RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 CSAG1Q6PB30 78 aa7.92□□□□□ -1.14
DDX56-201ENST00000258772 KMT2CQ8NEZ4 4911 aaKnown RBP7.9□□□□□ -1.14
DDX56-201ENST00000258772 DMBT1Q9UGM3 2413 aaPredicted RBP7.89□□□□□ -1.15
DDX56-201ENST00000258772 RPL37P61927 97 aaKnown RBP7.89□□□□□ -1.15
DDX56-201ENST00000258772 Q5VSD8 79 aa7.87□□□□□ -1.15
DDX56-201ENST00000258772 HSPG2P98160 4391 aa7.85□□□□□ -1.15
DDX56-201ENST00000258772 XP32Q5T750 250 aa7.84□□□□□ -1.15
DDX56-201ENST00000258772 KRTAP3-3Q9BYR6 98 aa7.84□□□□□ -1.15
DDX56-201ENST00000258772 KRTAP10-6P60371 365 aaPredicted RBP7.79□□□□□ -1.16
DDX56-201ENST00000258772 MYCBP2O75592 4640 aa7.76□□□□□ -1.17
DDX56-201ENST00000258772 K7ERS5 55 aa7.76□□□□□ -1.17
DDX56-201ENST00000258772 KRTAP17-1Q9BYP8 105 aa7.74□□□□□ -1.17
DDX56-201ENST00000258772 S4R3F8 94 aa7.74□□□□□ -1.17
DDX56-201ENST00000258772 KRTAP3-2Q9BYR7 98 aa7.73□□□□□ -1.17
DDX56-201ENST00000258772 KRTAP25-1Q3LHN0 102 aa7.71□□□□□ -1.18
DDX56-201ENST00000258772 KRTAP13-4Q3LI77 160 aa7.7□□□□□ -1.18
DDX56-201ENST00000258772 RYR1P21817 5038 aa7.7□□□□□ -1.18
DDX56-201ENST00000258772 MT1HL1P0DM35 61 aa7.69□□□□□ -1.18
DDX56-201ENST00000258772 ROMO1P60602 79 aa7.68□□□□□ -1.18
DDX56-201ENST00000258772 A0A0D9SG42 100 aa7.63□□□□□ -1.19
DDX56-201ENST00000258772 P0C880 135 aa7.62□□□□□ -1.19
DDX56-201ENST00000258772 RYR3Q15413 4870 aa7.61□□□□□ -1.19
DDX56-201ENST00000258772 CRIPTQ9P021 101 aa7.59□□□□□ -1.19
DDX56-201ENST00000258772 KIAA1109Q2LD37 5005 aa7.57□□□□□ -1.2
DDX56-201ENST00000258772 LPAP08519 4548 aa7.54□□□□□ -1.2
DDX56-201ENST00000258772 TPRXLQ17RH7 258 aa7.53□□□□□ -1.2
DDX56-201ENST00000258772 LRP2P98164 4655 aa7.5□□□□□ -1.21
DDX56-201ENST00000258772 KRTAP12-2P59991 146 aa7.45□□□□□ -1.22
DDX56-201ENST00000258772 LUZP6Q538Z0 58 aa7.45□□□□□ -1.22
DDX56-201ENST00000258772 KRTAP12-1P59990 96 aa7.4□□□□□ -1.23
DDX56-201ENST00000258772 M0QZ58 72 aa7.39□□□□□ -1.23
DDX56-201ENST00000258772 SPINT4Q6UDR6 99 aa7.38□□□□□ -1.23
DDX56-201ENST00000258772 EPPK1P58107 5090 aaKnown RBP7.34□□□□□ -1.23
DDX56-201ENST00000258772 C10orf95Q9H7T3 257 aa7.33□□□□□ -1.24
DDX56-201ENST00000258772 ABCA13Q86UQ4 5058 aa7.32□□□□□ -1.24
DDX56-201ENST00000258772 KRTAP4-5Q9BYR2 181 aa7.32□□□□□ -1.24
DDX56-201ENST00000258772 NDUFAF8A1L188 74 aa7.22□□□□□ -1.25
DDX56-201ENST00000258772 MUC17Q685J3 4493 aa7.2□□□□□ -1.26
DDX56-201ENST00000258772 R4GN34 69 aa7.19□□□□□ -1.26
DDX56-201ENST00000258772 KRTAP4-1Q9BYQ7 146 aa7.17□□□□□ -1.26
DDX56-201ENST00000258772 LORP23490 312 aaPredicted RBP7.11□□□□□ -1.27
DDX56-201ENST00000258772 KRTAP19-2Q3LHN2 52 aa7.06□□□□□ -1.28
DDX56-201ENST00000258772 KRTAP15-1Q3LI76 137 aa7.05□□□□□ -1.28
DDX56-201ENST00000258772 BIRC6Q9NR09 4857 aa6.98□□□□□ -1.29
DDX56-201ENST00000258772 HERC2O95714 4834 aa6.96□□□□□ -1.3
DDX56-201ENST00000258772 CAMK2N1Q7Z7J9 78 aa6.94□□□□□ -1.3
DDX56-201ENST00000258772 FLGP20930 4061 aaPredicted RBP6.87□□□□□ -1.31
DDX56-201ENST00000258772 MUC2Q02817 5179 aa6.85□□□□□ -1.31
DDX56-201ENST00000258772 KRTAP23-1A1A580 65 aa6.79□□□□□ -1.32
DDX56-201ENST00000258772 PLAC4Q8WY50 150 aa6.74□□□□□ -1.33
DDX56-201ENST00000258772 PP632Q6XCG6 107 aa6.73□□□□□ -1.33
DDX56-201ENST00000258772 PCLOQ9Y6V0 5065 aa6.64□□□□□ -1.35
DDX56-201ENST00000258772 HERC1Q15751 4861 aa6.63□□□□□ -1.35
DDX56-201ENST00000258772 LCE2CQ5TA81 110 aa6.61□□□□□ -1.35
DDX56-201ENST00000258772 TNP1P09430 55 aa6.58□□□□□ -1.36
DDX56-201ENST00000258772 HMCN2Q8NDA2 5059 aa6.57□□□□□ -1.36
DDX56-201ENST00000258772 SPRR2GQ9BYE4 73 aa6.51□□□□□ -1.37
DDX56-201ENST00000258772 FAT4Q6V0I7 4981 aa6.49□□□□□ -1.37
DDX56-201ENST00000258772 KRTAP19-1Q8IUB9 90 aa6.48□□□□□ -1.37
DDX56-201ENST00000258772 M0R2T5 61 aa6.44□□□□□ -1.38
DDX56-201ENST00000258772 MT1HP80294 61 aa6.42□□□□□ -1.38
DDX56-201ENST00000258772 PRO2289Q9P1D8 64 aa6.34□□□□□ -1.39
DDX56-201ENST00000258772 MT1FP04733 61 aa6.33□□□□□ -1.4
DDX56-201ENST00000258772 MT2AP02795 61 aa6.33□□□□□ -1.4
DDX56-201ENST00000258772 RNF213Q63HN8 5207 aa6.33□□□□□ -1.4
DDX56-201ENST00000258772 KRTAP10-10P60014 251 aa6.32□□□□□ -1.4
DDX56-201ENST00000258772 KRTAP9-8Q9BYQ0 159 aa6.3□□□□□ -1.4
DDX56-201ENST00000258772 SPRR5A0A1B0GTR4 108 aa6.28□□□□□ -1.4
DDX56-201ENST00000258772 UBR4Q5T4S7 5183 aa6.28□□□□□ -1.4
DDX56-201ENST00000258772 LCE3AQ5TA76 89 aa6.23□□□□□ -1.41
DDX56-201ENST00000258772 KRTAP19-8Q3LI54 63 aa6.22□□□□□ -1.41
DDX56-201ENST00000258772 MT1BP07438 61 aa6.14□□□□□ -1.43
DDX56-201ENST00000258772 KRTAP10-5P60370 271 aa6.11□□□□□ -1.43
DDX56-201ENST00000258772 MT1XP80297 61 aa6.1□□□□□ -1.43
DDX56-201ENST00000258772 KRTAP8-1Q8IUC2 63 aa6.09□□□□□ -1.43
DDX56-201ENST00000258772 KRTAP9-3Q9BYQ3 159 aa6.03□□□□□ -1.44
DDX56-201ENST00000258772 KRTAP10-12P60413 245 aa5.97□□□□□ -1.45
DDX56-201ENST00000258772 KRTAP12-3P60328 96 aa5.93□□□□□ -1.46
DDX56-201ENST00000258772 KRTAP10-7P60409 375 aaPredicted RBP5.93□□□□□ -1.46
DDX56-201ENST00000258772 INE1O15225 51 aa5.85□□□□□ -1.47
DDX56-201ENST00000258772 LCE2BO14633 110 aa5.78□□□□□ -1.48
DDX56-201ENST00000258772 LCE2AQ5TA79 106 aaPredicted RBP5.74□□□□□ -1.49
DDX56-201ENST00000258772 KRTAP19-5Q3LI72 72 aa5.68□□□□□ -1.5
DDX56-201ENST00000258772 USH2AO75445 5202 aa5.62□□□□□ -1.51
DDX56-201ENST00000258772 LCE3CQ5T5A8 94 aa5.59□□□□□ -1.51
DDX56-201ENST00000258772 LCE2DQ5TA82 110 aaPredicted RBP5.58□□□□□ -1.52
DDX56-201ENST00000258772 KMT2DO14686 5537 aa5.58□□□□□ -1.52
DDX56-201ENST00000258772 KRTAP4-8A0A0G2JLE6 195 aa5.56□□□□□ -1.52
DDX56-201ENST00000258772 KRTAP4-8Q9BYQ9 185 aa5.56□□□□□ -1.52
DDX56-201ENST00000258772 KRTAP19-7Q3SYF9 63 aa5.44□□□□□ -1.54
DDX56-201ENST00000258772 KRTAP9-6A8MVA2 160 aa5.4□□□□□ -1.55
DDX56-201ENST00000258772 KRTAP4-7Q9BYR0 210 aa5.32□□□□□ -1.56
DDX56-201ENST00000258772 KRTAP19-4Q3LI73 84 aa5.31□□□□□ -1.56
DDX56-201ENST00000258772 MT1LQ93083 61 aa5.28□□□□□ -1.56
DDX56-201ENST00000258772 MT1EP04732 61 aa5.28□□□□□ -1.56
DDX56-201ENST00000258772 SSPOA2VEC9 5147 aa5.24□□□□□ -1.57
DDX56-201ENST00000258772 KRTAP2-3P0C7H8 128 aa5.22□□□□□ -1.57
DDX56-201ENST00000258772 KRTAP2-4Q9BYR9 128 aa5.22□□□□□ -1.57
DDX56-201ENST00000258772 KRTAP2-1Q9BYU5 128 aa5.22□□□□□ -1.57
DDX56-201ENST00000258772 KRTAP19-6Q3LI70 58 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms