB3-201ENST00000325307 KRTAP13-4Q3LI77 160 aa4.7□□□□□ -1.66
HMGB3-201ENST00000325307 CAMK2N1Q7Z7J9 78 aa4.69□□□□□ -1.66
HMGB3-201ENST00000325307 LCE2AQ5TA79 106 aaPredicted RBP4.69□□□□□ -1.66
HMGB3-201ENST00000325307 KRTAP10-10P60014 251 aa4.64□□□□□ -1.67
HMGB3-201ENST00000325307 LORP23490 312 aaPredicted RBP4.63□□□□□ -1.67
HMGB3-201ENST00000325307 KRTAP9-8Q9BYQ0 159 aa4.63□□□□□ -1.67
HMGB3-201ENST00000325307 C10orf95Q9H7T3 257 aa4.63□□□□□ -1.67
HMGB3-201ENST00000325307 MT2AP02795 61 aa4.62□□□□□ -1.67
HMGB3-201ENST00000325307 R4GN34 69 aa4.6□□□□□ -1.67
HMGB3-201ENST00000325307 MT1FP04733 61 aa4.6□□□□□ -1.67
HMGB3-201ENST00000325307 M0QZ58 72 aa4.59□□□□□ -1.68
HMGB3-201ENST00000325307 A0A0D9SG42 100 aa4.54□□□□□ -1.68
HMGB3-201ENST00000325307 KRTAP12-2P59991 146 aa4.51□□□□□ -1.69
HMGB3-201ENST00000325307 KRTAP12-1P59990 96 aa4.48□□□□□ -1.69
HMGB3-201ENST00000325307 PRO2289Q9P1D8 64 aa4.47□□□□□ -1.69
HMGB3-201ENST00000325307 KRTAP19-1Q8IUB9 90 aa4.46□□□□□ -1.7
HMGB3-201ENST00000325307 SPRR2GQ9BYE4 73 aa4.46□□□□□ -1.7
HMGB3-201ENST00000325307 KRTAP9-3Q9BYQ3 159 aa4.46□□□□□ -1.7
HMGB3-201ENST00000325307 PLAC4Q8WY50 150 aa4.39□□□□□ -1.71
HMGB3-201ENST00000325307 LCE2BO14633 110 aa4.37□□□□□ -1.71
HMGB3-201ENST00000325307 KRTAP19-8Q3LI54 63 aa4.35□□□□□ -1.71
HMGB3-201ENST00000325307 MT1BP07438 61 aa4.31□□□□□ -1.72
HMGB3-201ENST00000325307 KRTAP23-1A1A580 65 aa4.26□□□□□ -1.73
HMGB3-201ENST00000325307 USH2AO75445 5202 aa4.25□□□□□ -1.73
HMGB3-201ENST00000325307 FSIP2Q5CZC0 6907 aa4.23□□□□□ -1.73
HMGB3-201ENST00000325307 KRTAP9-2Q9BYQ4 174 aa4.23□□□□□ -1.73
HMGB3-201ENST00000325307 INE1O15225 51 aa4.17□□□□□ -1.74
HMGB3-201ENST00000325307 MT1XP80297 61 aa4.16□□□□□ -1.74
HMGB3-201ENST00000325307 KRTAP10-5P60370 271 aa4.14□□□□□ -1.75
HMGB3-201ENST00000325307 PP632Q6XCG6 107 aa4.13□□□□□ -1.75
HMGB3-201ENST00000325307 SPRR5A0A1B0GTR4 108 aa4.12□□□□□ -1.75
HMGB3-201ENST00000325307 SSPOA2VEC9 5147 aa4.12□□□□□ -1.75
HMGB3-201ENST00000325307 KRTAP19-6Q3LI70 58 aa4.11□□□□□ -1.75
HMGB3-201ENST00000325307 CRCT1Q9UGL9 99 aa4.06□□□□□ -1.76
HMGB3-201ENST00000325307 TNP1P09430 55 aa4.06□□□□□ -1.76
HMGB3-201ENST00000325307 KRTAP10-7P60409 375 aaPredicted RBP4□□□□□ -1.77
HMGB3-201ENST00000325307 FCGBPQ9Y6R7 5405 aaPredicted RBP3.99□□□□□ -1.77
HMGB3-201ENST00000325307 KRTAP10-12P60413 245 aa3.95□□□□□ -1.78
HMGB3-201ENST00000325307 KRTAP9-6A0A140TA67 174 aa3.93□□□□□ -1.78
HMGB3-201ENST00000325307 LCE3AQ5TA76 89 aa3.89□□□□□ -1.79
HMGB3-201ENST00000325307 KRTAP4-8A0A0G2JLE6 195 aa3.88□□□□□ -1.79
HMGB3-201ENST00000325307 KRTAP4-8Q9BYQ9 185 aa3.88□□□□□ -1.79
HMGB3-201ENST00000325307 KMT2DO14686 5537 aa3.86□□□□□ -1.79
HMGB3-201ENST00000325307 KRTAP8-1Q8IUC2 63 aa3.82□□□□□ -1.8
HMGB3-201ENST00000325307 MACF1Q9UPN3 7388 aaKnown RBP3.8□□□□□ -1.8
HMGB3-201ENST00000325307 KRTAP19-5Q3LI72 72 aa3.76□□□□□ -1.81
HMGB3-201ENST00000325307 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.75□□□□□ -1.81
HMGB3-201ENST00000325307 KRTAP12-3P60328 96 aa3.74□□□□□ -1.81
HMGB3-201ENST00000325307 SYNE2Q8WXH0 6885 aaKnown RBP3.73□□□□□ -1.81
HMGB3-201ENST00000325307 SPRR2FQ96RM1 72 aa3.7□□□□□ -1.82
HMGB3-201ENST00000325307 KRTAP19-7Q3SYF9 63 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 155.3 ms