RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 HERC2O95714 4834 aa7.97□□□□□ -1.13
CCDC47-201ENST00000225726 XP32Q5T750 250 aa7.97□□□□□ -1.13
CCDC47-201ENST00000225726 LINC01558Q9Y6Z2 57 aa7.96□□□□□ -1.13
CCDC47-201ENST00000225726 RPL37P61927 97 aaKnown RBP7.95□□□□□ -1.14
CCDC47-201ENST00000225726 J3QL48 77 aa7.94□□□□□ -1.14
CCDC47-201ENST00000225726 TPRXLQ17RH7 258 aa7.92□□□□□ -1.14
CCDC47-201ENST00000225726 ABCA13Q86UQ4 5058 aa7.92□□□□□ -1.14
CCDC47-201ENST00000225726 DMAC1Q96GE9 116 aa7.9□□□□□ -1.14
CCDC47-201ENST00000225726 A0A1B0GU69 56 aa7.89□□□□□ -1.15
CCDC47-201ENST00000225726 ACYP2P14621 99 aa7.87□□□□□ -1.15
CCDC47-201ENST00000225726 MIR22HGQ0VDD5 57 aa7.83□□□□□ -1.16
CCDC47-201ENST00000225726 COX6B2Q6YFQ2 88 aa7.71□□□□□ -1.18
CCDC47-201ENST00000225726 UQCR11O14957 56 aa7.7□□□□□ -1.18
CCDC47-201ENST00000225726 KRTAP3-1Q9BYR8 98 aa7.7□□□□□ -1.18
CCDC47-201ENST00000225726 ROMO1P60602 79 aa7.68□□□□□ -1.18
CCDC47-201ENST00000225726 LPAP08519 4548 aa7.67□□□□□ -1.18
CCDC47-201ENST00000225726 SEC61BP60468 96 aaKnown RBP7.65□□□□□ -1.19
CCDC47-201ENST00000225726 LRP2P98164 4655 aa7.64□□□□□ -1.19
CCDC47-201ENST00000225726 A0A0A0MQY5 61 aa7.62□□□□□ -1.19
CCDC47-201ENST00000225726 SPINT4Q6UDR6 99 aa7.61□□□□□ -1.19
CCDC47-201ENST00000225726 SPATA8Q6RVD6 105 aa7.59□□□□□ -1.19
CCDC47-201ENST00000225726 PCLOQ9Y6V0 5065 aa7.57□□□□□ -1.2
CCDC47-201ENST00000225726 NDUFAF8A1L188 74 aa7.56□□□□□ -1.2
CCDC47-201ENST00000225726 P0C880 135 aa7.55□□□□□ -1.2
CCDC47-201ENST00000225726 KRTAP25-1Q3LHN0 102 aa7.51□□□□□ -1.21
CCDC47-201ENST00000225726 MUC17Q685J3 4493 aa7.5□□□□□ -1.21
CCDC47-201ENST00000225726 H1FX-AS1Q4G0G2 97 aa7.49□□□□□ -1.21
CCDC47-201ENST00000225726 S4R3F8 94 aa7.47□□□□□ -1.21
CCDC47-201ENST00000225726 KRTAP4-1Q9BYQ7 146 aa7.46□□□□□ -1.21
CCDC47-201ENST00000225726 KRTAP3-3Q9BYR6 98 aa7.43□□□□□ -1.22
CCDC47-201ENST00000225726 HERC1Q15751 4861 aa7.41□□□□□ -1.22
CCDC47-201ENST00000225726 HMCN2Q8NDA2 5059 aa7.41□□□□□ -1.22
CCDC47-201ENST00000225726 C10orf95Q9H7T3 257 aa7.34□□□□□ -1.23
CCDC47-201ENST00000225726 A0A0D9SG42 100 aa7.31□□□□□ -1.24
CCDC47-201ENST00000225726 H0YAA0 97 aa7.31□□□□□ -1.24
CCDC47-201ENST00000225726 KRTAP19-2Q3LHN2 52 aa7.29□□□□□ -1.24
CCDC47-201ENST00000225726 K7ERS5 55 aa7.22□□□□□ -1.25
CCDC47-201ENST00000225726 A0A1B0GU33 70 aa7.22□□□□□ -1.25
CCDC47-201ENST00000225726 KRTAP3-2Q9BYR7 98 aa7.2□□□□□ -1.26
CCDC47-201ENST00000225726 KRTAP10-6P60371 365 aaPredicted RBP7.19□□□□□ -1.26
CCDC47-201ENST00000225726 LUZP6Q538Z0 58 aa7.09□□□□□ -1.27
CCDC47-201ENST00000225726 MUC2Q02817 5179 aa7.09□□□□□ -1.27
CCDC47-201ENST00000225726 FLGP20930 4061 aaPredicted RBP7.07□□□□□ -1.28
CCDC47-201ENST00000225726 LCE2CQ5TA81 110 aa7.07□□□□□ -1.28
CCDC47-201ENST00000225726 RNF213Q63HN8 5207 aa7.02□□□□□ -1.29
CCDC47-201ENST00000225726 KRTAP13-4Q3LI77 160 aa7.01□□□□□ -1.29
CCDC47-201ENST00000225726 UBR4Q5T4S7 5183 aa7□□□□□ -1.29
CCDC47-201ENST00000225726 M0QZ58 72 aa6.95□□□□□ -1.3
CCDC47-201ENST00000225726 MT1HP80294 61 aa6.92□□□□□ -1.3
CCDC47-201ENST00000225726 KRTAP15-1Q3LI76 137 aa6.89□□□□□ -1.31
CCDC47-201ENST00000225726 R4GN34 69 aa6.87□□□□□ -1.31
CCDC47-201ENST00000225726 M0R2T5 61 aa6.86□□□□□ -1.31
CCDC47-201ENST00000225726 LORP23490 312 aaPredicted RBP6.86□□□□□ -1.31
CCDC47-201ENST00000225726 FAT4Q6V0I7 4981 aa6.8□□□□□ -1.32
CCDC47-201ENST00000225726 KRTAP12-1P59990 96 aa6.76□□□□□ -1.33
CCDC47-201ENST00000225726 KRTAP12-2P59991 146 aa6.74□□□□□ -1.33
CCDC47-201ENST00000225726 MT2AP02795 61 aa6.68□□□□□ -1.34
CCDC47-201ENST00000225726 KRTAP9-8Q9BYQ0 159 aa6.67□□□□□ -1.34
CCDC47-201ENST00000225726 MT1FP04733 61 aa6.64□□□□□ -1.35
CCDC47-201ENST00000225726 KRTAP10-10P60014 251 aa6.63□□□□□ -1.35
CCDC47-201ENST00000225726 SPRR2GQ9BYE4 73 aa6.61□□□□□ -1.35
CCDC47-201ENST00000225726 KRTAP19-1Q8IUB9 90 aa6.57□□□□□ -1.36
CCDC47-201ENST00000225726 LCE2AQ5TA79 106 aaPredicted RBP6.55□□□□□ -1.36
CCDC47-201ENST00000225726 PLAC4Q8WY50 150 aa6.5□□□□□ -1.37
CCDC47-201ENST00000225726 CAMK2N1Q7Z7J9 78 aa6.45□□□□□ -1.38
CCDC47-201ENST00000225726 KRTAP9-3Q9BYQ3 159 aa6.44□□□□□ -1.38
CCDC47-201ENST00000225726 KRTAP19-8Q3LI54 63 aa6.42□□□□□ -1.38
CCDC47-201ENST00000225726 MT1BP07438 61 aa6.31□□□□□ -1.4
CCDC47-201ENST00000225726 LCE2BO14633 110 aa6.23□□□□□ -1.41
CCDC47-201ENST00000225726 TNP1P09430 55 aa6.17□□□□□ -1.42
CCDC47-201ENST00000225726 MT1XP80297 61 aa6.14□□□□□ -1.43
CCDC47-201ENST00000225726 KRTAP10-5P60370 271 aa6.13□□□□□ -1.43
CCDC47-201ENST00000225726 PP632Q6XCG6 107 aa6.06□□□□□ -1.44
CCDC47-201ENST00000225726 PRO2289Q9P1D8 64 aa6.06□□□□□ -1.44
CCDC47-201ENST00000225726 KRTAP23-1A1A580 65 aa6.04□□□□□ -1.44
CCDC47-201ENST00000225726 USH2AO75445 5202 aa5.97□□□□□ -1.45
CCDC47-201ENST00000225726 LCE2DQ5TA82 110 aaPredicted RBP5.93□□□□□ -1.46
CCDC47-201ENST00000225726 KRTAP10-7P60409 375 aaPredicted RBP5.9□□□□□ -1.47
CCDC47-201ENST00000225726 LCE3AQ5TA76 89 aa5.89□□□□□ -1.47
CCDC47-201ENST00000225726 KRTAP10-12P60413 245 aa5.87□□□□□ -1.47
CCDC47-201ENST00000225726 KRTAP19-6Q3LI70 58 aa5.83□□□□□ -1.48
CCDC47-201ENST00000225726 SSPOA2VEC9 5147 aa5.8□□□□□ -1.48
CCDC47-201ENST00000225726 KRTAP8-1Q8IUC2 63 aa5.77□□□□□ -1.49
CCDC47-201ENST00000225726 KRTAP12-3P60328 96 aa5.64□□□□□ -1.51
CCDC47-201ENST00000225726 KRTAP4-8A0A0G2JLE6 195 aa5.61□□□□□ -1.51
CCDC47-201ENST00000225726 KRTAP4-8Q9BYQ9 185 aa5.61□□□□□ -1.51
CCDC47-201ENST00000225726 KRTAP9-2Q9BYQ4 174 aa5.6□□□□□ -1.51
CCDC47-201ENST00000225726 KRTAP19-5Q3LI72 72 aa5.58□□□□□ -1.52
CCDC47-201ENST00000225726 FSIP2Q5CZC0 6907 aa5.53□□□□□ -1.52
CCDC47-201ENST00000225726 KMT2DO14686 5537 aa5.49□□□□□ -1.53
CCDC47-201ENST00000225726 FCGBPQ9Y6R7 5405 aaPredicted RBP5.49□□□□□ -1.53
CCDC47-201ENST00000225726 KRTAP19-7Q3SYF9 63 aa5.47□□□□□ -1.53
CCDC47-201ENST00000225726 CRCT1Q9UGL9 99 aa5.43□□□□□ -1.54
CCDC47-201ENST00000225726 SPRR5A0A1B0GTR4 108 aa5.42□□□□□ -1.54
CCDC47-201ENST00000225726 INE1O15225 51 aa5.38□□□□□ -1.55
CCDC47-201ENST00000225726 MT1EP04732 61 aa5.38□□□□□ -1.55
CCDC47-201ENST00000225726 OBSCNQ5VST9 7968 aa5.35□□□□□ -1.55
CCDC47-201ENST00000225726 KRTAP9-6A0A140TA67 174 aa5.33□□□□□ -1.56
CCDC47-201ENST00000225726 LCE3CQ5T5A8 94 aa5.29□□□□□ -1.56
CCDC47-201ENST00000225726 MT1LQ93083 61 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms