RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SMR3BP02814 79 aaPredicted RBP7.16□□□□□ -1.26
SKA3-201ENST00000298260 KRTAP13-4Q3LI77 160 aa7.14□□□□□ -1.27
SKA3-201ENST00000298260 NDUFAF8A1L188 74 aa7.14□□□□□ -1.27
SKA3-201ENST00000298260 APOBP04114 4563 aaKnown RBP7.09□□□□□ -1.27
SKA3-201ENST00000298260 EPPK1P58107 5090 aaKnown RBP7.07□□□□□ -1.28
SKA3-201ENST00000298260 RPL37P61927 97 aaKnown RBP7.05□□□□□ -1.28
SKA3-201ENST00000298260 KIAA1109Q2LD37 5005 aa7.04□□□□□ -1.28
SKA3-201ENST00000298260 KRTAP10-6P60371 365 aaPredicted RBP7.04□□□□□ -1.28
SKA3-201ENST00000298260 C20orf166-AS1Q96NR2 134 aa7.02□□□□□ -1.29
SKA3-201ENST00000298260 A0A1B0GVY2 172 aa7□□□□□ -1.29
SKA3-201ENST00000298260 KRTAP15-1Q3LI76 137 aa6.98□□□□□ -1.29
SKA3-201ENST00000298260 LRP1Q07954 4544 aaKnown RBP6.98□□□□□ -1.29
SKA3-201ENST00000298260 KRTAP3-3Q9BYR6 98 aa6.96□□□□□ -1.3
SKA3-201ENST00000298260 KRTAP3-2Q9BYR7 98 aa6.94□□□□□ -1.3
SKA3-201ENST00000298260 MYCBP2O75592 4640 aa6.94□□□□□ -1.3
SKA3-201ENST00000298260 HSPG2P98160 4391 aa6.93□□□□□ -1.3
SKA3-201ENST00000298260 KRTAP12-2P59991 146 aa6.92□□□□□ -1.3
SKA3-201ENST00000298260 KRTAP17-1Q9BYP8 105 aa6.89□□□□□ -1.31
SKA3-201ENST00000298260 S4R3F8 94 aa6.88□□□□□ -1.31
SKA3-201ENST00000298260 KRTAP10-8P60410 259 aa6.86□□□□□ -1.31
SKA3-201ENST00000298260 RYR1P21817 5038 aa6.86□□□□□ -1.31
SKA3-201ENST00000298260 RPS29P62273 56 aaKnown RBP6.82□□□□□ -1.32
SKA3-201ENST00000298260 PKHD1L1Q86WI1 4243 aa6.79□□□□□ -1.32
SKA3-201ENST00000298260 KRTAP10-4P60372 401 aaPredicted RBP6.77□□□□□ -1.32
SKA3-201ENST00000298260 KRTAP12-1P59990 96 aa6.76□□□□□ -1.33
SKA3-201ENST00000298260 Q5VSD8 79 aa6.76□□□□□ -1.33
SKA3-201ENST00000298260 FAT3Q8TDW7 4589 aa6.74□□□□□ -1.33
SKA3-201ENST00000298260 KRTAP4-5Q9BYR2 181 aa6.7□□□□□ -1.34
SKA3-201ENST00000298260 LPAP08519 4548 aa6.69□□□□□ -1.34
SKA3-201ENST00000298260 XP32Q5T750 250 aa6.68□□□□□ -1.34
SKA3-201ENST00000298260 ABCA13Q86UQ4 5058 aa6.67□□□□□ -1.34
SKA3-201ENST00000298260 A0A0A0MQY5 61 aa6.65□□□□□ -1.35
SKA3-201ENST00000298260 TNXBP22105 4242 aa6.64□□□□□ -1.35
SKA3-201ENST00000298260 HERC2O95714 4834 aa6.6□□□□□ -1.35
SKA3-201ENST00000298260 BIRC6Q9NR09 4857 aa6.52□□□□□ -1.37
SKA3-201ENST00000298260 LUZP6Q538Z0 58 aa6.49□□□□□ -1.37
SKA3-201ENST00000298260 LRP2P98164 4655 aa6.49□□□□□ -1.37
SKA3-201ENST00000298260 PLAC4Q8WY50 150 aa6.49□□□□□ -1.37
SKA3-201ENST00000298260 PCLOQ9Y6V0 5065 aa6.47□□□□□ -1.37
SKA3-201ENST00000298260 M0QZ58 72 aa6.46□□□□□ -1.37
SKA3-201ENST00000298260 HERC1Q15751 4861 aa6.46□□□□□ -1.38
SKA3-201ENST00000298260 MT1HL1P0DM35 61 aa6.45□□□□□ -1.38
SKA3-201ENST00000298260 LORP23490 312 aaPredicted RBP6.38□□□□□ -1.39
SKA3-201ENST00000298260 R4GN34 69 aa6.37□□□□□ -1.39
SKA3-201ENST00000298260 J3QL48 77 aa6.31□□□□□ -1.4
SKA3-201ENST00000298260 MUC2Q02817 5179 aa6.3□□□□□ -1.4
SKA3-201ENST00000298260 RNF213Q63HN8 5207 aa6.13□□□□□ -1.43
SKA3-201ENST00000298260 CAMK2N1Q7Z7J9 78 aa6.12□□□□□ -1.43
SKA3-201ENST00000298260 UBR4Q5T4S7 5183 aa6.1□□□□□ -1.43
SKA3-201ENST00000298260 HMCN2Q8NDA2 5059 aa6.09□□□□□ -1.43
SKA3-201ENST00000298260 FAT4Q6V0I7 4981 aa6.01□□□□□ -1.45
SKA3-201ENST00000298260 PP632Q6XCG6 107 aa6□□□□□ -1.45
SKA3-201ENST00000298260 KRTAP4-1Q9BYQ7 146 aa5.99□□□□□ -1.45
SKA3-201ENST00000298260 MUC17Q685J3 4493 aa5.96□□□□□ -1.46
SKA3-201ENST00000298260 SEC61BP60468 96 aaKnown RBP5.85□□□□□ -1.47
SKA3-201ENST00000298260 TNP1P09430 55 aa5.84□□□□□ -1.48
SKA3-201ENST00000298260 SPRR5A0A1B0GTR4 108 aa5.83□□□□□ -1.48
SKA3-201ENST00000298260 KRTAP19-2Q3LHN2 52 aa5.76□□□□□ -1.49
SKA3-201ENST00000298260 FLGP20930 4061 aaPredicted RBP5.65□□□□□ -1.5
SKA3-201ENST00000298260 LCE3AQ5TA76 89 aa5.61□□□□□ -1.51
SKA3-201ENST00000298260 PRO2289Q9P1D8 64 aa5.6□□□□□ -1.51
SKA3-201ENST00000298260 KRTAP23-1A1A580 65 aa5.57□□□□□ -1.52
SKA3-201ENST00000298260 LCE2CQ5TA81 110 aa5.56□□□□□ -1.52
SKA3-201ENST00000298260 M0R2T5 61 aa5.54□□□□□ -1.52
SKA3-201ENST00000298260 MT1HP80294 61 aa5.45□□□□□ -1.54
SKA3-201ENST00000298260 KRTAP19-1Q8IUB9 90 aa5.43□□□□□ -1.54
SKA3-201ENST00000298260 INE1O15225 51 aa5.38□□□□□ -1.55
SKA3-201ENST00000298260 SPRR2GQ9BYE4 73 aa5.35□□□□□ -1.55
SKA3-201ENST00000298260 FSIP2Q5CZC0 6907 aa5.31□□□□□ -1.56
SKA3-201ENST00000298260 USH2AO75445 5202 aa5.31□□□□□ -1.56
SKA3-201ENST00000298260 KRTAP8-1Q8IUC2 63 aa5.29□□□□□ -1.56
SKA3-201ENST00000298260 KRTAP10-10P60014 251 aa5.28□□□□□ -1.56
SKA3-201ENST00000298260 KRTAP9-6A0A140TA67 174 aa5.28□□□□□ -1.56
SKA3-201ENST00000298260 MT1FP04733 61 aa5.27□□□□□ -1.57
SKA3-201ENST00000298260 KRTAP12-3P60328 96 aa5.25□□□□□ -1.57
SKA3-201ENST00000298260 MT2AP02795 61 aa5.25□□□□□ -1.57
SKA3-201ENST00000298260 KRTAP9-8Q9BYQ0 159 aa5.24□□□□□ -1.57
SKA3-201ENST00000298260 KRTAP10-12P60413 245 aa5.23□□□□□ -1.57
SKA3-201ENST00000298260 KRTAP9-2Q9BYQ4 174 aa5.19□□□□□ -1.58
SKA3-201ENST00000298260 KRTAP10-5P60370 271 aa5.17□□□□□ -1.58
SKA3-201ENST00000298260 KRTAP10-7P60409 375 aaPredicted RBP5.15□□□□□ -1.59
SKA3-201ENST00000298260 MT1XP80297 61 aa5.15□□□□□ -1.59
SKA3-201ENST00000298260 KMT2DO14686 5537 aa5.15□□□□□ -1.59
SKA3-201ENST00000298260 LCE2AQ5TA79 106 aaPredicted RBP5.12□□□□□ -1.59
SKA3-201ENST00000298260 MT1BP07438 61 aa5.08□□□□□ -1.6
SKA3-201ENST00000298260 KRTAP9-3Q9BYQ3 159 aa5.02□□□□□ -1.61
SKA3-201ENST00000298260 KRTAP19-8Q3LI54 63 aa5□□□□□ -1.61
SKA3-201ENST00000298260 LCE2BO14633 110 aa4.98□□□□□ -1.61
SKA3-201ENST00000298260 KRTAP9-6A8MVA2 160 aa4.97□□□□□ -1.61
SKA3-201ENST00000298260 KRTAP19-5Q3LI72 72 aa4.96□□□□□ -1.61
SKA3-201ENST00000298260 LCE2DQ5TA82 110 aaPredicted RBP4.96□□□□□ -1.62
SKA3-201ENST00000298260 LCE3CQ5T5A8 94 aa4.94□□□□□ -1.62
SKA3-201ENST00000298260 SSPOA2VEC9 5147 aa4.9□□□□□ -1.62
SKA3-201ENST00000298260 KRTAP4-7Q9BYR0 210 aa4.88□□□□□ -1.63
SKA3-201ENST00000298260 CRCT1Q9UGL9 99 aa4.86□□□□□ -1.63
SKA3-201ENST00000298260 KRTAP4-8A0A0G2JLE6 195 aa4.84□□□□□ -1.63
SKA3-201ENST00000298260 KRTAP4-8Q9BYQ9 185 aa4.84□□□□□ -1.63
SKA3-201ENST00000298260 KRTAP2-3P0C7H8 128 aa4.73□□□□□ -1.65
SKA3-201ENST00000298260 KRTAP2-4Q9BYR9 128 aa4.73□□□□□ -1.65
SKA3-201ENST00000298260 KRTAP2-1Q9BYU5 128 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms