RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 ABCA13Q86UQ4 5058 aa8.47□□□□□ -1.05
LSM6-201ENST00000296581 A0A1B0GU69 56 aa8.41□□□□□ -1.06
LSM6-201ENST00000296581 MIR22HGQ0VDD5 57 aa8.41□□□□□ -1.06
LSM6-201ENST00000296581 IGKV2-30P06310 120 aa8.4□□□□□ -1.06
LSM6-201ENST00000296581 ACYP2P14621 99 aa8.37□□□□□ -1.07
LSM6-201ENST00000296581 UQCR11O14957 56 aa8.35□□□□□ -1.07
LSM6-201ENST00000296581 XP32Q5T750 250 aa8.33□□□□□ -1.08
LSM6-201ENST00000296581 J3QL48 77 aa8.33□□□□□ -1.08
LSM6-201ENST00000296581 IGKV2D-30A0A075B6S6 120 aa8.31□□□□□ -1.08
LSM6-201ENST00000296581 RPL37P61927 97 aaKnown RBP8.3□□□□□ -1.08
LSM6-201ENST00000296581 ROMO1P60602 79 aa8.29□□□□□ -1.08
LSM6-201ENST00000296581 TPRXLQ17RH7 258 aa8.29□□□□□ -1.08
LSM6-201ENST00000296581 DMAC1Q96GE9 116 aa8.28□□□□□ -1.08
LSM6-201ENST00000296581 KRTAP25-1Q3LHN0 102 aa8.2□□□□□ -1.1
LSM6-201ENST00000296581 PCLOQ9Y6V0 5065 aa8.14□□□□□ -1.11
LSM6-201ENST00000296581 LPAP08519 4548 aa8.09□□□□□ -1.11
LSM6-201ENST00000296581 P0C880 135 aa8.09□□□□□ -1.11
LSM6-201ENST00000296581 LRP2P98164 4655 aa8.09□□□□□ -1.11
LSM6-201ENST00000296581 KRTAP3-1Q9BYR8 98 aa8.02□□□□□ -1.13
LSM6-201ENST00000296581 COX6B2Q6YFQ2 88 aa8.01□□□□□ -1.13
LSM6-201ENST00000296581 SEC61BP60468 96 aaKnown RBP7.99□□□□□ -1.13
LSM6-201ENST00000296581 H0YAA0 97 aa7.95□□□□□ -1.14
LSM6-201ENST00000296581 HERC1Q15751 4861 aa7.94□□□□□ -1.14
LSM6-201ENST00000296581 HMCN2Q8NDA2 5059 aa7.91□□□□□ -1.14
LSM6-201ENST00000296581 MUC17Q685J3 4493 aa7.88□□□□□ -1.15
LSM6-201ENST00000296581 CRIPTQ9P021 101 aa7.87□□□□□ -1.15
LSM6-201ENST00000296581 A0A0A0MQY5 61 aa7.85□□□□□ -1.15
LSM6-201ENST00000296581 KRTAP4-1Q9BYQ7 146 aa7.85□□□□□ -1.15
LSM6-201ENST00000296581 H1FX-AS1Q4G0G2 97 aa7.79□□□□□ -1.16
LSM6-201ENST00000296581 NDUFAF8A1L188 74 aa7.76□□□□□ -1.17
LSM6-201ENST00000296581 A0A1B0GU33 70 aa7.75□□□□□ -1.17
LSM6-201ENST00000296581 SPINT4Q6UDR6 99 aa7.75□□□□□ -1.17
LSM6-201ENST00000296581 S4R3F8 94 aa7.74□□□□□ -1.17
LSM6-201ENST00000296581 KRTAP3-3Q9BYR6 98 aa7.73□□□□□ -1.17
LSM6-201ENST00000296581 K7ERS5 55 aa7.69□□□□□ -1.18
LSM6-201ENST00000296581 KRTAP19-2Q3LHN2 52 aa7.67□□□□□ -1.18
LSM6-201ENST00000296581 KRTAP15-1Q3LI76 137 aa7.67□□□□□ -1.18
LSM6-201ENST00000296581 MUC2Q02817 5179 aa7.56□□□□□ -1.2
LSM6-201ENST00000296581 UBR4Q5T4S7 5183 aa7.51□□□□□ -1.21
LSM6-201ENST00000296581 RNF213Q63HN8 5207 aa7.5□□□□□ -1.21
LSM6-201ENST00000296581 KRTAP3-2Q9BYR7 98 aa7.48□□□□□ -1.21
LSM6-201ENST00000296581 KRTAP10-6P60371 365 aaPredicted RBP7.47□□□□□ -1.21
LSM6-201ENST00000296581 C10orf95Q9H7T3 257 aa7.47□□□□□ -1.21
LSM6-201ENST00000296581 FLGP20930 4061 aaPredicted RBP7.45□□□□□ -1.22
LSM6-201ENST00000296581 LCE2CQ5TA81 110 aa7.45□□□□□ -1.22
LSM6-201ENST00000296581 LUZP6Q538Z0 58 aa7.37□□□□□ -1.23
LSM6-201ENST00000296581 A0A0D9SG42 100 aa7.29□□□□□ -1.24
LSM6-201ENST00000296581 MT1HP80294 61 aa7.28□□□□□ -1.24
LSM6-201ENST00000296581 KRTAP13-4Q3LI77 160 aa7.28□□□□□ -1.24
LSM6-201ENST00000296581 FAT4Q6V0I7 4981 aa7.26□□□□□ -1.25
LSM6-201ENST00000296581 M0QZ58 72 aa7.21□□□□□ -1.26
LSM6-201ENST00000296581 M0R2T5 61 aa7.17□□□□□ -1.26
LSM6-201ENST00000296581 LORP23490 312 aaPredicted RBP7.16□□□□□ -1.26
LSM6-201ENST00000296581 R4GN34 69 aa7.13□□□□□ -1.27
LSM6-201ENST00000296581 KRTAP12-2P59991 146 aa7.11□□□□□ -1.27
LSM6-201ENST00000296581 KRTAP9-8Q9BYQ0 159 aa7.03□□□□□ -1.28
LSM6-201ENST00000296581 MT2AP02795 61 aa7.02□□□□□ -1.29
LSM6-201ENST00000296581 KRTAP12-1P59990 96 aa7□□□□□ -1.29
LSM6-201ENST00000296581 MT1FP04733 61 aa6.97□□□□□ -1.29
LSM6-201ENST00000296581 LCE2AQ5TA79 106 aaPredicted RBP6.96□□□□□ -1.3
LSM6-201ENST00000296581 PLAC4Q8WY50 150 aa6.95□□□□□ -1.3
LSM6-201ENST00000296581 KRTAP10-10P60014 251 aa6.93□□□□□ -1.3
LSM6-201ENST00000296581 SPRR2GQ9BYE4 73 aa6.92□□□□□ -1.3
LSM6-201ENST00000296581 KRTAP19-1Q8IUB9 90 aa6.89□□□□□ -1.31
LSM6-201ENST00000296581 KRTAP9-3Q9BYQ3 159 aa6.77□□□□□ -1.33
LSM6-201ENST00000296581 KRTAP19-8Q3LI54 63 aa6.73□□□□□ -1.33
LSM6-201ENST00000296581 CAMK2N1Q7Z7J9 78 aa6.68□□□□□ -1.34
LSM6-201ENST00000296581 MT1BP07438 61 aa6.63□□□□□ -1.35
LSM6-201ENST00000296581 LCE2BO14633 110 aa6.57□□□□□ -1.36
LSM6-201ENST00000296581 PP632Q6XCG6 107 aa6.5□□□□□ -1.37
LSM6-201ENST00000296581 PRO2289Q9P1D8 64 aa6.44□□□□□ -1.38
LSM6-201ENST00000296581 MT1XP80297 61 aa6.43□□□□□ -1.38
LSM6-201ENST00000296581 KRTAP10-5P60370 271 aa6.42□□□□□ -1.38
LSM6-201ENST00000296581 TNP1P09430 55 aa6.38□□□□□ -1.39
LSM6-201ENST00000296581 SPRR5A0A1B0GTR4 108 aa6.38□□□□□ -1.39
LSM6-201ENST00000296581 USH2AO75445 5202 aa6.37□□□□□ -1.39
LSM6-201ENST00000296581 LCE2DQ5TA82 110 aaPredicted RBP6.28□□□□□ -1.4
LSM6-201ENST00000296581 KRTAP23-1A1A580 65 aa6.24□□□□□ -1.41
LSM6-201ENST00000296581 INE1O15225 51 aa6.18□□□□□ -1.42
LSM6-201ENST00000296581 KRTAP10-7P60409 375 aaPredicted RBP6.16□□□□□ -1.42
LSM6-201ENST00000296581 SSPOA2VEC9 5147 aa6.16□□□□□ -1.42
LSM6-201ENST00000296581 KRTAP19-6Q3LI70 58 aa6.15□□□□□ -1.42
LSM6-201ENST00000296581 LCE3AQ5TA76 89 aa6.11□□□□□ -1.43
LSM6-201ENST00000296581 KRTAP10-12P60413 245 aa6.1□□□□□ -1.43
LSM6-201ENST00000296581 FSIP2Q5CZC0 6907 aa6.04□□□□□ -1.44
LSM6-201ENST00000296581 KRTAP8-1Q8IUC2 63 aa6.01□□□□□ -1.45
LSM6-201ENST00000296581 KRTAP9-2Q9BYQ4 174 aa5.97□□□□□ -1.45
LSM6-201ENST00000296581 KRTAP4-8A0A0G2JLE6 195 aa5.9□□□□□ -1.46
LSM6-201ENST00000296581 KRTAP4-8Q9BYQ9 185 aa5.9□□□□□ -1.46
LSM6-201ENST00000296581 FCGBPQ9Y6R7 5405 aaPredicted RBP5.87□□□□□ -1.47
LSM6-201ENST00000296581 KRTAP12-3P60328 96 aa5.86□□□□□ -1.47
LSM6-201ENST00000296581 KMT2DO14686 5537 aa5.84□□□□□ -1.47
LSM6-201ENST00000296581 KRTAP19-5Q3LI72 72 aa5.81□□□□□ -1.48
LSM6-201ENST00000296581 CRCT1Q9UGL9 99 aa5.77□□□□□ -1.49
LSM6-201ENST00000296581 KRTAP19-7Q3SYF9 63 aa5.74□□□□□ -1.49
LSM6-201ENST00000296581 MT1EP04732 61 aa5.63□□□□□ -1.51
LSM6-201ENST00000296581 MACF1Q9UPN3 7388 aaKnown RBP5.57□□□□□ -1.52
LSM6-201ENST00000296581 MT1LQ93083 61 aa5.53□□□□□ -1.52
LSM6-201ENST00000296581 KRTAP19-4Q3LI73 84 aa5.5□□□□□ -1.53
LSM6-201ENST00000296581 LCE3CQ5T5A8 94 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms