RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 APOBP04114 4563 aaKnown RBP6.75□□□□□ -1.33
RETREG3-201ENST00000309428 PKD1P98161 4303 aa6.74□□□□□ -1.33
RETREG3-201ENST00000309428 S4R3F8 94 aa6.74□□□□□ -1.33
RETREG3-201ENST00000309428 A0A1B0GVY2 172 aa6.66□□□□□ -1.34
RETREG3-201ENST00000309428 KRTAP21-3Q3LHN1 58 aa6.66□□□□□ -1.34
RETREG3-201ENST00000309428 RYR1P21817 5038 aa6.65□□□□□ -1.35
RETREG3-201ENST00000309428 RYR3Q15413 4870 aa6.62□□□□□ -1.35
RETREG3-201ENST00000309428 KRTAP3-1Q9BYR8 98 aa6.62□□□□□ -1.35
RETREG3-201ENST00000309428 C20orf166-AS1Q96NR2 134 aa6.6□□□□□ -1.35
RETREG3-201ENST00000309428 P0C880 135 aa6.58□□□□□ -1.36
RETREG3-201ENST00000309428 M0QZ58 72 aa6.56□□□□□ -1.36
RETREG3-201ENST00000309428 KRTAP10-8P60410 259 aa6.56□□□□□ -1.36
RETREG3-201ENST00000309428 R4GN34 69 aa6.56□□□□□ -1.36
RETREG3-201ENST00000309428 KRTAP10-4P60372 401 aaPredicted RBP6.55□□□□□ -1.36
RETREG3-201ENST00000309428 RYR2Q92736 4967 aa6.55□□□□□ -1.36
RETREG3-201ENST00000309428 J3QL48 77 aa6.54□□□□□ -1.36
RETREG3-201ENST00000309428 XP32Q5T750 250 aa6.53□□□□□ -1.36
RETREG3-201ENST00000309428 CAMK2N1Q7Z7J9 78 aa6.51□□□□□ -1.37
RETREG3-201ENST00000309428 KRTAP17-1Q9BYP8 105 aa6.49□□□□□ -1.37
RETREG3-201ENST00000309428 TPRXLQ17RH7 258 aa6.49□□□□□ -1.37
RETREG3-201ENST00000309428 RPS29P62273 56 aaKnown RBP6.49□□□□□ -1.37
RETREG3-201ENST00000309428 LUZP6Q538Z0 58 aa6.48□□□□□ -1.37
RETREG3-201ENST00000309428 LRP2P98164 4655 aa6.48□□□□□ -1.37
RETREG3-201ENST00000309428 KRTAP13-4Q3LI77 160 aa6.47□□□□□ -1.37
RETREG3-201ENST00000309428 HSPG2P98160 4391 aa6.46□□□□□ -1.37
RETREG3-201ENST00000309428 KRTAP4-5Q9BYR2 181 aa6.45□□□□□ -1.38
RETREG3-201ENST00000309428 EPPK1P58107 5090 aaKnown RBP6.4□□□□□ -1.38
RETREG3-201ENST00000309428 KRTAP12-2P59991 146 aa6.4□□□□□ -1.38
RETREG3-201ENST00000309428 LPAP08519 4548 aa6.4□□□□□ -1.39
RETREG3-201ENST00000309428 PKHD1L1Q86WI1 4243 aa6.36□□□□□ -1.39
RETREG3-201ENST00000309428 KRTAP10-6P60371 365 aaPredicted RBP6.35□□□□□ -1.39
RETREG3-201ENST00000309428 MT1HL1P0DM35 61 aa6.31□□□□□ -1.4
RETREG3-201ENST00000309428 ABCA13Q86UQ4 5058 aa6.3□□□□□ -1.4
RETREG3-201ENST00000309428 MUC2Q02817 5179 aa6.27□□□□□ -1.41
RETREG3-201ENST00000309428 A0A0A0MQY5 61 aa6.25□□□□□ -1.41
RETREG3-201ENST00000309428 KRTAP3-3Q9BYR6 98 aa6.25□□□□□ -1.41
RETREG3-201ENST00000309428 KRTAP12-1P59990 96 aa6.24□□□□□ -1.41
RETREG3-201ENST00000309428 PLAC4Q8WY50 150 aa6.22□□□□□ -1.41
RETREG3-201ENST00000309428 KRTAP3-2Q9BYR7 98 aa6.19□□□□□ -1.42
RETREG3-201ENST00000309428 TNXBP22105 4242 aa6.17□□□□□ -1.42
RETREG3-201ENST00000309428 HERC2O95714 4834 aa6.16□□□□□ -1.42
RETREG3-201ENST00000309428 SEC61BP60468 96 aaKnown RBP6.13□□□□□ -1.43
RETREG3-201ENST00000309428 KRTAP15-1Q3LI76 137 aa6.09□□□□□ -1.43
RETREG3-201ENST00000309428 M0R2T5 61 aa6.08□□□□□ -1.44
RETREG3-201ENST00000309428 LORP23490 312 aaPredicted RBP6.02□□□□□ -1.45
RETREG3-201ENST00000309428 HERC1Q15751 4861 aa6.02□□□□□ -1.45
RETREG3-201ENST00000309428 RNF213Q63HN8 5207 aa6.01□□□□□ -1.45
RETREG3-201ENST00000309428 KRTAP4-1Q9BYQ7 146 aa6□□□□□ -1.45
RETREG3-201ENST00000309428 FAT4Q6V0I7 4981 aa5.98□□□□□ -1.45
RETREG3-201ENST00000309428 TNP1P09430 55 aa5.92□□□□□ -1.46
RETREG3-201ENST00000309428 PP632Q6XCG6 107 aa5.81□□□□□ -1.48
RETREG3-201ENST00000309428 UBR4Q5T4S7 5183 aa5.79□□□□□ -1.48
RETREG3-201ENST00000309428 PCLOQ9Y6V0 5065 aa5.79□□□□□ -1.48
RETREG3-201ENST00000309428 KRTAP10-10P60014 251 aa5.65□□□□□ -1.5
RETREG3-201ENST00000309428 BIRC6Q9NR09 4857 aa5.65□□□□□ -1.51
RETREG3-201ENST00000309428 HMCN2Q8NDA2 5059 aa5.62□□□□□ -1.51
RETREG3-201ENST00000309428 MUC17Q685J3 4493 aa5.59□□□□□ -1.51
RETREG3-201ENST00000309428 FSIP2Q5CZC0 6907 aa5.55□□□□□ -1.52
RETREG3-201ENST00000309428 KRTAP19-2Q3LHN2 52 aa5.41□□□□□ -1.54
RETREG3-201ENST00000309428 FLGP20930 4061 aaPredicted RBP5.41□□□□□ -1.54
RETREG3-201ENST00000309428 USH2AO75445 5202 aa5.39□□□□□ -1.55
RETREG3-201ENST00000309428 LCE3AQ5TA76 89 aa5.33□□□□□ -1.56
RETREG3-201ENST00000309428 MT1HP80294 61 aa5.33□□□□□ -1.56
RETREG3-201ENST00000309428 MT1FP04733 61 aa5.31□□□□□ -1.56
RETREG3-201ENST00000309428 LCE2CQ5TA81 110 aa5.29□□□□□ -1.56
RETREG3-201ENST00000309428 MT2AP02795 61 aa5.26□□□□□ -1.57
RETREG3-201ENST00000309428 KRTAP19-1Q8IUB9 90 aa5.24□□□□□ -1.57
RETREG3-201ENST00000309428 KMT2DO14686 5537 aa5.22□□□□□ -1.57
RETREG3-201ENST00000309428 PRO2289Q9P1D8 64 aa5.13□□□□□ -1.59
RETREG3-201ENST00000309428 KRTAP12-3P60328 96 aa5.12□□□□□ -1.59
RETREG3-201ENST00000309428 KRTAP10-12P60413 245 aa5.1□□□□□ -1.59
RETREG3-201ENST00000309428 SPRR2GQ9BYE4 73 aa5.1□□□□□ -1.59
RETREG3-201ENST00000309428 KRTAP9-8Q9BYQ0 159 aa5.08□□□□□ -1.6
RETREG3-201ENST00000309428 LCE2DQ5TA82 110 aaPredicted RBP5.03□□□□□ -1.6
RETREG3-201ENST00000309428 KRTAP23-1A1A580 65 aa5.01□□□□□ -1.61
RETREG3-201ENST00000309428 INE1O15225 51 aa5.01□□□□□ -1.61
RETREG3-201ENST00000309428 KRTAP10-7P60409 375 aaPredicted RBP5□□□□□ -1.61
RETREG3-201ENST00000309428 MT1BP07438 61 aa4.97□□□□□ -1.61
RETREG3-201ENST00000309428 MT1XP80297 61 aa4.94□□□□□ -1.62
RETREG3-201ENST00000309428 OBSCNQ5VST9 7968 aa4.92□□□□□ -1.62
RETREG3-201ENST00000309428 KRTAP10-5P60370 271 aa4.92□□□□□ -1.62
RETREG3-201ENST00000309428 DSTQ03001 7570 aaKnown RBP4.91□□□□□ -1.62
RETREG3-201ENST00000309428 KRTAP4-8A0A0G2JLE6 195 aa4.89□□□□□ -1.63
RETREG3-201ENST00000309428 KRTAP4-8Q9BYQ9 185 aa4.89□□□□□ -1.63
RETREG3-201ENST00000309428 SPRR5A0A1B0GTR4 108 aa4.89□□□□□ -1.63
RETREG3-201ENST00000309428 CRCT1Q9UGL9 99 aa4.86□□□□□ -1.63
RETREG3-201ENST00000309428 KRTAP9-3Q9BYQ3 159 aa4.84□□□□□ -1.63
RETREG3-201ENST00000309428 KRTAP8-1Q8IUC2 63 aa4.83□□□□□ -1.64
RETREG3-201ENST00000309428 LCE2BO14633 110 aa4.83□□□□□ -1.64
RETREG3-201ENST00000309428 KRTAP19-8Q3LI54 63 aa4.8□□□□□ -1.64
RETREG3-201ENST00000309428 KRTAP19-5Q3LI72 72 aa4.79□□□□□ -1.64
RETREG3-201ENST00000309428 SYNE1Q8NF91 8797 aaKnown RBP4.74□□□□□ -1.65
RETREG3-201ENST00000309428 FCGBPQ9Y6R7 5405 aaPredicted RBP4.73□□□□□ -1.65
RETREG3-201ENST00000309428 KRTAP4-7Q9BYR0 210 aa4.72□□□□□ -1.65
RETREG3-201ENST00000309428 MUC12Q9UKN1 5478 aa4.66□□□□□ -1.66
RETREG3-201ENST00000309428 LCE3CQ5T5A8 94 aa4.62□□□□□ -1.67
RETREG3-201ENST00000309428 SSPOA2VEC9 5147 aa4.6□□□□□ -1.67
RETREG3-201ENST00000309428 LCE2AQ5TA79 106 aaPredicted RBP4.51□□□□□ -1.69
RETREG3-201ENST00000309428 SYNE2Q8WXH0 6885 aaKnown RBP4.5□□□□□ -1.69
RETREG3-201ENST00000309428 KRTAP4-3Q9BYR4 195 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms