RNA–Protein interactions for RNA: ENST00000261667.7

KPNA3-201, Transcript of karyopherin subunit alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KPNA3, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNA3-201ENST00000261667 RPS29P62273 56 aaKnown RBP5.6□□□□□ -1.51
KPNA3-201ENST00000261667 PKD1P98161 4303 aa5.6□□□□□ -1.51
KPNA3-201ENST00000261667 FAT2Q9NYQ8 4349 aa5.58□□□□□ -1.52
KPNA3-201ENST00000261667 DNAH8Q96JB1 4490 aa5.56□□□□□ -1.52
KPNA3-201ENST00000261667 Q5VSD8 79 aa5.56□□□□□ -1.52
KPNA3-201ENST00000261667 TNP1P09430 55 aa5.55□□□□□ -1.52
KPNA3-201ENST00000261667 DNAH5Q8TE73 4624 aa5.54□□□□□ -1.52
KPNA3-201ENST00000261667 KRTAP12-2P59991 146 aa5.52□□□□□ -1.53
KPNA3-201ENST00000261667 SACSQ9NZJ4 4579 aa5.49□□□□□ -1.53
KPNA3-201ENST00000261667 M0R2T5 61 aa5.46□□□□□ -1.53
KPNA3-201ENST00000261667 KRTAP12-1P59990 96 aa5.4□□□□□ -1.55
KPNA3-201ENST00000261667 PRO2289Q9P1D8 64 aa5.39□□□□□ -1.55
KPNA3-201ENST00000261667 RYR2Q92736 4967 aa5.38□□□□□ -1.55
KPNA3-201ENST00000261667 PKHD1P08F94 4074 aa5.38□□□□□ -1.55
KPNA3-201ENST00000261667 KRTAP13-4Q3LI77 160 aa5.36□□□□□ -1.55
KPNA3-201ENST00000261667 LRP1BQ9NZR2 4599 aa5.36□□□□□ -1.55
KPNA3-201ENST00000261667 KRTAP1-4P0C5Y4 121 aa5.35□□□□□ -1.55
KPNA3-201ENST00000261667 KMT2CQ8NEZ4 4911 aaKnown RBP5.34□□□□□ -1.56
KPNA3-201ENST00000261667 XP32Q5T750 250 aa5.32□□□□□ -1.56
KPNA3-201ENST00000261667 KRTAP3-1Q9BYR8 98 aa5.31□□□□□ -1.56
KPNA3-201ENST00000261667 VPS13BQ7Z7G8 4022 aa5.31□□□□□ -1.56
KPNA3-201ENST00000261667 INE1O15225 51 aa5.29□□□□□ -1.56
KPNA3-201ENST00000261667 DYNC1H1Q14204 4646 aaKnown RBP5.27□□□□□ -1.57
KPNA3-201ENST00000261667 APOBP04114 4563 aaKnown RBP5.27□□□□□ -1.57
KPNA3-201ENST00000261667 KRTAP10-6P60371 365 aaPredicted RBP5.27□□□□□ -1.57
KPNA3-201ENST00000261667 PKHD1L1Q86WI1 4243 aa5.26□□□□□ -1.57
KPNA3-201ENST00000261667 RYR3Q15413 4870 aa5.24□□□□□ -1.57
KPNA3-201ENST00000261667 A0A1B0GVY2 172 aa5.23□□□□□ -1.57
KPNA3-201ENST00000261667 KRTAP10-4P60372 401 aaPredicted RBP5.14□□□□□ -1.59
KPNA3-201ENST00000261667 HSPG2P98160 4391 aa5.11□□□□□ -1.59
KPNA3-201ENST00000261667 FAT1Q14517 4588 aa5.1□□□□□ -1.59
KPNA3-201ENST00000261667 KRTAP3-2Q9BYR7 98 aa5.06□□□□□ -1.6
KPNA3-201ENST00000261667 RYR1P21817 5038 aa5.05□□□□□ -1.6
KPNA3-201ENST00000261667 TNXBP22105 4242 aa5.05□□□□□ -1.6
KPNA3-201ENST00000261667 EPPK1P58107 5090 aaKnown RBP5.01□□□□□ -1.61
KPNA3-201ENST00000261667 KRTAP17-1Q9BYP8 105 aa5.01□□□□□ -1.61
KPNA3-201ENST00000261667 FAT3Q8TDW7 4589 aa4.99□□□□□ -1.61
KPNA3-201ENST00000261667 LRP1Q07954 4544 aaKnown RBP4.94□□□□□ -1.62
KPNA3-201ENST00000261667 KRTAP3-3Q9BYR6 98 aa4.94□□□□□ -1.62
KPNA3-201ENST00000261667 KIAA1109Q2LD37 5005 aa4.93□□□□□ -1.62
KPNA3-201ENST00000261667 KRTAP23-1A1A580 65 aa4.87□□□□□ -1.63
KPNA3-201ENST00000261667 MYCBP2O75592 4640 aa4.84□□□□□ -1.63
KPNA3-201ENST00000261667 MT1HL1P0DM35 61 aa4.78□□□□□ -1.64
KPNA3-201ENST00000261667 ABCA13Q86UQ4 5058 aa4.76□□□□□ -1.65
KPNA3-201ENST00000261667 HERC2O95714 4834 aa4.75□□□□□ -1.65
KPNA3-201ENST00000261667 KRTAP10-10P60014 251 aa4.72□□□□□ -1.65
KPNA3-201ENST00000261667 BIRC6Q9NR09 4857 aa4.72□□□□□ -1.65
KPNA3-201ENST00000261667 KRTAP4-5Q9BYR2 181 aa4.71□□□□□ -1.66
KPNA3-201ENST00000261667 LPAP08519 4548 aa4.62□□□□□ -1.67
KPNA3-201ENST00000261667 PCLOQ9Y6V0 5065 aa4.58□□□□□ -1.68
KPNA3-201ENST00000261667 LRP2P98164 4655 aa4.58□□□□□ -1.68
KPNA3-201ENST00000261667 MUC17Q685J3 4493 aa4.54□□□□□ -1.68
KPNA3-201ENST00000261667 LORP23490 312 aaPredicted RBP4.52□□□□□ -1.69
KPNA3-201ENST00000261667 LCE3AQ5TA76 89 aa4.51□□□□□ -1.69
KPNA3-201ENST00000261667 KRTAP12-3P60328 96 aa4.49□□□□□ -1.69
KPNA3-201ENST00000261667 HMCN2Q8NDA2 5059 aa4.45□□□□□ -1.7
KPNA3-201ENST00000261667 HERC1Q15751 4861 aa4.43□□□□□ -1.7
KPNA3-201ENST00000261667 KRTAP10-12P60413 245 aa4.41□□□□□ -1.7
KPNA3-201ENST00000261667 KRTAP19-2Q3LHN2 52 aa4.38□□□□□ -1.71
KPNA3-201ENST00000261667 KRTAP4-1Q9BYQ7 146 aa4.37□□□□□ -1.71
KPNA3-201ENST00000261667 FLGP20930 4061 aaPredicted RBP4.31□□□□□ -1.72
KPNA3-201ENST00000261667 MUC2Q02817 5179 aa4.31□□□□□ -1.72
KPNA3-201ENST00000261667 SPRR5A0A1B0GTR4 108 aa4.27□□□□□ -1.73
KPNA3-201ENST00000261667 KRTAP10-5P60370 271 aa4.26□□□□□ -1.73
KPNA3-201ENST00000261667 CRCT1Q9UGL9 99 aa4.23□□□□□ -1.73
KPNA3-201ENST00000261667 UBR4Q5T4S7 5183 aa4.2□□□□□ -1.74
KPNA3-201ENST00000261667 RNF213Q63HN8 5207 aa4.18□□□□□ -1.74
KPNA3-201ENST00000261667 LCE2CQ5TA81 110 aa4.17□□□□□ -1.74
KPNA3-201ENST00000261667 FAT4Q6V0I7 4981 aa4.1□□□□□ -1.75
KPNA3-201ENST00000261667 KRTAP8-1Q8IUC2 63 aa4.07□□□□□ -1.76
KPNA3-201ENST00000261667 SPRR2GQ9BYE4 73 aa4.05□□□□□ -1.76
KPNA3-201ENST00000261667 MT1HP80294 61 aa4□□□□□ -1.77
KPNA3-201ENST00000261667 LCE3CQ5T5A8 94 aa3.98□□□□□ -1.77
KPNA3-201ENST00000261667 KRTAP12-4P60329 112 aa3.94□□□□□ -1.78
KPNA3-201ENST00000261667 KRTAP9-8Q9BYQ0 159 aa3.92□□□□□ -1.78
KPNA3-201ENST00000261667 MT2AP02795 61 aa3.87□□□□□ -1.79
KPNA3-201ENST00000261667 KRTAP19-1Q8IUB9 90 aa3.86□□□□□ -1.79
KPNA3-201ENST00000261667 KRTAP19-5Q3LI72 72 aa3.86□□□□□ -1.79
KPNA3-201ENST00000261667 MT1FP04733 61 aa3.85□□□□□ -1.79
KPNA3-201ENST00000261667 KRTAP19-8Q3LI54 63 aa3.84□□□□□ -1.8
KPNA3-201ENST00000261667 LCE2AQ5TA79 106 aaPredicted RBP3.84□□□□□ -1.8
KPNA3-201ENST00000261667 KRTAP19-4Q3LI73 84 aa3.78□□□□□ -1.8
KPNA3-201ENST00000261667 KRTAP9-3Q9BYQ3 159 aa3.77□□□□□ -1.81
KPNA3-201ENST00000261667 FSIP2Q5CZC0 6907 aa3.72□□□□□ -1.81
KPNA3-201ENST00000261667 MT1BP07438 61 aa3.7□□□□□ -1.82
KPNA3-201ENST00000261667 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
KPNA3-201ENST00000261667 KRTAP10-7P60409 375 aaPredicted RBP3.67□□□□□ -1.82
KPNA3-201ENST00000261667 MT1XP80297 61 aa3.65□□□□□ -1.82
KPNA3-201ENST00000261667 LCE2BO14633 110 aa3.64□□□□□ -1.83
KPNA3-201ENST00000261667 LCE3BQ5TA77 95 aa3.59□□□□□ -1.83
KPNA3-201ENST00000261667 SPRR2FQ96RM1 72 aa3.58□□□□□ -1.84
KPNA3-201ENST00000261667 USH2AO75445 5202 aa3.57□□□□□ -1.84
KPNA3-201ENST00000261667 LCE3DQ9BYE3 92 aa3.52□□□□□ -1.85
KPNA3-201ENST00000261667 PRM1P04553 51 aa3.51□□□□□ -1.85
KPNA3-201ENST00000261667 LCE3EQ5T5B0 92 aa3.51□□□□□ -1.85
KPNA3-201ENST00000261667 SSPOA2VEC9 5147 aa3.51□□□□□ -1.85
KPNA3-201ENST00000261667 MT1GP13640 62 aa3.48□□□□□ -1.85
KPNA3-201ENST00000261667 KRTAP4-7Q9BYR0 210 aa3.46□□□□□ -1.86
KPNA3-201ENST00000261667 KRTAP4-8A0A0G2JLE6 195 aa3.43□□□□□ -1.86
KPNA3-201ENST00000261667 KRTAP4-8Q9BYQ9 185 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms