RNA–Protein interactions for RNA: ENST00000245479.2

SOX9-201, Transcript of SRY-box 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOX9, Length 3,935 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9-201ENST00000245479 C20orf166-AS1Q96NR2 134 aa6.17□□□□□ -1.42
SOX9-201ENST00000245479 KMT2CQ8NEZ4 4911 aaKnown RBP6.14□□□□□ -1.43
SOX9-201ENST00000245479 J3QL48 77 aa6.13□□□□□ -1.43
SOX9-201ENST00000245479 KIAA1109Q2LD37 5005 aa6.11□□□□□ -1.43
SOX9-201ENST00000245479 ALMS1Q8TCU4 4167 aa6.08□□□□□ -1.44
SOX9-201ENST00000245479 R4GN34 69 aa6.08□□□□□ -1.44
SOX9-201ENST00000245479 RPS29P62273 56 aaKnown RBP6.07□□□□□ -1.44
SOX9-201ENST00000245479 SACSQ9NZJ4 4579 aa6.06□□□□□ -1.44
SOX9-201ENST00000245479 CAMK2N1Q7Z7J9 78 aa6.05□□□□□ -1.44
SOX9-201ENST00000245479 APOBP04114 4563 aaKnown RBP6.05□□□□□ -1.44
SOX9-201ENST00000245479 M0QZ58 72 aa6.04□□□□□ -1.44
SOX9-201ENST00000245479 RYR1P21817 5038 aa6.03□□□□□ -1.44
SOX9-201ENST00000245479 P0C880 135 aa6.02□□□□□ -1.45
SOX9-201ENST00000245479 KRTAP3-1Q9BYR8 98 aa5.99□□□□□ -1.45
SOX9-201ENST00000245479 A0A1B0GVY2 172 aa5.98□□□□□ -1.45
SOX9-201ENST00000245479 RYR3Q15413 4870 aa5.97□□□□□ -1.45
SOX9-201ENST00000245479 TPRXLQ17RH7 258 aa5.96□□□□□ -1.46
SOX9-201ENST00000245479 KRTAP10-8P60410 259 aa5.95□□□□□ -1.46
SOX9-201ENST00000245479 XP32Q5T750 250 aa5.93□□□□□ -1.46
SOX9-201ENST00000245479 PKD1P98161 4303 aa5.91□□□□□ -1.46
SOX9-201ENST00000245479 PLAC4Q8WY50 150 aa5.86□□□□□ -1.47
SOX9-201ENST00000245479 LRP2P98164 4655 aa5.85□□□□□ -1.47
SOX9-201ENST00000245479 KRTAP10-4P60372 401 aaPredicted RBP5.85□□□□□ -1.47
SOX9-201ENST00000245479 KRTAP4-5Q9BYR2 181 aa5.83□□□□□ -1.48
SOX9-201ENST00000245479 KRTAP12-2P59991 146 aa5.82□□□□□ -1.48
SOX9-201ENST00000245479 KRTAP13-4Q3LI77 160 aa5.82□□□□□ -1.48
SOX9-201ENST00000245479 RYR2Q92736 4967 aa5.81□□□□□ -1.48
SOX9-201ENST00000245479 HSPG2P98160 4391 aa5.8□□□□□ -1.48
SOX9-201ENST00000245479 KRTAP17-1Q9BYP8 105 aa5.8□□□□□ -1.48
SOX9-201ENST00000245479 EPPK1P58107 5090 aaKnown RBP5.79□□□□□ -1.48
SOX9-201ENST00000245479 KRTAP10-6P60371 365 aaPredicted RBP5.77□□□□□ -1.49
SOX9-201ENST00000245479 LPAP08519 4548 aa5.77□□□□□ -1.49
SOX9-201ENST00000245479 KRTAP12-1P59990 96 aa5.73□□□□□ -1.49
SOX9-201ENST00000245479 KRTAP15-1Q3LI76 137 aa5.72□□□□□ -1.49
SOX9-201ENST00000245479 MUC2Q02817 5179 aa5.7□□□□□ -1.5
SOX9-201ENST00000245479 MT1HL1P0DM35 61 aa5.67□□□□□ -1.5
SOX9-201ENST00000245479 M0R2T5 61 aa5.65□□□□□ -1.51
SOX9-201ENST00000245479 SEC61BP60468 96 aaKnown RBP5.65□□□□□ -1.51
SOX9-201ENST00000245479 ABCA13Q86UQ4 5058 aa5.65□□□□□ -1.51
SOX9-201ENST00000245479 KRTAP3-3Q9BYR6 98 aa5.65□□□□□ -1.51
SOX9-201ENST00000245479 PKHD1L1Q86WI1 4243 aa5.63□□□□□ -1.51
SOX9-201ENST00000245479 PP632Q6XCG6 107 aa5.62□□□□□ -1.51
SOX9-201ENST00000245479 KRTAP3-2Q9BYR7 98 aa5.61□□□□□ -1.51
SOX9-201ENST00000245479 TNP1P09430 55 aa5.57□□□□□ -1.52
SOX9-201ENST00000245479 HERC2O95714 4834 aa5.56□□□□□ -1.52
SOX9-201ENST00000245479 RNF213Q63HN8 5207 aa5.48□□□□□ -1.53
SOX9-201ENST00000245479 LORP23490 312 aaPredicted RBP5.47□□□□□ -1.53
SOX9-201ENST00000245479 TNXBP22105 4242 aa5.46□□□□□ -1.54
SOX9-201ENST00000245479 HERC1Q15751 4861 aa5.44□□□□□ -1.54
SOX9-201ENST00000245479 FAT4Q6V0I7 4981 aa5.43□□□□□ -1.54
SOX9-201ENST00000245479 KRTAP4-1Q9BYQ7 146 aa5.41□□□□□ -1.54
SOX9-201ENST00000245479 PCLOQ9Y6V0 5065 aa5.33□□□□□ -1.56
SOX9-201ENST00000245479 UBR4Q5T4S7 5183 aa5.27□□□□□ -1.57
SOX9-201ENST00000245479 KRTAP10-10P60014 251 aa5.2□□□□□ -1.58
SOX9-201ENST00000245479 FSIP2Q5CZC0 6907 aa5.14□□□□□ -1.59
SOX9-201ENST00000245479 HMCN2Q8NDA2 5059 aa5.1□□□□□ -1.59
SOX9-201ENST00000245479 BIRC6Q9NR09 4857 aa5.06□□□□□ -1.6
SOX9-201ENST00000245479 PRO2289Q9P1D8 64 aa5.03□□□□□ -1.6
SOX9-201ENST00000245479 INE1O15225 51 aa4.96□□□□□ -1.62
SOX9-201ENST00000245479 MUC17Q685J3 4493 aa4.96□□□□□ -1.62
SOX9-201ENST00000245479 USH2AO75445 5202 aa4.93□□□□□ -1.62
SOX9-201ENST00000245479 KRTAP23-1A1A580 65 aa4.88□□□□□ -1.63
SOX9-201ENST00000245479 FLGP20930 4061 aaPredicted RBP4.83□□□□□ -1.64
SOX9-201ENST00000245479 LCE3AQ5TA76 89 aa4.82□□□□□ -1.64
SOX9-201ENST00000245479 MT1HP80294 61 aa4.8□□□□□ -1.64
SOX9-201ENST00000245479 KRTAP19-2Q3LHN2 52 aa4.79□□□□□ -1.64
SOX9-201ENST00000245479 MT1FP04733 61 aa4.79□□□□□ -1.64
SOX9-201ENST00000245479 KMT2DO14686 5537 aa4.77□□□□□ -1.65
SOX9-201ENST00000245479 MT2AP02795 61 aa4.74□□□□□ -1.65
SOX9-201ENST00000245479 LCE2CQ5TA81 110 aa4.72□□□□□ -1.65
SOX9-201ENST00000245479 KRTAP19-1Q8IUB9 90 aa4.71□□□□□ -1.66
SOX9-201ENST00000245479 KRTAP12-3P60328 96 aa4.71□□□□□ -1.66
SOX9-201ENST00000245479 OBSCNQ5VST9 7968 aa4.68□□□□□ -1.66
SOX9-201ENST00000245479 KRTAP10-12P60413 245 aa4.68□□□□□ -1.66
SOX9-201ENST00000245479 SPRR5A0A1B0GTR4 108 aa4.6□□□□□ -1.67
SOX9-201ENST00000245479 SPRR2GQ9BYE4 73 aa4.59□□□□□ -1.68
SOX9-201ENST00000245479 KRTAP9-8Q9BYQ0 159 aa4.56□□□□□ -1.68
SOX9-201ENST00000245479 DSTQ03001 7570 aaKnown RBP4.55□□□□□ -1.68
SOX9-201ENST00000245479 KRTAP10-7P60409 375 aaPredicted RBP4.53□□□□□ -1.68
SOX9-201ENST00000245479 KRTAP8-1Q8IUC2 63 aa4.47□□□□□ -1.69
SOX9-201ENST00000245479 SYNE1Q8NF91 8797 aaKnown RBP4.47□□□□□ -1.69
SOX9-201ENST00000245479 KRTAP4-8A0A0G2JLE6 195 aa4.46□□□□□ -1.7
SOX9-201ENST00000245479 MT1BP07438 61 aa4.46□□□□□ -1.7
SOX9-201ENST00000245479 KRTAP4-8Q9BYQ9 185 aa4.46□□□□□ -1.7
SOX9-201ENST00000245479 CRCT1Q9UGL9 99 aa4.46□□□□□ -1.7
SOX9-201ENST00000245479 MT1XP80297 61 aa4.44□□□□□ -1.7
SOX9-201ENST00000245479 KRTAP10-5P60370 271 aa4.43□□□□□ -1.7
SOX9-201ENST00000245479 FCGBPQ9Y6R7 5405 aaPredicted RBP4.42□□□□□ -1.7
SOX9-201ENST00000245479 KRTAP19-5Q3LI72 72 aa4.36□□□□□ -1.71
SOX9-201ENST00000245479 KRTAP9-3Q9BYQ3 159 aa4.34□□□□□ -1.71
SOX9-201ENST00000245479 LCE2BO14633 110 aa4.34□□□□□ -1.72
SOX9-201ENST00000245479 KRTAP4-7Q9BYR0 210 aa4.31□□□□□ -1.72
SOX9-201ENST00000245479 KRTAP19-8Q3LI54 63 aa4.29□□□□□ -1.72
SOX9-201ENST00000245479 MUC12Q9UKN1 5478 aa4.27□□□□□ -1.73
SOX9-201ENST00000245479 LCE3CQ5T5A8 94 aa4.26□□□□□ -1.73
SOX9-201ENST00000245479 SYNE2Q8WXH0 6885 aaKnown RBP4.15□□□□□ -1.75
SOX9-201ENST00000245479 SSPOA2VEC9 5147 aa4.15□□□□□ -1.75
SOX9-201ENST00000245479 LCE2AQ5TA79 106 aaPredicted RBP4.04□□□□□ -1.76
SOX9-201ENST00000245479 KRTAP4-3Q9BYR4 195 aa4.04□□□□□ -1.76
SOX9-201ENST00000245479 LOC100996750A0A140TA64 210 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms