RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 KIAA1109Q2LD37 5005 aa5.86□□□□□ -1.47
VPS4A-201ENST00000254950 DNAH8Q96JB1 4490 aa5.86□□□□□ -1.47
VPS4A-201ENST00000254950 SPATA8Q6RVD6 105 aa5.85□□□□□ -1.47
VPS4A-201ENST00000254950 HYDINQ4G0P3 5121 aa5.85□□□□□ -1.47
VPS4A-201ENST00000254950 CAMK2N1Q7Z7J9 78 aa5.84□□□□□ -1.47
VPS4A-201ENST00000254950 RYR3Q15413 4870 aa5.81□□□□□ -1.48
VPS4A-201ENST00000254950 KRTAP3-1Q9BYR8 98 aa5.8□□□□□ -1.48
VPS4A-201ENST00000254950 KTN1-AS1Q86SY8 53 aa5.79□□□□□ -1.48
VPS4A-201ENST00000254950 HECTD4Q9Y4D8 3996 aa5.78□□□□□ -1.48
VPS4A-201ENST00000254950 KRTAP17-1Q9BYP8 105 aa5.77□□□□□ -1.49
VPS4A-201ENST00000254950 RYR1P21817 5038 aa5.77□□□□□ -1.49
VPS4A-201ENST00000254950 APOBP04114 4563 aaKnown RBP5.74□□□□□ -1.49
VPS4A-201ENST00000254950 KMT2CQ8NEZ4 4911 aaKnown RBP5.73□□□□□ -1.49
VPS4A-201ENST00000254950 VPS13BQ7Z7G8 4022 aa5.73□□□□□ -1.49
VPS4A-201ENST00000254950 MYCBP2O75592 4640 aa5.71□□□□□ -1.5
VPS4A-201ENST00000254950 P0C880 135 aa5.67□□□□□ -1.5
VPS4A-201ENST00000254950 PLAC4Q8WY50 150 aa5.67□□□□□ -1.5
VPS4A-201ENST00000254950 PKHD1P08F94 4074 aa5.67□□□□□ -1.5
VPS4A-201ENST00000254950 A6NN06 94 aa5.66□□□□□ -1.5
VPS4A-201ENST00000254950 PKD1P98161 4303 aa5.65□□□□□ -1.51
VPS4A-201ENST00000254950 ROMO1P60602 79 aa5.62□□□□□ -1.51
VPS4A-201ENST00000254950 H0YAA0 97 aa5.61□□□□□ -1.51
VPS4A-201ENST00000254950 KRTAP10-10P60014 251 aa5.59□□□□□ -1.51
VPS4A-201ENST00000254950 LRP1Q07954 4544 aaKnown RBP5.59□□□□□ -1.51
VPS4A-201ENST00000254950 FAT3Q8TDW7 4589 aa5.58□□□□□ -1.52
VPS4A-201ENST00000254950 BIRC6Q9NR09 4857 aa5.57□□□□□ -1.52
VPS4A-201ENST00000254950 HSPG2P98160 4391 aa5.57□□□□□ -1.52
VPS4A-201ENST00000254950 KRTAP3-3Q9BYR6 98 aa5.52□□□□□ -1.53
VPS4A-201ENST00000254950 HERC2O95714 4834 aa5.51□□□□□ -1.53
VPS4A-201ENST00000254950 KRTAP10-6P60371 365 aaPredicted RBP5.48□□□□□ -1.53
VPS4A-201ENST00000254950 KRTAP4-1Q9BYQ7 146 aa5.47□□□□□ -1.53
VPS4A-201ENST00000254950 EPPK1P58107 5090 aaKnown RBP5.45□□□□□ -1.54
VPS4A-201ENST00000254950 C10orf95Q9H7T3 257 aa5.42□□□□□ -1.54
VPS4A-201ENST00000254950 KRTAP3-2Q9BYR7 98 aa5.41□□□□□ -1.54
VPS4A-201ENST00000254950 KRTAP13-4Q3LI77 160 aa5.37□□□□□ -1.55
VPS4A-201ENST00000254950 TNP1P09430 55 aa5.36□□□□□ -1.55
VPS4A-201ENST00000254950 KRTAP12-1P59990 96 aa5.33□□□□□ -1.56
VPS4A-201ENST00000254950 KRTAP12-2P59991 146 aa5.32□□□□□ -1.56
VPS4A-201ENST00000254950 KRTAP25-1Q3LHN0 102 aa5.31□□□□□ -1.56
VPS4A-201ENST00000254950 ABCA13Q86UQ4 5058 aa5.27□□□□□ -1.57
VPS4A-201ENST00000254950 LUZP6Q538Z0 58 aa5.27□□□□□ -1.57
VPS4A-201ENST00000254950 PRO2289Q9P1D8 64 aa5.26□□□□□ -1.57
VPS4A-201ENST00000254950 LRP2P98164 4655 aa5.24□□□□□ -1.57
VPS4A-201ENST00000254950 TNXBP22105 4242 aa5.22□□□□□ -1.57
VPS4A-201ENST00000254950 PKHD1L1Q86WI1 4243 aa5.22□□□□□ -1.57
VPS4A-201ENST00000254950 MT1HP80294 61 aa5.21□□□□□ -1.57
VPS4A-201ENST00000254950 PP632Q6XCG6 107 aa5.19□□□□□ -1.58
VPS4A-201ENST00000254950 LORP23490 312 aaPredicted RBP5.18□□□□□ -1.58
VPS4A-201ENST00000254950 HERC1Q15751 4861 aa5.16□□□□□ -1.58
VPS4A-201ENST00000254950 MUC2Q02817 5179 aa5.15□□□□□ -1.58
VPS4A-201ENST00000254950 LPAP08519 4548 aa5.13□□□□□ -1.59
VPS4A-201ENST00000254950 NDUFAF8A1L188 74 aa5.12□□□□□ -1.59
VPS4A-201ENST00000254950 PCLOQ9Y6V0 5065 aa5.09□□□□□ -1.59
VPS4A-201ENST00000254950 MT2AP02795 61 aa5.08□□□□□ -1.6
VPS4A-201ENST00000254950 LCE2CQ5TA81 110 aa5.02□□□□□ -1.61
VPS4A-201ENST00000254950 MT1FP04733 61 aa5□□□□□ -1.61
VPS4A-201ENST00000254950 SPRR2GQ9BYE4 73 aa4.98□□□□□ -1.61
VPS4A-201ENST00000254950 KRTAP19-2Q3LHN2 52 aa4.98□□□□□ -1.61
VPS4A-201ENST00000254950 RNF213Q63HN8 5207 aa4.91□□□□□ -1.62
VPS4A-201ENST00000254950 HMCN2Q8NDA2 5059 aa4.89□□□□□ -1.63
VPS4A-201ENST00000254950 KRTAP9-8Q9BYQ0 159 aa4.87□□□□□ -1.63
VPS4A-201ENST00000254950 FAT4Q6V0I7 4981 aa4.86□□□□□ -1.63
VPS4A-201ENST00000254950 KRTAP19-1Q8IUB9 90 aa4.85□□□□□ -1.63
VPS4A-201ENST00000254950 KRTAP10-12P60413 245 aa4.82□□□□□ -1.64
VPS4A-201ENST00000254950 MUC17Q685J3 4493 aa4.8□□□□□ -1.64
VPS4A-201ENST00000254950 KRTAP19-8Q3LI54 63 aa4.78□□□□□ -1.64
VPS4A-201ENST00000254950 FLGP20930 4061 aaPredicted RBP4.76□□□□□ -1.65
VPS4A-201ENST00000254950 KRTAP23-1A1A580 65 aa4.74□□□□□ -1.65
VPS4A-201ENST00000254950 UBR4Q5T4S7 5183 aa4.72□□□□□ -1.65
VPS4A-201ENST00000254950 KRTAP9-3Q9BYQ3 159 aa4.71□□□□□ -1.65
VPS4A-201ENST00000254950 LCE3AQ5TA76 89 aa4.69□□□□□ -1.66
VPS4A-201ENST00000254950 FSIP2Q5CZC0 6907 aa4.68□□□□□ -1.66
VPS4A-201ENST00000254950 MT1BP07438 61 aa4.67□□□□□ -1.66
VPS4A-201ENST00000254950 LCE2AQ5TA79 106 aaPredicted RBP4.65□□□□□ -1.66
VPS4A-201ENST00000254950 KRTAP12-3P60328 96 aa4.64□□□□□ -1.67
VPS4A-201ENST00000254950 KRTAP15-1Q3LI76 137 aa4.63□□□□□ -1.67
VPS4A-201ENST00000254950 MT1XP80297 61 aa4.57□□□□□ -1.68
VPS4A-201ENST00000254950 LCE2BO14633 110 aa4.56□□□□□ -1.68
VPS4A-201ENST00000254950 KRTAP10-5P60370 271 aa4.55□□□□□ -1.68
VPS4A-201ENST00000254950 KRTAP8-1Q8IUC2 63 aa4.54□□□□□ -1.68
VPS4A-201ENST00000254950 OBSCNQ5VST9 7968 aa4.51□□□□□ -1.69
VPS4A-201ENST00000254950 KRTAP10-7P60409 375 aaPredicted RBP4.47□□□□□ -1.69
VPS4A-201ENST00000254950 USH2AO75445 5202 aa4.46□□□□□ -1.7
VPS4A-201ENST00000254950 KRTAP19-5Q3LI72 72 aa4.38□□□□□ -1.71
VPS4A-201ENST00000254950 KMT2DO14686 5537 aa4.35□□□□□ -1.71
VPS4A-201ENST00000254950 LCE2DQ5TA82 110 aaPredicted RBP4.35□□□□□ -1.71
VPS4A-201ENST00000254950 KRTAP19-6Q3LI70 58 aa4.32□□□□□ -1.72
VPS4A-201ENST00000254950 SPRR2FQ96RM1 72 aa4.31□□□□□ -1.72
VPS4A-201ENST00000254950 KRTAP9-2Q9BYQ4 174 aa4.3□□□□□ -1.72
VPS4A-201ENST00000254950 KRTAP4-8A0A0G2JLE6 195 aa4.29□□□□□ -1.72
VPS4A-201ENST00000254950 KRTAP4-8Q9BYQ9 185 aa4.29□□□□□ -1.72
VPS4A-201ENST00000254950 CRCT1Q9UGL9 99 aa4.28□□□□□ -1.72
VPS4A-201ENST00000254950 DSTQ03001 7570 aaKnown RBP4.24□□□□□ -1.73
VPS4A-201ENST00000254950 KRTAP19-4Q3LI73 84 aa4.23□□□□□ -1.73
VPS4A-201ENST00000254950 SYNE1Q8NF91 8797 aaKnown RBP4.2□□□□□ -1.74
VPS4A-201ENST00000254950 LCE3CQ5T5A8 94 aa4.18□□□□□ -1.74
VPS4A-201ENST00000254950 FCGBPQ9Y6R7 5405 aaPredicted RBP4.08□□□□□ -1.76
VPS4A-201ENST00000254950 MT1EP04732 61 aa4.06□□□□□ -1.76
VPS4A-201ENST00000254950 SPRR2EP22531 72 aa4.06□□□□□ -1.76
VPS4A-201ENST00000254950 SPRR2BP35325 72 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 403.8 ms