RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 CDC42SE1Q9NRR8 79 aa4.69□□□□□ -1.66
PTPDC1-201ENST00000288976 C20orf166-AS1Q96NR2 134 aa4.67□□□□□ -1.66
PTPDC1-201ENST00000288976 TPRXLQ17RH7 258 aa4.67□□□□□ -1.66
PTPDC1-201ENST00000288976 MUC17Q685J3 4493 aa4.66□□□□□ -1.66
PTPDC1-201ENST00000288976 MMP24-AS1A0A0U1RRL7 71 aa4.66□□□□□ -1.66
PTPDC1-201ENST00000288976 Q5W150 140 aa4.66□□□□□ -1.66
PTPDC1-201ENST00000288976 OCR1Q9BZK8 76 aa4.64□□□□□ -1.67
PTPDC1-201ENST00000288976 KRTAP13-3Q3SY46 172 aa4.64□□□□□ -1.67
PTPDC1-201ENST00000288976 CYP4F30PQ9H0H9 118 aa4.63□□□□□ -1.67
PTPDC1-201ENST00000288976 KRTAP16-1A8MUX0 517 aa4.62□□□□□ -1.67
PTPDC1-201ENST00000288976 LUZP6Q538Z0 58 aa4.62□□□□□ -1.67
PTPDC1-201ENST00000288976 XP32Q5T750 250 aa4.59□□□□□ -1.67
PTPDC1-201ENST00000288976 Q75L30 129 aa4.59□□□□□ -1.67
PTPDC1-201ENST00000288976 A8MUU9 505 aa4.58□□□□□ -1.68
PTPDC1-201ENST00000288976 NOTCH2NLQ7Z3S9 236 aa4.58□□□□□ -1.68
PTPDC1-201ENST00000288976 ADM2Q7Z4H4 148 aa4.58□□□□□ -1.68
PTPDC1-201ENST00000288976 HMCN2Q8NDA2 5059 aa4.58□□□□□ -1.68
PTPDC1-201ENST00000288976 Q1T7F1 81 aa4.57□□□□□ -1.68
PTPDC1-201ENST00000288976 RPL37P61927 97 aaKnown RBP4.56□□□□□ -1.68
PTPDC1-201ENST00000288976 KTN1-AS1Q86SY8 53 aa4.54□□□□□ -1.68
PTPDC1-201ENST00000288976 HERC1Q15751 4861 aa4.52□□□□□ -1.69
PTPDC1-201ENST00000288976 SPANXA2-OT1Q8N9U9 137 aa4.52□□□□□ -1.69
PTPDC1-201ENST00000288976 SPATA8Q6RVD6 105 aa4.51□□□□□ -1.69
PTPDC1-201ENST00000288976 DMAC1Q96GE9 116 aa4.5□□□□□ -1.69
PTPDC1-201ENST00000288976 H1FX-AS1Q4G0G2 97 aa4.48□□□□□ -1.69
PTPDC1-201ENST00000288976 Q5VV11 94 aa4.48□□□□□ -1.69
PTPDC1-201ENST00000288976 LPAP08519 4548 aa4.47□□□□□ -1.69
PTPDC1-201ENST00000288976 A8MU10 97 aa4.46□□□□□ -1.7
PTPDC1-201ENST00000288976 KRTAP10-10P60014 251 aa4.45□□□□□ -1.7
PTPDC1-201ENST00000288976 PRAC1Q96KF2 57 aa4.39□□□□□ -1.71
PTPDC1-201ENST00000288976 LRP2P98164 4655 aa4.38□□□□□ -1.71
PTPDC1-201ENST00000288976 LINC01558Q9Y6Z2 57 aa4.36□□□□□ -1.71
PTPDC1-201ENST00000288976 KRTAP4-1Q9BYQ7 146 aa4.31□□□□□ -1.72
PTPDC1-201ENST00000288976 A6NN06 94 aa4.29□□□□□ -1.72
PTPDC1-201ENST00000288976 RNF213Q63HN8 5207 aa4.29□□□□□ -1.72
PTPDC1-201ENST00000288976 H3BS24 57 aa4.29□□□□□ -1.72
PTPDC1-201ENST00000288976 ROMO1P60602 79 aa4.27□□□□□ -1.73
PTPDC1-201ENST00000288976 UBR4Q5T4S7 5183 aa4.26□□□□□ -1.73
PTPDC1-201ENST00000288976 TNP1P09430 55 aa4.25□□□□□ -1.73
PTPDC1-201ENST00000288976 KRTAP19-2Q3LHN2 52 aa4.24□□□□□ -1.73
PTPDC1-201ENST00000288976 KRTAP3-1Q9BYR8 98 aa4.2□□□□□ -1.74
PTPDC1-201ENST00000288976 FLGP20930 4061 aaPredicted RBP4.19□□□□□ -1.74
PTPDC1-201ENST00000288976 LCE2CQ5TA81 110 aa4.17□□□□□ -1.74
PTPDC1-201ENST00000288976 A0A0A0MQY5 61 aa4.15□□□□□ -1.75
PTPDC1-201ENST00000288976 PRO2289Q9P1D8 64 aa4.14□□□□□ -1.75
PTPDC1-201ENST00000288976 C10orf95Q9H7T3 257 aa4.12□□□□□ -1.75
PTPDC1-201ENST00000288976 MUC2Q02817 5179 aa4.11□□□□□ -1.75
PTPDC1-201ENST00000288976 MT1HP80294 61 aa4.11□□□□□ -1.75
PTPDC1-201ENST00000288976 FAT4Q6V0I7 4981 aa4.1□□□□□ -1.75
PTPDC1-201ENST00000288976 P0C880 135 aa4.08□□□□□ -1.76
PTPDC1-201ENST00000288976 KRTAP3-3Q9BYR6 98 aa4.07□□□□□ -1.76
PTPDC1-201ENST00000288976 LCE2AQ5TA79 106 aaPredicted RBP4.05□□□□□ -1.76
PTPDC1-201ENST00000288976 H0YAA0 97 aa4.04□□□□□ -1.76
PTPDC1-201ENST00000288976 KRTAP25-1Q3LHN0 102 aa3.99□□□□□ -1.77
PTPDC1-201ENST00000288976 KRTAP10-6P60371 365 aaPredicted RBP3.98□□□□□ -1.77
PTPDC1-201ENST00000288976 LORP23490 312 aaPredicted RBP3.97□□□□□ -1.77
PTPDC1-201ENST00000288976 KRTAP9-8Q9BYQ0 159 aa3.93□□□□□ -1.78
PTPDC1-201ENST00000288976 NDUFAF8A1L188 74 aa3.92□□□□□ -1.78
PTPDC1-201ENST00000288976 MT2AP02795 61 aa3.9□□□□□ -1.78
PTPDC1-201ENST00000288976 KRTAP3-2Q9BYR7 98 aa3.9□□□□□ -1.79
PTPDC1-201ENST00000288976 CRCT1Q9UGL9 99 aa3.88□□□□□ -1.79
PTPDC1-201ENST00000288976 MT1FP04733 61 aa3.86□□□□□ -1.79
PTPDC1-201ENST00000288976 PP632Q6XCG6 107 aa3.82□□□□□ -1.8
PTPDC1-201ENST00000288976 SPRR2GQ9BYE4 73 aa3.81□□□□□ -1.8
PTPDC1-201ENST00000288976 KRTAP9-3Q9BYQ3 159 aa3.81□□□□□ -1.8
PTPDC1-201ENST00000288976 LCE2DQ5TA82 110 aaPredicted RBP3.8□□□□□ -1.8
PTPDC1-201ENST00000288976 SYNE1Q8NF91 8797 aaKnown RBP3.8□□□□□ -1.8
PTPDC1-201ENST00000288976 KRTAP19-1Q8IUB9 90 aa3.75□□□□□ -1.81
PTPDC1-201ENST00000288976 KRTAP19-8Q3LI54 63 aa3.74□□□□□ -1.81
PTPDC1-201ENST00000288976 KRTAP12-2P59991 146 aa3.72□□□□□ -1.81
PTPDC1-201ENST00000288976 KRTAP13-4Q3LI77 160 aa3.72□□□□□ -1.81
PTPDC1-201ENST00000288976 KRTAP15-1Q3LI76 137 aa3.68□□□□□ -1.82
PTPDC1-201ENST00000288976 LCE2BO14633 110 aa3.67□□□□□ -1.82
PTPDC1-201ENST00000288976 MT1BP07438 61 aa3.65□□□□□ -1.83
PTPDC1-201ENST00000288976 FSIP2Q5CZC0 6907 aa3.64□□□□□ -1.83
PTPDC1-201ENST00000288976 KRTAP12-1P59990 96 aa3.64□□□□□ -1.83
PTPDC1-201ENST00000288976 KRTAP9-2Q9BYQ4 174 aa3.61□□□□□ -1.83
PTPDC1-201ENST00000288976 OBSCNQ5VST9 7968 aa3.61□□□□□ -1.83
PTPDC1-201ENST00000288976 USH2AO75445 5202 aa3.6□□□□□ -1.83
PTPDC1-201ENST00000288976 KRTAP19-6Q3LI70 58 aa3.57□□□□□ -1.84
PTPDC1-201ENST00000288976 KRTAP10-12P60413 245 aa3.56□□□□□ -1.84
PTPDC1-201ENST00000288976 SSPOA2VEC9 5147 aa3.54□□□□□ -1.84
PTPDC1-201ENST00000288976 KRTAP8-1Q8IUC2 63 aa3.53□□□□□ -1.84
PTPDC1-201ENST00000288976 KRTAP10-5P60370 271 aa3.53□□□□□ -1.84
PTPDC1-201ENST00000288976 MT1XP80297 61 aa3.5□□□□□ -1.85
PTPDC1-201ENST00000288976 SPRR2FQ96RM1 72 aa3.42□□□□□ -1.86
PTPDC1-201ENST00000288976 KRTAP12-3P60328 96 aa3.42□□□□□ -1.86
PTPDC1-201ENST00000288976 KRTAP9-6A0A140TA67 174 aa3.4□□□□□ -1.86
PTPDC1-201ENST00000288976 DSTQ03001 7570 aaKnown RBP3.39□□□□□ -1.87
PTPDC1-201ENST00000288976 LCE3AQ5TA76 89 aa3.35□□□□□ -1.87
PTPDC1-201ENST00000288976 FCGBPQ9Y6R7 5405 aaPredicted RBP3.34□□□□□ -1.88
PTPDC1-201ENST00000288976 KRTAP23-1A1A580 65 aa3.33□□□□□ -1.88
PTPDC1-201ENST00000288976 MACF1Q9UPN3 7388 aaKnown RBP3.32□□□□□ -1.88
PTPDC1-201ENST00000288976 KRTAP10-7P60409 375 aaPredicted RBP3.32□□□□□ -1.88
PTPDC1-201ENST00000288976 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.23□□□□□ -1.89
PTPDC1-201ENST00000288976 KRTAP5-9P26371 169 aa3.18□□□□□ -1.9
PTPDC1-201ENST00000288976 KRTAP6-3Q3LI67 103 aa3.18□□□□□ -1.9
PTPDC1-201ENST00000288976 SPRR2EP22531 72 aa3.17□□□□□ -1.9
PTPDC1-201ENST00000288976 SPRR2BP35325 72 aa3.17□□□□□ -1.9
PTPDC1-201ENST00000288976 SPRR2AP35326 72 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms