RNA–Protein interactions for RNA: ENST00000317147.9

CNOT1-201, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CNOT1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-201ENST00000317147 PRO2289Q9P1D8 64 aa2.38□□□□□ -2.03
CNOT1-201ENST00000317147 FAT2Q9NYQ8 4349 aa2.38□□□□□ -2.03
CNOT1-201ENST00000317147 KIAA1109Q2LD37 5005 aa2.37□□□□□ -2.03
CNOT1-201ENST00000317147 KRTAP10-1P60331 282 aa2.36□□□□□ -2.03
CNOT1-201ENST00000317147 PCLOQ9Y6V0 5065 aa2.35□□□□□ -2.03
CNOT1-201ENST00000317147 KRTAP1-4P0C5Y4 121 aa2.35□□□□□ -2.03
CNOT1-201ENST00000317147 KMT2CQ8NEZ4 4911 aaKnown RBP2.33□□□□□ -2.04
CNOT1-201ENST00000317147 VPS13DQ5THJ4 4388 aa2.33□□□□□ -2.04
CNOT1-201ENST00000317147 KRTAP15-1Q3LI76 137 aa2.32□□□□□ -2.04
CNOT1-201ENST00000317147 KRTAP13-4Q3LI77 160 aa2.32□□□□□ -2.04
CNOT1-201ENST00000317147 MYCBP2O75592 4640 aa2.32□□□□□ -2.04
CNOT1-201ENST00000317147 TPRXLQ17RH7 258 aa2.32□□□□□ -2.04
CNOT1-201ENST00000317147 STARD9Q9P2P6 4700 aa2.31□□□□□ -2.04
CNOT1-201ENST00000317147 DNAH17Q9UFH2 4485 aa2.3□□□□□ -2.04
CNOT1-201ENST00000317147 XP32Q5T750 250 aa2.29□□□□□ -2.04
CNOT1-201ENST00000317147 FAT3Q8TDW7 4589 aa2.29□□□□□ -2.04
CNOT1-201ENST00000317147 DNAH11Q96DT5 4516 aa2.28□□□□□ -2.04
CNOT1-201ENST00000317147 FLGP20930 4061 aaPredicted RBP2.28□□□□□ -2.04
CNOT1-201ENST00000317147 KRTAP17-1Q9BYP8 105 aa2.26□□□□□ -2.05
CNOT1-201ENST00000317147 PLECQ15149 4684 aaKnown RBP2.26□□□□□ -2.05
CNOT1-201ENST00000317147 DNAH8Q96JB1 4490 aa2.26□□□□□ -2.05
CNOT1-201ENST00000317147 KRTAP12-1P59990 96 aa2.26□□□□□ -2.05
CNOT1-201ENST00000317147 FAT1Q14517 4588 aa2.24□□□□□ -2.05
CNOT1-201ENST00000317147 KRTAP10-8P60410 259 aa2.23□□□□□ -2.05
CNOT1-201ENST00000317147 KRTAP12-2P59991 146 aa2.23□□□□□ -2.05
CNOT1-201ENST00000317147 KRTAP10-6P60371 365 aaPredicted RBP2.22□□□□□ -2.05
CNOT1-201ENST00000317147 LRP1BQ9NZR2 4599 aa2.2□□□□□ -2.06
CNOT1-201ENST00000317147 RYR3Q15413 4870 aa2.2□□□□□ -2.06
CNOT1-201ENST00000317147 LRP1Q07954 4544 aaKnown RBP2.19□□□□□ -2.06
CNOT1-201ENST00000317147 KRTAP3-1Q9BYR8 98 aa2.19□□□□□ -2.06
CNOT1-201ENST00000317147 PKD1P98161 4303 aa2.19□□□□□ -2.06
CNOT1-201ENST00000317147 DYNC1H1Q14204 4646 aaKnown RBP2.17□□□□□ -2.06
CNOT1-201ENST00000317147 LRP2P98164 4655 aa2.17□□□□□ -2.06
CNOT1-201ENST00000317147 APOBP04114 4563 aaKnown RBP2.17□□□□□ -2.06
CNOT1-201ENST00000317147 KRTAP10-10P60014 251 aa2.17□□□□□ -2.06
CNOT1-201ENST00000317147 PKHD1L1Q86WI1 4243 aa2.16□□□□□ -2.06
CNOT1-201ENST00000317147 DYNC2H1Q8NCM8 4307 aaKnown RBP2.15□□□□□ -2.07
CNOT1-201ENST00000317147 KRTAP3-2Q9BYR7 98 aa2.13□□□□□ -2.07
CNOT1-201ENST00000317147 OBSCNQ5VST9 7968 aa2.13□□□□□ -2.07
CNOT1-201ENST00000317147 SYNE1Q8NF91 8797 aaKnown RBP2.13□□□□□ -2.07
CNOT1-201ENST00000317147 DNAH5Q8TE73 4624 aa2.12□□□□□ -2.07
CNOT1-201ENST00000317147 RNF213Q63HN8 5207 aa2.11□□□□□ -2.07
CNOT1-201ENST00000317147 KRTAP19-4Q3LI73 84 aa2.11□□□□□ -2.07
CNOT1-201ENST00000317147 HERC2O95714 4834 aa2.1□□□□□ -2.07
CNOT1-201ENST00000317147 KRTAP3-3Q9BYR6 98 aa2.09□□□□□ -2.07
CNOT1-201ENST00000317147 MUC2Q02817 5179 aa2.07□□□□□ -2.08
CNOT1-201ENST00000317147 A0A1B0GVY2 172 aa2.06□□□□□ -2.08
CNOT1-201ENST00000317147 EPPK1P58107 5090 aaKnown RBP2.05□□□□□ -2.08
CNOT1-201ENST00000317147 UBR4Q5T4S7 5183 aa2.04□□□□□ -2.08
CNOT1-201ENST00000317147 MT3P25713 68 aa2.04□□□□□ -2.08
CNOT1-201ENST00000317147 TNXBP22105 4242 aa2.03□□□□□ -2.08
CNOT1-201ENST00000317147 SACSQ9NZJ4 4579 aa2.03□□□□□ -2.08
CNOT1-201ENST00000317147 HERC1Q15751 4861 aa2.03□□□□□ -2.08
CNOT1-201ENST00000317147 KRTAP10-4P60372 401 aaPredicted RBP2.02□□□□□ -2.09
CNOT1-201ENST00000317147 RYR2Q92736 4967 aa2.01□□□□□ -2.09
CNOT1-201ENST00000317147 LPAP08519 4548 aa1.97□□□□□ -2.09
CNOT1-201ENST00000317147 FAT4Q6V0I7 4981 aa1.96□□□□□ -2.1
CNOT1-201ENST00000317147 KRTAP10-12P60413 245 aa1.95□□□□□ -2.1
CNOT1-201ENST00000317147 BIRC6Q9NR09 4857 aa1.95□□□□□ -2.1
CNOT1-201ENST00000317147 ABCA13Q86UQ4 5058 aa1.94□□□□□ -2.1
CNOT1-201ENST00000317147 SPRR5A0A1B0GTR4 108 aa1.93□□□□□ -2.1
CNOT1-201ENST00000317147 KRTAP12-3P60328 96 aa1.93□□□□□ -2.1
CNOT1-201ENST00000317147 DSTQ03001 7570 aaKnown RBP1.92□□□□□ -2.1
CNOT1-201ENST00000317147 LORP23490 312 aaPredicted RBP1.9□□□□□ -2.11
CNOT1-201ENST00000317147 MT1HL1P0DM35 61 aa1.89□□□□□ -2.11
CNOT1-201ENST00000317147 KRTAP8-1Q8IUC2 63 aa1.87□□□□□ -2.11
CNOT1-201ENST00000317147 SPRR2GQ9BYE4 73 aa1.85□□□□□ -2.11
CNOT1-201ENST00000317147 MUC17Q685J3 4493 aa1.85□□□□□ -2.11
CNOT1-201ENST00000317147 LCE2DQ5TA82 110 aaPredicted RBP1.85□□□□□ -2.11
CNOT1-201ENST00000317147 FSIP2Q5CZC0 6907 aa1.83□□□□□ -2.12
CNOT1-201ENST00000317147 LCE3AQ5TA76 89 aa1.81□□□□□ -2.12
CNOT1-201ENST00000317147 KRTAP4-5Q9BYR2 181 aa1.81□□□□□ -2.12
CNOT1-201ENST00000317147 KRTAP10-5P60370 271 aa1.79□□□□□ -2.12
CNOT1-201ENST00000317147 HMCN2Q8NDA2 5059 aa1.78□□□□□ -2.12
CNOT1-201ENST00000317147 KRTAP19-2Q3LHN2 52 aa1.77□□□□□ -2.13
CNOT1-201ENST00000317147 KRTAP4-1Q9BYQ7 146 aa1.77□□□□□ -2.13
CNOT1-201ENST00000317147 USH2AO75445 5202 aa1.76□□□□□ -2.13
CNOT1-201ENST00000317147 KRTAP10-7P60409 375 aaPredicted RBP1.75□□□□□ -2.13
CNOT1-201ENST00000317147 LCE3CQ5T5A8 94 aa1.75□□□□□ -2.13
CNOT1-201ENST00000317147 CRCT1Q9UGL9 99 aa1.72□□□□□ -2.13
CNOT1-201ENST00000317147 FCGBPQ9Y6R7 5405 aaPredicted RBP1.7□□□□□ -2.14
CNOT1-201ENST00000317147 KRTAP19-8Q3LI54 63 aa1.7□□□□□ -2.14
CNOT1-201ENST00000317147 KMT2DO14686 5537 aa1.69□□□□□ -2.14
CNOT1-201ENST00000317147 LCE2CQ5TA81 110 aa1.65□□□□□ -2.15
CNOT1-201ENST00000317147 KRTAP19-1Q8IUB9 90 aa1.65□□□□□ -2.15
CNOT1-201ENST00000317147 KRTAP9-6A0A140TA67 174 aa1.64□□□□□ -2.15
CNOT1-201ENST00000317147 MUC12Q9UKN1 5478 aa1.63□□□□□ -2.15
CNOT1-201ENST00000317147 SPRR2FQ96RM1 72 aa1.62□□□□□ -2.15
CNOT1-201ENST00000317147 KRTAP12-4P60329 112 aa1.61□□□□□ -2.15
CNOT1-201ENST00000317147 SPRR2EP22531 72 aa1.61□□□□□ -2.15
CNOT1-201ENST00000317147 SPRR2BP35325 72 aa1.61□□□□□ -2.15
CNOT1-201ENST00000317147 SPRR2AP35326 72 aa1.61□□□□□ -2.15
CNOT1-201ENST00000317147 KRTAP9-2Q9BYQ4 174 aa1.61□□□□□ -2.15
CNOT1-201ENST00000317147 MT2AP02795 61 aa1.6□□□□□ -2.15
CNOT1-201ENST00000317147 MDN1Q9NU22 5596 aa1.6□□□□□ -2.15
CNOT1-201ENST00000317147 LCE2BO14633 110 aa1.6□□□□□ -2.15
CNOT1-201ENST00000317147 KRTAP19-5Q3LI72 72 aa1.6□□□□□ -2.15
CNOT1-201ENST00000317147 SSPOA2VEC9 5147 aa1.59□□□□□ -2.15
CNOT1-201ENST00000317147 MACF1Q9UPN3 7388 aaKnown RBP1.59□□□□□ -2.15
CNOT1-201ENST00000317147 SPRR2DP22532 72 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms