RNA–Protein interactions for RNA: ENST00000261415.11

COL4A3BP-201, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 1 (best) BASIC

Gene COL4A3BP, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-201ENST00000261415 SPINK1P00995 79 aa10.67□□□□□ -0.7
COL4A3BP-201ENST00000261415 MT1HL1P0DM35 61 aa10.62□□□□□ -0.71
COL4A3BP-201ENST00000261415 RPS29P62273 56 aaKnown RBP10.61□□□□□ -0.71
COL4A3BP-201ENST00000261415 A8MUU9 505 aa10.57□□□□□ -0.72
COL4A3BP-201ENST00000261415 IGKV2-30P06310 120 aa10.56□□□□□ -0.72
COL4A3BP-201ENST00000261415 DMBT1Q9UGM3 2413 aaPredicted RBP10.56□□□□□ -0.72
COL4A3BP-201ENST00000261415 PCLOQ9Y6V0 5065 aa10.46□□□□□ -0.74
COL4A3BP-201ENST00000261415 P0C880 135 aa10.42□□□□□ -0.74
COL4A3BP-201ENST00000261415 J3QL48 77 aa10.41□□□□□ -0.74
COL4A3BP-201ENST00000261415 IGKV2D-30A0A075B6S6 120 aa10.38□□□□□ -0.75
COL4A3BP-201ENST00000261415 H0YAA0 97 aa10.36□□□□□ -0.75
COL4A3BP-201ENST00000261415 K7ERS5 55 aa10.26□□□□□ -0.77
COL4A3BP-201ENST00000261415 A0A1B0GU33 70 aa10.23□□□□□ -0.77
COL4A3BP-201ENST00000261415 C9orf92A6NGG3 77 aa10.22□□□□□ -0.77
COL4A3BP-201ENST00000261415 KRTAP16-1A8MUX0 517 aa10.19□□□□□ -0.78
COL4A3BP-201ENST00000261415 H1FX-AS1Q4G0G2 97 aa10.14□□□□□ -0.79
COL4A3BP-201ENST00000261415 SPINT4Q6UDR6 99 aa10.13□□□□□ -0.79
COL4A3BP-201ENST00000261415 HERC1Q15751 4861 aa10.13□□□□□ -0.79
COL4A3BP-201ENST00000261415 CRIPTQ9P021 101 aa10.12□□□□□ -0.79
COL4A3BP-201ENST00000261415 TPRXLQ17RH7 258 aa10.09□□□□□ -0.79
COL4A3BP-201ENST00000261415 C20orf166-AS1Q96NR2 134 aa10.08□□□□□ -0.8
COL4A3BP-201ENST00000261415 LPAP08519 4548 aa10.07□□□□□ -0.8
COL4A3BP-201ENST00000261415 A0A0A0MQY5 61 aa10.07□□□□□ -0.8
COL4A3BP-201ENST00000261415 NDUFAF8A1L188 74 aa10.04□□□□□ -0.8
COL4A3BP-201ENST00000261415 XP32Q5T750 250 aa10.04□□□□□ -0.8
COL4A3BP-201ENST00000261415 LRP2P98164 4655 aa9.97□□□□□ -0.81
COL4A3BP-201ENST00000261415 KRTAP15-1Q3LI76 137 aa9.97□□□□□ -0.81
COL4A3BP-201ENST00000261415 HMCN2Q8NDA2 5059 aa9.96□□□□□ -0.81
COL4A3BP-201ENST00000261415 RPL37P61927 97 aaKnown RBP9.94□□□□□ -0.82
COL4A3BP-201ENST00000261415 COX6B2Q6YFQ2 88 aa9.85□□□□□ -0.83
COL4A3BP-201ENST00000261415 SEC61BP60468 96 aaKnown RBP9.73□□□□□ -0.85
COL4A3BP-201ENST00000261415 KRTAP3-1Q9BYR8 98 aa9.71□□□□□ -0.86
COL4A3BP-201ENST00000261415 MUC17Q685J3 4493 aa9.7□□□□□ -0.86
COL4A3BP-201ENST00000261415 C10orf95Q9H7T3 257 aa9.64□□□□□ -0.87
COL4A3BP-201ENST00000261415 LUZP6Q538Z0 58 aa9.57□□□□□ -0.88
COL4A3BP-201ENST00000261415 KRTAP4-1Q9BYQ7 146 aa9.56□□□□□ -0.88
COL4A3BP-201ENST00000261415 UBR4Q5T4S7 5183 aa9.55□□□□□ -0.88
COL4A3BP-201ENST00000261415 A0A0D9SG42 100 aa9.51□□□□□ -0.89
COL4A3BP-201ENST00000261415 KRTAP10-6P60371 365 aaPredicted RBP9.49□□□□□ -0.89
COL4A3BP-201ENST00000261415 MUC2Q02817 5179 aa9.49□□□□□ -0.89
COL4A3BP-201ENST00000261415 KRTAP13-4Q3LI77 160 aa9.46□□□□□ -0.9
COL4A3BP-201ENST00000261415 RNF213Q63HN8 5207 aa9.44□□□□□ -0.9
COL4A3BP-201ENST00000261415 S4R3F8 94 aa9.43□□□□□ -0.9
COL4A3BP-201ENST00000261415 KRTAP3-2Q9BYR7 98 aa9.33□□□□□ -0.92
COL4A3BP-201ENST00000261415 KRTAP12-2P59991 146 aa9.28□□□□□ -0.92
COL4A3BP-201ENST00000261415 KRTAP19-2Q3LHN2 52 aa9.27□□□□□ -0.93
COL4A3BP-201ENST00000261415 KRTAP3-3Q9BYR6 98 aa9.25□□□□□ -0.93
COL4A3BP-201ENST00000261415 KRTAP12-1P59990 96 aa9.18□□□□□ -0.94
COL4A3BP-201ENST00000261415 PLAC4Q8WY50 150 aa9.14□□□□□ -0.95
COL4A3BP-201ENST00000261415 LCE2CQ5TA81 110 aa9.12□□□□□ -0.95
COL4A3BP-201ENST00000261415 FAT4Q6V0I7 4981 aa9.12□□□□□ -0.95
COL4A3BP-201ENST00000261415 FLGP20930 4061 aaPredicted RBP9.11□□□□□ -0.95
COL4A3BP-201ENST00000261415 M0QZ58 72 aa9□□□□□ -0.97
COL4A3BP-201ENST00000261415 MT1HP80294 61 aa8.96□□□□□ -0.97
COL4A3BP-201ENST00000261415 M0R2T5 61 aa8.85□□□□□ -0.99
COL4A3BP-201ENST00000261415 LCE2AQ5TA79 106 aaPredicted RBP8.74□□□□□ -1.01
COL4A3BP-201ENST00000261415 PP632Q6XCG6 107 aa8.71□□□□□ -1.02
COL4A3BP-201ENST00000261415 CAMK2N1Q7Z7J9 78 aa8.68□□□□□ -1.02
COL4A3BP-201ENST00000261415 LORP23490 312 aaPredicted RBP8.61□□□□□ -1.03
COL4A3BP-201ENST00000261415 KRTAP9-8Q9BYQ0 159 aa8.6□□□□□ -1.03
COL4A3BP-201ENST00000261415 MT2AP02795 61 aa8.56□□□□□ -1.04
COL4A3BP-201ENST00000261415 R4GN34 69 aa8.51□□□□□ -1.05
COL4A3BP-201ENST00000261415 MT1FP04733 61 aa8.51□□□□□ -1.05
COL4A3BP-201ENST00000261415 KRTAP10-10P60014 251 aa8.47□□□□□ -1.05
COL4A3BP-201ENST00000261415 PRO2289Q9P1D8 64 aa8.45□□□□□ -1.06
COL4A3BP-201ENST00000261415 SPRR5A0A1B0GTR4 108 aa8.37□□□□□ -1.07
COL4A3BP-201ENST00000261415 SPRR2GQ9BYE4 73 aa8.29□□□□□ -1.08
COL4A3BP-201ENST00000261415 KRTAP9-3Q9BYQ3 159 aa8.29□□□□□ -1.08
COL4A3BP-201ENST00000261415 KRTAP19-1Q8IUB9 90 aa8.29□□□□□ -1.08
COL4A3BP-201ENST00000261415 KRTAP23-1A1A580 65 aa8.22□□□□□ -1.09
COL4A3BP-201ENST00000261415 INE1O15225 51 aa8.19□□□□□ -1.1
COL4A3BP-201ENST00000261415 LCE2BO14633 110 aa8.1□□□□□ -1.11
COL4A3BP-201ENST00000261415 KRTAP19-8Q3LI54 63 aa8.1□□□□□ -1.11
COL4A3BP-201ENST00000261415 TNP1P09430 55 aa8.04□□□□□ -1.12
COL4A3BP-201ENST00000261415 MT1BP07438 61 aa8.01□□□□□ -1.13
COL4A3BP-201ENST00000261415 LCE2DQ5TA82 110 aaPredicted RBP7.99□□□□□ -1.13
COL4A3BP-201ENST00000261415 USH2AO75445 5202 aa7.98□□□□□ -1.13
COL4A3BP-201ENST00000261415 FSIP2Q5CZC0 6907 aa7.79□□□□□ -1.16
COL4A3BP-201ENST00000261415 KRTAP9-2Q9BYQ4 174 aa7.79□□□□□ -1.16
COL4A3BP-201ENST00000261415 SSPOA2VEC9 5147 aa7.77□□□□□ -1.17
COL4A3BP-201ENST00000261415 MT1XP80297 61 aa7.72□□□□□ -1.17
COL4A3BP-201ENST00000261415 KRTAP10-5P60370 271 aa7.69□□□□□ -1.18
COL4A3BP-201ENST00000261415 KRTAP19-6Q3LI70 58 aa7.64□□□□□ -1.19
COL4A3BP-201ENST00000261415 CRCT1Q9UGL9 99 aa7.48□□□□□ -1.21
COL4A3BP-201ENST00000261415 FCGBPQ9Y6R7 5405 aaPredicted RBP7.45□□□□□ -1.22
COL4A3BP-201ENST00000261415 KRTAP10-7P60409 375 aaPredicted RBP7.4□□□□□ -1.23
COL4A3BP-201ENST00000261415 LCE3AQ5TA76 89 aa7.39□□□□□ -1.23
COL4A3BP-201ENST00000261415 KRTAP10-12P60413 245 aa7.31□□□□□ -1.24
COL4A3BP-201ENST00000261415 KRTAP8-1Q8IUC2 63 aa7.29□□□□□ -1.24
COL4A3BP-201ENST00000261415 KRTAP9-6A0A140TA67 174 aa7.25□□□□□ -1.25
COL4A3BP-201ENST00000261415 KMT2DO14686 5537 aa7.24□□□□□ -1.25
COL4A3BP-201ENST00000261415 KRTAP4-8A0A0G2JLE6 195 aa7.16□□□□□ -1.26
COL4A3BP-201ENST00000261415 KRTAP4-8Q9BYQ9 185 aa7.16□□□□□ -1.26
COL4A3BP-201ENST00000261415 MACF1Q9UPN3 7388 aaKnown RBP7.13□□□□□ -1.27
COL4A3BP-201ENST00000261415 KRTAP12-3P60328 96 aa7.04□□□□□ -1.28
COL4A3BP-201ENST00000261415 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.94□□□□□ -1.3
COL4A3BP-201ENST00000261415 SYNE2Q8WXH0 6885 aaKnown RBP6.93□□□□□ -1.3
COL4A3BP-201ENST00000261415 KRTAP19-5Q3LI72 72 aa6.92□□□□□ -1.3
COL4A3BP-201ENST00000261415 KRTAP19-7Q3SYF9 63 aa6.89□□□□□ -1.31
COL4A3BP-201ENST00000261415 SPRR2FQ96RM1 72 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms