RNA–Protein interactions for RNA: ENST00000225742.13

SMARCD2-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 1 (best) BASIC

Gene SMARCD2, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-201ENST00000225742 PRAC1Q96KF2 57 aa11.28□□□□□ -0.6
SMARCD2-201ENST00000225742 KRTAP17-1Q9BYP8 105 aa11.27□□□□□ -0.61
SMARCD2-201ENST00000225742 ADM2Q7Z4H4 148 aa11.26□□□□□ -0.61
SMARCD2-201ENST00000225742 KRTAP3-3Q9BYR6 98 aa11.24□□□□□ -0.61
SMARCD2-201ENST00000225742 S4R3F8 94 aa11.21□□□□□ -0.61
SMARCD2-201ENST00000225742 DMBT1Q9UGM3 2413 aaPredicted RBP11.2□□□□□ -0.62
SMARCD2-201ENST00000225742 K7ERS5 55 aa11.14□□□□□ -0.63
SMARCD2-201ENST00000225742 TPRXLQ17RH7 258 aa11.13□□□□□ -0.63
SMARCD2-201ENST00000225742 KRTAP10-6P60371 365 aaPredicted RBP11.12□□□□□ -0.63
SMARCD2-201ENST00000225742 KRTAP3-2Q9BYR7 98 aa11.07□□□□□ -0.64
SMARCD2-201ENST00000225742 RYR3Q15413 4870 aa11.06□□□□□ -0.64
SMARCD2-201ENST00000225742 CSAG1Q6PB30 78 aa11.04□□□□□ -0.64
SMARCD2-201ENST00000225742 LINC01554Q52M75 96 aa11□□□□□ -0.65
SMARCD2-201ENST00000225742 KIAA1109Q2LD37 5005 aa10.94□□□□□ -0.66
SMARCD2-201ENST00000225742 KRTAP13-4Q3LI77 160 aa10.91□□□□□ -0.66
SMARCD2-201ENST00000225742 P0C880 135 aa10.86□□□□□ -0.67
SMARCD2-201ENST00000225742 MYCBP2O75592 4640 aa10.86□□□□□ -0.67
SMARCD2-201ENST00000225742 KRTAP25-1Q3LHN0 102 aa10.85□□□□□ -0.67
SMARCD2-201ENST00000225742 ROMO1P60602 79 aa10.81□□□□□ -0.68
SMARCD2-201ENST00000225742 A0A0D9SG42 100 aa10.79□□□□□ -0.68
SMARCD2-201ENST00000225742 SEC61BP60468 96 aaKnown RBP10.74□□□□□ -0.69
SMARCD2-201ENST00000225742 KRTAP4-5Q9BYR2 181 aa10.73□□□□□ -0.69
SMARCD2-201ENST00000225742 M0QZ58 72 aa10.7□□□□□ -0.7
SMARCD2-201ENST00000225742 EPPK1P58107 5090 aaKnown RBP10.65□□□□□ -0.7
SMARCD2-201ENST00000225742 LRP2P98164 4655 aa10.63□□□□□ -0.71
SMARCD2-201ENST00000225742 KRTAP12-2P59991 146 aa10.57□□□□□ -0.72
SMARCD2-201ENST00000225742 KRTAP12-1P59990 96 aa10.56□□□□□ -0.72
SMARCD2-201ENST00000225742 J3QL48 77 aa10.56□□□□□ -0.72
SMARCD2-201ENST00000225742 LPAP08519 4548 aa10.51□□□□□ -0.73
SMARCD2-201ENST00000225742 CRIPTQ9P021 101 aa10.51□□□□□ -0.73
SMARCD2-201ENST00000225742 SPINT4Q6UDR6 99 aa10.49□□□□□ -0.73
SMARCD2-201ENST00000225742 ABCA13Q86UQ4 5058 aa10.42□□□□□ -0.74
SMARCD2-201ENST00000225742 KRTAP4-1Q9BYQ7 146 aa10.4□□□□□ -0.74
SMARCD2-201ENST00000225742 R4GN34 69 aa10.36□□□□□ -0.75
SMARCD2-201ENST00000225742 MUC17Q685J3 4493 aa10.34□□□□□ -0.75
SMARCD2-201ENST00000225742 KRTAP19-2Q3LHN2 52 aa10.29□□□□□ -0.76
SMARCD2-201ENST00000225742 C10orf95Q9H7T3 257 aa10.23□□□□□ -0.77
SMARCD2-201ENST00000225742 HERC2O95714 4834 aa10.15□□□□□ -0.78
SMARCD2-201ENST00000225742 LORP23490 312 aaPredicted RBP10.14□□□□□ -0.79
SMARCD2-201ENST00000225742 BIRC6Q9NR09 4857 aa10.05□□□□□ -0.8
SMARCD2-201ENST00000225742 FLGP20930 4061 aaPredicted RBP9.91□□□□□ -0.82
SMARCD2-201ENST00000225742 KRTAP15-1Q3LI76 137 aa9.84□□□□□ -0.83
SMARCD2-201ENST00000225742 CAMK2N1Q7Z7J9 78 aa9.82□□□□□ -0.84
SMARCD2-201ENST00000225742 PP632Q6XCG6 107 aa9.72□□□□□ -0.85
SMARCD2-201ENST00000225742 HERC1Q15751 4861 aa9.72□□□□□ -0.85
SMARCD2-201ENST00000225742 LCE2CQ5TA81 110 aa9.7□□□□□ -0.86
SMARCD2-201ENST00000225742 H3BS24 57 aa9.7□□□□□ -0.86
SMARCD2-201ENST00000225742 HMCN2Q8NDA2 5059 aa9.64□□□□□ -0.87
SMARCD2-201ENST00000225742 SPRR2GQ9BYE4 73 aa9.54□□□□□ -0.88
SMARCD2-201ENST00000225742 PCLOQ9Y6V0 5065 aa9.53□□□□□ -0.88
SMARCD2-201ENST00000225742 PLAC4Q8WY50 150 aa9.52□□□□□ -0.89
SMARCD2-201ENST00000225742 KRTAP23-1A1A580 65 aa9.51□□□□□ -0.89
SMARCD2-201ENST00000225742 MUC2Q02817 5179 aa9.51□□□□□ -0.89
SMARCD2-201ENST00000225742 TNP1P09430 55 aa9.5□□□□□ -0.89
SMARCD2-201ENST00000225742 MT1HP80294 61 aa9.45□□□□□ -0.9
SMARCD2-201ENST00000225742 M0R2T5 61 aa9.45□□□□□ -0.9
SMARCD2-201ENST00000225742 NDUFAF8A1L188 74 aa9.44□□□□□ -0.9
SMARCD2-201ENST00000225742 KRTAP19-1Q8IUB9 90 aa9.41□□□□□ -0.9
SMARCD2-201ENST00000225742 MT2AP02795 61 aa9.29□□□□□ -0.92
SMARCD2-201ENST00000225742 KRTAP10-10P60014 251 aa9.25□□□□□ -0.93
SMARCD2-201ENST00000225742 MT1FP04733 61 aa9.24□□□□□ -0.93
SMARCD2-201ENST00000225742 KRTAP9-8Q9BYQ0 159 aa9.23□□□□□ -0.93
SMARCD2-201ENST00000225742 RNF213Q63HN8 5207 aa9.21□□□□□ -0.94
SMARCD2-201ENST00000225742 KRTAP19-8Q3LI54 63 aa9.17□□□□□ -0.94
SMARCD2-201ENST00000225742 FAT4Q6V0I7 4981 aa9.09□□□□□ -0.95
SMARCD2-201ENST00000225742 LUZP6Q538Z0 58 aa9.06□□□□□ -0.96
SMARCD2-201ENST00000225742 UBR4Q5T4S7 5183 aa8.99□□□□□ -0.97
SMARCD2-201ENST00000225742 SPRR5A0A1B0GTR4 108 aa8.95□□□□□ -0.98
SMARCD2-201ENST00000225742 MT1BP07438 61 aa8.95□□□□□ -0.98
SMARCD2-201ENST00000225742 LCE3AQ5TA76 89 aa8.91□□□□□ -0.98
SMARCD2-201ENST00000225742 KRTAP10-5P60370 271 aa8.87□□□□□ -0.99
SMARCD2-201ENST00000225742 KRTAP9-3Q9BYQ3 159 aa8.87□□□□□ -0.99
SMARCD2-201ENST00000225742 MT1XP80297 61 aa8.85□□□□□ -0.99
SMARCD2-201ENST00000225742 KRTAP8-1Q8IUC2 63 aa8.81□□□□□ -1
SMARCD2-201ENST00000225742 KRTAP10-12P60413 245 aa8.67□□□□□ -1.02
SMARCD2-201ENST00000225742 PRO2289Q9P1D8 64 aa8.67□□□□□ -1.02
SMARCD2-201ENST00000225742 KRTAP12-3P60328 96 aa8.55□□□□□ -1.04
SMARCD2-201ENST00000225742 KRTAP10-7P60409 375 aaPredicted RBP8.53□□□□□ -1.04
SMARCD2-201ENST00000225742 A0A0A0MQY5 61 aa8.52□□□□□ -1.04
SMARCD2-201ENST00000225742 LCE2BO14633 110 aa8.46□□□□□ -1.06
SMARCD2-201ENST00000225742 LCE2AQ5TA79 106 aaPredicted RBP8.46□□□□□ -1.06
SMARCD2-201ENST00000225742 KRTAP19-5Q3LI72 72 aa8.19□□□□□ -1.1
SMARCD2-201ENST00000225742 LCE3CQ5T5A8 94 aa8.06□□□□□ -1.12
SMARCD2-201ENST00000225742 KRTAP4-8A0A0G2JLE6 195 aa7.96□□□□□ -1.13
SMARCD2-201ENST00000225742 KRTAP4-8Q9BYQ9 185 aa7.96□□□□□ -1.13
SMARCD2-201ENST00000225742 KRTAP19-4Q3LI73 84 aa7.96□□□□□ -1.14
SMARCD2-201ENST00000225742 USH2AO75445 5202 aa7.92□□□□□ -1.14
SMARCD2-201ENST00000225742 KRTAP19-7Q3SYF9 63 aa7.89□□□□□ -1.15
SMARCD2-201ENST00000225742 INE1O15225 51 aa7.83□□□□□ -1.16
SMARCD2-201ENST00000225742 KRTAP19-6Q3LI70 58 aa7.76□□□□□ -1.17
SMARCD2-201ENST00000225742 MT1EP04732 61 aa7.7□□□□□ -1.18
SMARCD2-201ENST00000225742 MT1LQ93083 61 aa7.68□□□□□ -1.18
SMARCD2-201ENST00000225742 SSPOA2VEC9 5147 aa7.66□□□□□ -1.18
SMARCD2-201ENST00000225742 KRTAP9-6A8MVA2 160 aa7.64□□□□□ -1.19
SMARCD2-201ENST00000225742 KMT2DO14686 5537 aa7.63□□□□□ -1.19
SMARCD2-201ENST00000225742 KRTAP4-7Q9BYR0 210 aa7.52□□□□□ -1.2
SMARCD2-201ENST00000225742 KRTAP2-3P0C7H8 128 aa7.46□□□□□ -1.21
SMARCD2-201ENST00000225742 KRTAP2-4Q9BYR9 128 aa7.46□□□□□ -1.21
SMARCD2-201ENST00000225742 KRTAP2-1Q9BYU5 128 aa7.46□□□□□ -1.21
SMARCD2-201ENST00000225742 LCE2DQ5TA82 110 aaPredicted RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms