RNA–Protein interactions for RNA: ENST00000301280.9

CHAF1A-201, Transcript of chromatin assembly factor 1 subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHAF1A, Length 3,339 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHAF1A-201ENST00000301280 KRTAP3-1Q9BYR8 98 aa8.26□□□□□ -1.09
CHAF1A-201ENST00000301280 KRTAP17-1Q9BYP8 105 aa8.25□□□□□ -1.09
CHAF1A-201ENST00000301280 LINC01554Q52M75 96 aa8.24□□□□□ -1.09
CHAF1A-201ENST00000301280 CSAG1Q6PB30 78 aa8.22□□□□□ -1.09
CHAF1A-201ENST00000301280 A0A1B0GU33 70 aa8.21□□□□□ -1.1
CHAF1A-201ENST00000301280 H0YAA0 97 aa8.18□□□□□ -1.1
CHAF1A-201ENST00000301280 KRTAP10-8P60410 259 aa8.16□□□□□ -1.1
CHAF1A-201ENST00000301280 COX6B2Q6YFQ2 88 aa8.14□□□□□ -1.11
CHAF1A-201ENST00000301280 EPPK1P58107 5090 aaKnown RBP8.14□□□□□ -1.11
CHAF1A-201ENST00000301280 LRP2P98164 4655 aa8.14□□□□□ -1.11
CHAF1A-201ENST00000301280 XP32Q5T750 250 aa8.13□□□□□ -1.11
CHAF1A-201ENST00000301280 KRTAP4-5Q9BYR2 181 aa8.09□□□□□ -1.11
CHAF1A-201ENST00000301280 LPAP08519 4548 aa8.08□□□□□ -1.12
CHAF1A-201ENST00000301280 H1FX-AS1Q4G0G2 97 aa8.04□□□□□ -1.12
CHAF1A-201ENST00000301280 RPL37P61927 97 aaKnown RBP8.03□□□□□ -1.12
CHAF1A-201ENST00000301280 J3QL48 77 aa8.01□□□□□ -1.13
CHAF1A-201ENST00000301280 S4R3F8 94 aa8.01□□□□□ -1.13
CHAF1A-201ENST00000301280 ABCA13Q86UQ4 5058 aa7.99□□□□□ -1.13
CHAF1A-201ENST00000301280 SPINT4Q6UDR6 99 aa7.99□□□□□ -1.13
CHAF1A-201ENST00000301280 K7ERS5 55 aa7.98□□□□□ -1.13
CHAF1A-201ENST00000301280 P0C880 135 aa7.96□□□□□ -1.14
CHAF1A-201ENST00000301280 MT1HL1P0DM35 61 aa7.94□□□□□ -1.14
CHAF1A-201ENST00000301280 MUC2Q02817 5179 aa7.9□□□□□ -1.14
CHAF1A-201ENST00000301280 KRTAP25-1Q3LHN0 102 aa7.9□□□□□ -1.14
CHAF1A-201ENST00000301280 KRTAP13-4Q3LI77 160 aa7.87□□□□□ -1.15
CHAF1A-201ENST00000301280 KRTAP3-3Q9BYR6 98 aa7.84□□□□□ -1.15
CHAF1A-201ENST00000301280 A0A0A0MQY5 61 aa7.81□□□□□ -1.16
CHAF1A-201ENST00000301280 KRTAP10-6P60371 365 aaPredicted RBP7.78□□□□□ -1.16
CHAF1A-201ENST00000301280 C10orf95Q9H7T3 257 aa7.77□□□□□ -1.17
CHAF1A-201ENST00000301280 HERC2O95714 4834 aa7.75□□□□□ -1.17
CHAF1A-201ENST00000301280 ROMO1P60602 79 aa7.75□□□□□ -1.17
CHAF1A-201ENST00000301280 KRTAP3-2Q9BYR7 98 aa7.71□□□□□ -1.17
CHAF1A-201ENST00000301280 M0QZ58 72 aa7.68□□□□□ -1.18
CHAF1A-201ENST00000301280 R4GN34 69 aa7.64□□□□□ -1.19
CHAF1A-201ENST00000301280 KRTAP12-2P59991 146 aa7.63□□□□□ -1.19
CHAF1A-201ENST00000301280 TPRXLQ17RH7 258 aa7.63□□□□□ -1.19
CHAF1A-201ENST00000301280 HERC1Q15751 4861 aa7.6□□□□□ -1.19
CHAF1A-201ENST00000301280 SEC61BP60468 96 aaKnown RBP7.57□□□□□ -1.2
CHAF1A-201ENST00000301280 KRTAP4-1Q9BYQ7 146 aa7.54□□□□□ -1.2
CHAF1A-201ENST00000301280 RNF213Q63HN8 5207 aa7.53□□□□□ -1.2
CHAF1A-201ENST00000301280 MUC17Q685J3 4493 aa7.52□□□□□ -1.21
CHAF1A-201ENST00000301280 FAT4Q6V0I7 4981 aa7.51□□□□□ -1.21
CHAF1A-201ENST00000301280 LORP23490 312 aaPredicted RBP7.5□□□□□ -1.21
CHAF1A-201ENST00000301280 KRTAP12-1P59990 96 aa7.44□□□□□ -1.22
CHAF1A-201ENST00000301280 M0R2T5 61 aa7.39□□□□□ -1.23
CHAF1A-201ENST00000301280 CAMK2N1Q7Z7J9 78 aa7.39□□□□□ -1.23
CHAF1A-201ENST00000301280 PCLOQ9Y6V0 5065 aa7.37□□□□□ -1.23
CHAF1A-201ENST00000301280 NDUFAF8A1L188 74 aa7.36□□□□□ -1.23
CHAF1A-201ENST00000301280 KRTAP15-1Q3LI76 137 aa7.33□□□□□ -1.24
CHAF1A-201ENST00000301280 KRTAP19-2Q3LHN2 52 aa7.29□□□□□ -1.24
CHAF1A-201ENST00000301280 UBR4Q5T4S7 5183 aa7.29□□□□□ -1.24
CHAF1A-201ENST00000301280 BIRC6Q9NR09 4857 aa7.18□□□□□ -1.26
CHAF1A-201ENST00000301280 FLGP20930 4061 aaPredicted RBP7.13□□□□□ -1.27
CHAF1A-201ENST00000301280 LUZP6Q538Z0 58 aa7.11□□□□□ -1.27
CHAF1A-201ENST00000301280 HMCN2Q8NDA2 5059 aa7.07□□□□□ -1.28
CHAF1A-201ENST00000301280 KRTAP10-10P60014 251 aa6.95□□□□□ -1.3
CHAF1A-201ENST00000301280 PLAC4Q8WY50 150 aa6.86□□□□□ -1.31
CHAF1A-201ENST00000301280 LCE2CQ5TA81 110 aa6.78□□□□□ -1.32
CHAF1A-201ENST00000301280 TNP1P09430 55 aa6.78□□□□□ -1.32
CHAF1A-201ENST00000301280 FSIP2Q5CZC0 6907 aa6.76□□□□□ -1.33
CHAF1A-201ENST00000301280 USH2AO75445 5202 aa6.74□□□□□ -1.33
CHAF1A-201ENST00000301280 MT1HP80294 61 aa6.7□□□□□ -1.34
CHAF1A-201ENST00000301280 MT1FP04733 61 aa6.65□□□□□ -1.35
CHAF1A-201ENST00000301280 PP632Q6XCG6 107 aa6.64□□□□□ -1.35
CHAF1A-201ENST00000301280 KRTAP23-1A1A580 65 aa6.63□□□□□ -1.35
CHAF1A-201ENST00000301280 SPRR2GQ9BYE4 73 aa6.63□□□□□ -1.35
CHAF1A-201ENST00000301280 KRTAP19-1Q8IUB9 90 aa6.59□□□□□ -1.35
CHAF1A-201ENST00000301280 MT2AP02795 61 aa6.59□□□□□ -1.35
CHAF1A-201ENST00000301280 KMT2DO14686 5537 aa6.5□□□□□ -1.37
CHAF1A-201ENST00000301280 LCE3AQ5TA76 89 aa6.48□□□□□ -1.37
CHAF1A-201ENST00000301280 KRTAP9-8Q9BYQ0 159 aa6.43□□□□□ -1.38
CHAF1A-201ENST00000301280 KRTAP19-8Q3LI54 63 aa6.38□□□□□ -1.39
CHAF1A-201ENST00000301280 SPRR5A0A1B0GTR4 108 aa6.36□□□□□ -1.39
CHAF1A-201ENST00000301280 MT1BP07438 61 aa6.25□□□□□ -1.41
CHAF1A-201ENST00000301280 KRTAP10-7P60409 375 aaPredicted RBP6.23□□□□□ -1.41
CHAF1A-201ENST00000301280 KRTAP10-12P60413 245 aa6.2□□□□□ -1.42
CHAF1A-201ENST00000301280 MT1XP80297 61 aa6.2□□□□□ -1.42
CHAF1A-201ENST00000301280 KRTAP10-5P60370 271 aa6.19□□□□□ -1.42
CHAF1A-201ENST00000301280 KRTAP9-3Q9BYQ3 159 aa6.16□□□□□ -1.42
CHAF1A-201ENST00000301280 KRTAP8-1Q8IUC2 63 aa6.12□□□□□ -1.43
CHAF1A-201ENST00000301280 KRTAP12-3P60328 96 aa6.12□□□□□ -1.43
CHAF1A-201ENST00000301280 KRTAP4-8A0A0G2JLE6 195 aa6.09□□□□□ -1.44
CHAF1A-201ENST00000301280 LCE2BO14633 110 aa6.09□□□□□ -1.44
CHAF1A-201ENST00000301280 KRTAP4-8Q9BYQ9 185 aa6.09□□□□□ -1.44
CHAF1A-201ENST00000301280 PRO2289Q9P1D8 64 aa6.07□□□□□ -1.44
CHAF1A-201ENST00000301280 DSTQ03001 7570 aaKnown RBP5.99□□□□□ -1.45
CHAF1A-201ENST00000301280 KRTAP19-5Q3LI72 72 aa5.94□□□□□ -1.46
CHAF1A-201ENST00000301280 LCE2AQ5TA79 106 aaPredicted RBP5.89□□□□□ -1.47
CHAF1A-201ENST00000301280 KRTAP4-7Q9BYR0 210 aa5.85□□□□□ -1.47
CHAF1A-201ENST00000301280 OBSCNQ5VST9 7968 aa5.83□□□□□ -1.48
CHAF1A-201ENST00000301280 SSPOA2VEC9 5147 aa5.82□□□□□ -1.48
CHAF1A-201ENST00000301280 MUC12Q9UKN1 5478 aa5.8□□□□□ -1.48
CHAF1A-201ENST00000301280 FCGBPQ9Y6R7 5405 aaPredicted RBP5.8□□□□□ -1.48
CHAF1A-201ENST00000301280 CRCT1Q9UGL9 99 aa5.75□□□□□ -1.49
CHAF1A-201ENST00000301280 SYNE1Q8NF91 8797 aaKnown RBP5.71□□□□□ -1.5
CHAF1A-201ENST00000301280 INE1O15225 51 aa5.62□□□□□ -1.51
CHAF1A-201ENST00000301280 LCE3CQ5T5A8 94 aa5.62□□□□□ -1.51
CHAF1A-201ENST00000301280 KRTAP19-4Q3LI73 84 aa5.52□□□□□ -1.53
CHAF1A-201ENST00000301280 KRTAP9-6A8MVA2 160 aa5.51□□□□□ -1.53
CHAF1A-201ENST00000301280 KRTAP19-7Q3SYF9 63 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms